BAC Information

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BAC

Clone NameB6Ng01-338I17
Chromosome5 (Build37)
Map Location 128,481,042 - 128,482,130
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I17.bB6Ng01-338I17.g
ACCGA122814GA122815
length8841,077
definitionB6Ng01-338I17.b B6Ng01-338I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaggcatgcctggcatcagtgttgagaggtggcccaatcctgt
gtttatcaacaccacgatcacctgaaagcgtggttttgaggcagagaaat
cttgaatgatacattagcatagtcagctgtacattgctgtgataaaacat
caggaccaagagcaacctggggagaaaaggatcatttcagcttacagtcc
attaaccagggaagttaaggcaggaatctggaggcatgaactgatgcaga
ggtccaggaggagtgttgcttactggattgcttctcatggcttgttcaaa
cggctttcttatagcacccaggaccactggcctagggttggcactgccca
cagtgggctgggcatgctcatatcaatcaccaaccaggaaaatgtcccac
agatttgtctaccggccattctgatggagacattttgccaactgagagtc
tgagtcaaattctgtgtgttcatatatgtctatagatcaaaatgtatgtg
tatgttcatgtatgtcagatgcatgtacacatgtgtatgagtagaggtca
gaggtacctctaagtatcatttctcagggccccattaccatatcttttaa
agtatatccatgagtgtttcctgcatgcatgtatgtatgggtacctccaa
aggccaaaagagggtgtcagatcatcaggaactggggttatagatagtag
ttagccaccaggtgggtgctagaaatcaaacttgggtcctagcagcaagt
gatatctgagccatctttccctctccttctccccctacccccctctcccc
ctccccctctccccatctccccctcccttccctcactttccatccctgac
cgtctcccccctccccctctactcccctcccctc

gaattctgacctcttccctaacatttagacacagataagacaatgggtgc
agccctcacctcctcctcagagcagctgcctctgttcacatggtgtttct
gtttaaagcaggctcctcagctcacttgtatgccatcgttactccaggtc
ttcagagccccagagagtctgattttaaactgatctgctgtgcactcttg
gtaacaattgtctttacaacaccccagggaggtcctatcagcactcatga
tttaaactgagacaggatacagatgcttggtgggagccagggggaaagtg
gggttttccaatctagaggtaaccatggtgaggttcctagaggaaaggga
acttggaaaggtattagatccagatggtttccctcaaattcacatcaccc
caagtgcctcaaattttgagcatttggagatggacatacttaaggattca
cagaggatgtagttgagaggcgagagtcagttataggcaaattaaaacag
cgactaggcagcaaagattccccaagtagataaaaccacctgtacctttt
aagtgacctcaatctcctttgagttatgtcttggattatttttattgata
caaactaaagtcacctgagaagatcaaaccctgaagaattgcctcagtca
gattggcttgtggacaattctataaaagactatcttgggtggtgattgat
gtgggaaggccgggccactgtgggcgacaccatttcctaggtgctatata
agaaagcttgctaagcatggacctgcgagtgagccagtaagcagcatttc
tctgtgacctctgccttgagttcctgtttgagttctttcctgactcccct
caatggtgcactgtgacctggaaaggtaagccaaattaacctttttctcc
ccaactcacttttagttgtaggaaagcaactagaacaatttgtaacataa
acaaatttgactatttcttgcatgatgtcttaaagaagagctgactatca
cctattcatcagaactataaacagaggataatactattagatgttcaaca
ggcttagaaccaacacagtactgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128481042_128482130
seq2: B6Ng01-338I17.g_63_1139

seq1  GAATTCTGACCTCTTCCCTAACATTTAGACACAGATAAGACAATGGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCTCTTCCCTAACATTTAGACACAGATAAGACAATGGGTGC  50

seq1  AGCCCTCACCTCCTCCTCAGAGCAGCTGCCTCTGTTCACATGGTGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCACCTCCTCCTCAGAGCAGCTGCCTCTGTTCACATGGTGTTTCT  100

