BAC Information

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BAC

Clone NameB6Ng01-337M23
Chromosome5 (Build37)
Map Location 17,697,248 - 17,827,949
singlet/doubletdoublet
Overlap geneGnai1
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneLOC100041818, LOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337M23.bB6Ng01-337M23.g
ACCGA122318GA122319
length8761,127
definitionB6Ng01-337M23.b B6Ng01-337M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,697,248 - 17,697,839)(17,826,821 - 17,827,949)
sequence
gaattctctagaagttccattttcctggaatgaaggaggttctcaggagt
caatgcaggtgaccttagcagaaatgcccaacagttgggatatgaactct
gcagagaccacctctagtagccagacaagaaccccagtggatggatgggg
acactaacccacctgcaaaacttttgactcaaaattggtcctgtataaaa
gaattgcagggacaaaaatggagcagaaactaaaggtggctgaccagtga
ctggcccatgtagagacccatcccttgggcaggcaccaatccctcacact
attactgatgctatgatgtgcttgcagacaggagcctagcatagcagccc
tctgagagacactatccaggagctgactgagacagatgcagatacccaca
gacaaacattggacagaggttggggacccctgtggaagagttagggtaag
gattgatgatcctcaaggaaatggcaactccaaagaaaatcaactcacct
ggacccataggaacttccacaggctaagccaccaaccagagtgcatacat
tggctggttcaaggtccctgacacatatgcagagggctgccatgtttggc
ctcagtaggagagagttcacctgatcctgcagagacttgatgtggcaggc
tggggggggggtgcccaaggggggctgcccttttagagataaagggaata
gggatgggggagaaactctgttagtggggattgggggcagacaacaattt
ggcatgtaaataaataataacatttctcttctctttctacatgcctagtc
cagtgtccttctcattgatctctctttaaaagcagaattggtatttttaa
ttttaatttaatttttgtttttgttg
gaattcatggcttaaaacaaaaacaaaaacaagaaccaaaaaaaaaaatg
ttacgttccttattcctcatttttcaaaagccttcgactttaattgaagg
aacaaaatcataatctaaaaaaggaaaacaataacaacaacaatatcaga
catagagccttcacccctgcattctagtgtctttggcacaggaaggtact
ctgcatattaattaccaaaggaggaatgtaaacaccaacccagccagaaa
ccctttgatctacaatgcagtcctgcctgcaagacaggctagtaaatggg
aacacaaagtgggacttaccaatcaatacctgatttgactgaaggcccat
cccacaagatggaatccatatgggacactgcttcaactgttgtatcgtgc
atatattgaattgcagaattcttaatgtaacaatgagacagagggaaagg
aaagacgggagcatggggctatgtatgctgcaaatactttggttacttcc
cacgtctaggagtctctagctgctttgtgatgcatctctacatacctagt
aaatttatttttgtgtcttagtttaaaccaagggcagttggaacagcatg
ttgtagccatggagatgtaagcgatgagaactttggagtttcctcttttg
ttaggaaagggcatttgttttatttcttctactttctacttccactcatt
gcaaagctcacatgaagatggagtcggcttacaattcagatgatagccac
attatgaagaaggcagagcaaaagagtaatgtccatgtctctttctaaat
atccttcaaaagtcatatcttaacaactaggattgcaagagttaatttgc
attatagctttcatgtagaaaggaaatatcatctgaatttagtttataat
cagatcgtcacctgctgtttagtagaagaaaactaaaacaatatttaaaa
attgaaattaattaccagagccttggtaaagcccagttatttgaacagtc
aataatgtatattgcagcaaaaccattgtgttatatgttgcctgcgcctt
accatattccactagtaagagatgaaagtagccttgaaggaaaaaaaagt
gacttgagtttttgattatttgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17697248_17697839
seq2: B6Ng01-337M23.b_330_925

seq1  AGGCACCAATCCCTCACACTATTACTGATGCTATGATGTGCTTGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAATCCCTCACACTATTACTGATGCTATGATGTGCTTGCAGACA  50

