BAC Information

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BAC

Clone NameB6Ng01-338F11
Chromosome5 (Build37)
Map Location 59,870,781 - 59,992,731
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F11.bB6Ng01-338F11.g
ACCGA122677GA122678
length8731,112
definitionB6Ng01-338F11.b B6Ng01-338F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,870,781 - 59,871,305)(59,991,619 - 59,992,731)
sequence
gaattccacagaaaaaccaagagagtcagctaatgtggacccttggacct
tttagaatctgaatcatcagccaaaaaaacatacacctgggtatccttgc
acatatttaacagatgtgcagcttggtcttcatgtgggtcctgaacaact
ggaatggtggctagctgttgcctgtctttggtatatgttctacctgcatt
gctttgtctgccttcagtaagagagtatacaccccaaccttaacaggatt
tatttgccatggagaccagatcagatcagaagaaaagggcatggggatgg
tggaaggattgtgggagaaggggaccaagaggtagtcagtgaccttgatg
taacgtgaataagtaaataaaattaaatttaaaatgataatcacataaaa
tatatattaagcatactttttataaaattaatgataataaaatgcatatc
ttggaaaaaagaaacaaatacaggagacagaggaaaggaaatcttagtgg
ggaggataatttgtcctggaggacaaagaactgcctctagatagagaaga
gacagacatgcacacaggaaaatgagaggttagaaagataaaacaggaaa
gctcaagttagcatgaggtgttgaattctaattggggcatttaattaggt
gattcaaggatcttttgattgctgtacttcaatacatttataactggtta
ttagtagtcagcctccaaaggcaaaatggtcaagtaagagaatataccac
tggagctagctctaaagtaatctaatggtttttagcagagggattgggaa
agggtaggctttacagagtcatgttcgtgagctggcaagaatctcttaag
aggtagggtgggatggaatcaga

gaattctttctcactagaaatccaagtatctggttgcatttaaaaactgt
aatttgttacaataatccatactggtgttattccagagagttgcatactg
ttattattccaggaggttcagacaaccatattgttgaggttttataggtt
cactttccacgttatgttttgaggacattatttgaaaggaatgaacctgg
tagttatattctgactatattaaccagcacttattccatgtaaatcccca
tgcactaactgccaggtttgtgttgtagatatatcaatctcttggggttg
aaaacactaaagttacttttttttgtctaaaacaattgtaaagtctactt
atcatgattatgagacgggcaagatatcctcaagggtacaattataatac
tctgatattgaagataaccaataattatttaattatcatcaaggtccttt
taataagggatttatgtttggtactgtaaatgcagtcaggtaaacatgga
tgtcaaagtcataaacccaagagggcaaaccccttctgccaatttctcaa
agcaatatagtttctaactttgttctgaatacttatacatatacccatat
attggcccagctctttccgttcactaaagacacctctttttacaactgat
agaaaatattaaagaattatattttataactataccgattgaataacttt
ctgttattttagcctaaatttatactgtaagattgttaaatgtattatta
acatagttgagaatttagaatagggggcaaagaacttgaaggaggagaag
gagaggaaactgtattcatattattcagaaaagtcaaaaaaacctcatct
gagagagagattatttagagtatcaacttacaggtttaaataatctaaat
agtgactaccccagattgaatataaaaatagataactatgatgcttaagt
tccaaatactttttatatctgtattttgtttataagaatttattttacag
cttgctcgtattcaagaataaatgcttaactaatgttacactcataaaaa
tactgaattctttttggtgagaaaaaaatatgtgtccatcctaaatttcc
tctgaatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59870781_59871305
seq2: B6Ng01-338F11.b_395_917

seq1  GTAACGTGAATAAGTAAATAAAATTAAATTTAAAATGATAATCACATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTGAATAAGTAAATAAAATTAAATTTAAAATGATAATCACATAAA  50

seq1  ATATATATTAAGCATACTTTTTATAAAATTAATGATAATAAAATGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTAAGCATACTTTTTATAAAATTAATGATAATAAAATGCATAT  100

seq1  CTTGGAAAAAAGAAACAAATACAGGAGACAGAGGAAAGGAAATCTTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAAAGAAACAAATACAGGAGACAGAGGAAAGGAAATCTTAGTG  150

seq1  GGGAGGATAATTTGTCCTGGAGGACAAAGAACTGCCTCTAGATAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATAATTTGTCCTGGAGGACAAAGAACTGCCTCTAGATAGAGAAG  200

seq1  AGACAGACATGCACACAGGAAAATGAGAGGTTAGAAAGATAAAACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACATGCACACAGGAAAATGAGAGGTTAGAAAGATAAAACAGGAA  250

seq1  AGCTCAAGTTAGCATGAGGTGTTGAATTCTAATTGGGGCATTTAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTTAGCATGAGGTGTTGAATTCTAATTGGGGCATTTAATTAGG  300

seq1  TGATTCAAGGATCTTTTGATTGCTGTACTTCAATACATTTATAACTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAGGATCTTTTGATTGCTGTACTTCAATACATTTATAACTGGTT  350

seq1  ATTAGTAGTCAGCCTCCAAAGGCAAAAATGGTCAAGTAAGAGAATATACC  400
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTAGTAGTCAGCCTCCAAAGGC-AAAATGGTCAAGTAAGAGAATATACC  399

seq1  ACTGGAGCTAGCTCTAAAGTAATCTAATGGTTTTTAGCAGAGGGATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCTAGCTCTAAAGTAATCTAATGGTTTTTAGCAGAGGGATTGGG  449