seq1  GGAGCCTAGCATAGCAGCCCTCTGAGAGACACTATCCAGGAGCTGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGCATAGCAGCCCTCTGAGAGACACTATCCAGGAGCTGACTGA  100

seq1  GACAGATGCAGATACCCACAGACAAACATTGGACAGAGGTTGGGGACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGCAGATACCCACAGACAAACATTGGACAGAGGTTGGGGACCCC  150

seq1  TGTGGAAGAGTTAGGGTAAGGATTGATGATCCTCAAGGAAATGGCAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGAGTTAGGGTAAGGATTGATGATCCTCAAGGAAATGGCAACTC  200

seq1  CAAAGAAAATCAACTCACCTGGACCCATAGGAACTTCCACAGGCTAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATCAACTCACCTGGACCCATAGGAACTTCCACAGGCTAAGCC  250

seq1  ACCAACCAGAGTGCATACATTGGCTGGTTCAAGGTCCCTGACACATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAGAGTGCATACATTGGCTGGTTCAAGGTCCCTGACACATATGC  300

seq1  AGAGGGCTGCCATGTTTGGCCTCAGTAGGAGAGAGTTCACCTGATCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGCCATGTTTGGCCTCAGTAGGAGAGAGTTCACCTGATCCTGC  350

seq1  AGAGACTTGATGTGGCAGGCTGGGGGGGGGGTGCCCAAGGGGGGCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGATGTGGCAGGCTGGGGGGGGGGTGCCCAAGGGGGGCTGCCC  400

seq1  TTTTAGAGATAAAGGGAATAGGGATGGGGGAGAAACTCTGTTAGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGATAAAGGGAATAGGGATGGGGGAGAAACTCTGTTAGTGGGGA  450

seq1  TTGGGGGCAGACAAC-ATTTGGCATGTAAATAAATAATAACATTTCTC-T  498
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TTGGGGGCAGACAACAATTTGGCATGTAAATAAATAATAACATTTCTCTT  500

seq1  CTCTTTCTACATGCCTAGTCCAGTGTCCTTCTCATTGATCTCTC-TTAAA  547
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTTTCTACATGCCTAGTCCAGTGTCCTTCTCATTGATCTCTCTTTAAA  550

seq1  AGCAGAAATGGTATTTTTAATTTTAATTTAA-TTTTGTTTTTGTTG  592
      ||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AGCAGAATTGGTATTTTTAATTTTAATTTAATTTTTGTTTTTGTTG  596

seq1: chr5_17826821_17827949
seq2: B6Ng01-337M23.g_65_1191 (reverse)

seq1  CAACA-AAATAAACAAAAACTCAAGTCACTTTTTTCTCCTTCAAAGCTAC  49
      ||||| |||||| |||||||||||||||||||||| |||||||| |||| 
seq2  CAACACAAATAATCAAAAACTCAAGTCACTTTTTTTTCCTTCAAGGCTA-  49

seq1  CTTCCATCTTCCTTACTAGTG--ATATGGTAAGGCGCAGGCAACATAT-A  96
      ||| |||||  ||||||||||  ||||||||||||||||||||||||| |
seq2  CTTTCATCT--CTTACTAGTGGAATATGGTAAGGCGCAGGCAACATATAA  97

seq1  CACAATGGTTTTTGCTGCAATATTACATTAATTGACTGTTCAAATAACTG  146
      |||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  CACAATGG-TTTTGCTGCAATA-TACATT-ATTGACTGTTCAAATAACTG  144

seq1  GGCTTTACCAAGGCTCTGGTAATTAATTTCAATTTTTAAATATTGTTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCTTTACCAAGGCTCTGGTAATTAATTTCAATTTTTAAATATTG-TTTT  193

seq1  AGTTTTCTTCTACTAAACAGCAGGTGACGATCTGATTATAAACTAAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTCTACTAAACAGCAGGTGACGATCTGATTATAAACTAAATTC  243