seq1  AAAGGGCAGGCTTTACAGAGTCATGTTCGTGAGCTGGCAAGAATCTCTTA  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAGGCTTTACAGAGTCATGTTCGTGAGCTGGCAAGAATCTCTTA  499

seq1  AGAGGTAGGGTGGGATGGGAATCAG  525
      |||||||||||||||| ||||||||
seq2  AGAGGTAGGGTGGGAT-GGAATCAG  523


seq1: chr5_59991619_59992731
seq2: B6Ng01-338F11.g_66_1177 (reverse)

seq1  AAAAAAATCAGA-GAAATTTAGAATGGACACATA--TTTTTCTCAC--AA  45
      |||||| ||||| ||||||||| |||||||||||  ||||||||||  ||
seq2  AAAAAATTCAGAGGAAATTTAGGATGGACACATATTTTTTTCTCACCAAA  50

seq1  AAGATTTCAGTA-TTTTATGAGTTGTAACATTAAGTTAAAGCATTTATTC  94
      |||| ||||||| ||||||||| ||||||||| |||| ||||||||||||
seq2  AAGAATTCAGTATTTTTATGAG-TGTAACATT-AGTT-AAGCATTTATTC  97

seq1  TTGAAATACGAGCAAGCTGTAAAATAAATTCTTAATAAACAAAATAACAG  144
      ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TTG-AATACGAGCAAGCTGTAAAATAAATTCTT-ATAAACAAAAT-ACAG  144

seq1  AATATAAAAAGTATTTGGAACTTAAGCATCATAGTTATCTATTTTTATAT  194
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATATAAAAAGTATTTGGAACTTAAGCATCATAGTTATCTATTTTTATAT  193

seq1  TCAATCTGGGGTAGTCACTATTTAGATTATTTAAACCTGTAAGTTGATAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGGGGTAGTCACTATTTAGATTATTTAAACCTGTAAGTTGATAC  243

seq1  TCTAAATAATCTCTCTCTCAGATGAGGTTTTTTTGACTTTTCTGAATAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAATCTCTCTCTCAGATGAGGTTTTTTTGACTTTTCTGAATAAT  293

seq1  ATGAATACAGTTTCCTCTCCTTCTCCTCCTTCAAGTTCTTTGCCCCCTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAGTTTCCTCTCCTTCTCCTCCTTCAAGTTCTTTGCCCCCTAT  343

seq1  TCTAAATTCTCAACTATGTTAATAATACATTTAACAATCTTACAGTATAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTCTCAACTATGTTAATAATACATTTAACAATCTTACAGTATAA  393

seq1  ATTTAGGCTAAAATAACAGAAAGTTATTCAATCGGTATAGTTATAAAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCTAAAATAACAGAAAGTTATTCAATCGGTATAGTTATAAAATA  443

seq1  TAATTCTTTAATATTTTCTATCAGTTGTAAAAAGAGGTGTCTTTAGTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTTAATATTTTCTATCAGTTGTAAAAAGAGGTGTCTTTAGTGAA  493

seq1  CGGAAAGAGCTGGGCCAATATATGGGTATATGTATAAGTATTCAGAACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGAGCTGGGCCAATATATGGGTATATGTATAAGTATTCAGAACAA  543

seq1  AGTTAGAAACTATATTGCTTTGAGAAATTGGCAGAAGGGGTTTGCCCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAACTATATTGCTTTGAGAAATTGGCAGAAGGGGTTTGCCCTCT  593

seq1  TGGGTTTATGACTTTGACATCCATGTTTACCTGACTGCATTTACAGTACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTATGACTTTGACATCCATGTTTACCTGACTGCATTTACAGTACC  643

seq1  AAACATAAATCCCTTATTAAAAGGACCTTGATGATAATTAAATAATTATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATCCCTTATTAAAAGGACCTTGATGATAATTAAATAATTATT  693

seq1  GGTTATCTTCAATATCAGAGTATTATAATTGTACCCTTGAGGATATCTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTTCAATATCAGAGTATTATAATTGTACCCTTGAGGATATCTTG  743

seq1  CCCGTCTCATAATCATGATAAGTAGACTTTACAATTGTTTTAGACAAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTCATAATCATGATAAGTAGACTTTACAATTGTTTTAGACAAAAA  793

seq1  AAAGTAACTTTAGTGTTTTCAACCCCAAGAGATTGATATATCTACAACAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACTTTAGTGTTTTCAACCCCAAGAGATTGATATATCTACAACAC  843

seq1  AAACCTGGCAGTTAGTGCATGGGGATTTACATGGAATAAGTGCTGGTTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGCAGTTAGTGCATGGGGATTTACATGGAATAAGTGCTGGTTAA  893

seq1  TATAGTCAGAATATAACTACCAGGTTCATTCCTTTCAAATAATGTCCTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCAGAATATAACTACCAGGTTCATTCCTTTCAAATAATGTCCTCA  943

seq1  AAACATAACGTGGAAAGTGAACCTATAAAACCTCAACAATATGGTTGTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACGTGGAAAGTGAACCTATAAAACCTCAACAATATGGTTGTCT  993

seq1  GAACCTCCTGGAATAATAACAGTATGCAACTCTCTGGAATAACACCAGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCTGGAATAATAACAGTATGCAACTCTCTGGAATAACACCAGTA  1043

seq1  TGGATTATTGTAACAAATTACAGTTTTTAAATGCAACCAGATACTTGGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTGTAACAAATTACAGTTTTTAAATGCAACCAGATACTTGGAT  1093

seq1  TTCTAGTGAGAAAGAATTC  1113
      |||||||||||||||||||
seq2  TTCTAGTGAGAAAGAATTC  1112


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