seq1  AGATGATATTTCC-TTCTACATGAAAGCTATAATGCAAATTAACTCTTGC  295
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGATGATATTTCCTTTCTACATGAAAGCTATAATGCAAATTAACTCTTGC  293

seq1  AATCCTAGTTGTTAAGATATGACTTTTGAAGGATATTTAGAAAGAGACAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGTTGTTAAGATATGACTTTTGAAGGATATTTAGAAAGAGACAT  343

seq1  GGACATTACTCTTTTGCTCTGCCTTCTTCATAATGTGGCTATCATCTGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTACTCTTTTGCTCTGCCTTCTTCATAATGTGGCTATCATCTGAA  393

seq1  TTGTAAGCCGACTCCATCTTCATGTGAGCTTTGCAATGAGTGGAAGTAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCCGACTCCATCTTCATGTGAGCTTTGCAATGAGTGGAAGTAGA  443

seq1  AAGTAGAAGAAATAAAACAAATGCCCTTTCCTAACAAAAGAGGAAACTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGAAATAAAACAAATGCCCTTTCCTAACAAAAGAGGAAACTCC  493

seq1  AAAGTTCTCATCGCTTACATCTCCATGGCTACAACATGCTGTTCCAACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTCATCGCTTACATCTCCATGGCTACAACATGCTGTTCCAACTG  543

seq1  CCCTTGGTTTAAACTAAGACACAAAAATAAATTTACTAGGTATGTAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTTTAAACTAAGACACAAAAATAAATTTACTAGGTATGTAGAGA  593

seq1  TGCATCACAAAGCAGCTAGAGACTCCTAGACGTGGGAAGTAACCAAAGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACAAAGCAGCTAGAGACTCCTAGACGTGGGAAGTAACCAAAGTA  643

seq1  TTTGCAGCATACATAGCCCCATGCTCCCGTCTTTCCTTTCCCTCTGTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCATACATAGCCCCATGCTCCCGTCTTTCCTTTCCCTCTGTCTC  693

seq1  ATTGTTACATTAAGAATTCTGCAATTCAATATATGCACGATACAACAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACATTAAGAATTCTGCAATTCAATATATGCACGATACAACAGTT  743

seq1  GAAGCAGTGTCCCATATGGATTCCATCTTGTGGGATGGGCCTTCAGTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTGTCCCATATGGATTCCATCTTGTGGGATGGGCCTTCAGTCAA  793

seq1  ATCAGGTATTGATTGGTAAGTCCCACTTTGTGTTCCCATTTACTAGCCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTATTGATTGGTAAGTCCCACTTTGTGTTCCCATTTACTAGCCTG  843

seq1  TCTTGCAGGCAGGACTGCATTGTAGATCAAAGGGTTTCTGGCTGGGTTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGGCAGGACTGCATTGTAGATCAAAGGGTTTCTGGCTGGGTTGG  893

seq1  TGTTTACATTCCTCCTTTGGTAATTAATATGCAGAGTACCTTCCTGTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATTCCTCCTTTGGTAATTAATATGCAGAGTACCTTCCTGTGCC  943

seq1  AAAGACACTAGAATGCAGGGGTGAAGGCTCTATGTCTGATATTGTTGTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACTAGAATGCAGGGGTGAAGGCTCTATGTCTGATATTGTTGTTG  993

seq1  TTATTGTTTTCCTTTTTTAGATTATGATTTTGTTCCTTCAATTAAAGTCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTTCCTTTTTTAGATTATGATTTTGTTCCTTCAATTAAAGTCG  1043

seq1  AAGGCTTTTGAAAAATGAGGAATAAGGAACGTAACATTTTTTTTTTTGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTTGAAAAATGAGGAATAAGGAACGTAACATTTTTTTTTTTGGT  1093

seq1  TCTTGTTTTTGTTTTTGTTTTAAGCCATGAATTC  1129
      ||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTGTTTTTGTTTTAAGCCATGAATTC  1127