seq1  GTTTAAAGCAGGCTCCTCAGCTCACTTGTATGCCATCGTTACTCCAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGCAGGCTCCTCAGCTCACTTGTATGCCATCGTTACTCCAGGTC  150

seq1  TTCAGAGCCCCAGAGAGTCTGATTTTAAACTGATCTGCTGTGCACTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCCCCAGAGAGTCTGATTTTAAACTGATCTGCTGTGCACTCTTG  200

seq1  GTAACAATTGTCTTTACAACACCCCAGGGAGGTCCTATCAGCACTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATTGTCTTTACAACACCCCAGGGAGGTCCTATCAGCACTCATGA  250

seq1  TTTAAACTGAGACAGGATACAGATGCTTGGTGGGAGCCAGGGGGAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTGAGACAGGATACAGATGCTTGGTGGGAGCCAGGGGGAAAGTG  300

seq1  GGGTTTTCCAATCTAGAGGTAACCATGGTGAGGTTCCTAGAGGAAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCAATCTAGAGGTAACCATGGTGAGGTTCCTAGAGGAAAGGGA  350

seq1  ACTTGGAAAGGTATTAGATCCAGATGGTTTCCCTCAAATTCACATCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAAGGTATTAGATCCAGATGGTTTCCCTCAAATTCACATCACCC  400

seq1  CAAGTGCCTCAAATTTTGAGCATTTGGAGATGGACATACTTAAGGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCTCAAATTTTGAGCATTTGGAGATGGACATACTTAAGGATTCA  450

seq1  CAGAGGATGTAGTTGAGAGGCGAGAGTCAGTTATAGGCAAATTAAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATGTAGTTGAGAGGCGAGAGTCAGTTATAGGCAAATTAAAACAG  500

seq1  CGACTAGGCAGCAAAGATTCCCCAAGTAGATAAAACCACCTGTACCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAGGCAGCAAAGATTCCCCAAGTAGATAAAACCACCTGTACCTTTT  550

seq1  AAGTGACCTCAATCTCCTTTGAGTTATGTCTTGGATTATTTTTATTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCTCAATCTCCTTTGAGTTATGTCTTGGATTATTTTTATTGATA  600

seq1  CAAACTAAAGTCACCTGAGAAGATCAAACCCTGAAGAATTGCCTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAAGTCACCTGAGAAGATCAAACCCTGAAGAATTGCCTCAGTCA  650

seq1  GATTGGCTTGTGGACAATTCTATAAAAGACTATCTTGGGTGGTGATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTTGTGGACAATTCTATAAAAGACTATCTTGGGTGGTGATTGAT  700

seq1  GTGGGAAGGCCGGGCCACTGTGGGCGACACCATTTCCTAGGTGCTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGCCGGGCCACTGTGGGCGACACCATTTCCTAGGTGCTATATA  750

seq1  AGAAAGCTTGCTAAGCATGGACCTGCGAGTGAGCCAGTAAGCAGCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTTGCTAAGCATGGACCTGCGAGTGAGCCAGTAAGCAGCATTTC  800

seq1  TCTGTGACCTCTGCCTTGAGTTCCTGTTTGAGTTCTTTCCTGACTCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACCTCTGCCTTGAGTTCCTGTTTGAGTTCTTTCCTGACTCCCCT  850

seq1  CAATGGTGCACTGTGACCTGGAAAGGTAAGCCAAATTAACCTTTTTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGCACTGTGACCTGGAAAGGTAAGCCAAATTAACCTTTTTCTCC  900

seq1  CCAACTCACTTTTAGTTGTAGGAAAGCAAACTAGAACAATTTGTAAACAT  950
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CCAACTCACTTTTAGTTGTAGGAAAGC-AACTAGAACAATTTGT-AACAT  948

seq1  AAACAAAATTTGACTATTTCTTGCAATGATGTCTTAAGGAAGAGCTGAAC  1000
      |||| ||||||||||||||||||| |||||||||||| ||||||||| ||
seq2  AAAC-AAATTTGACTATTTCTTGC-ATGATGTCTTAAAGAAGAGCTG-AC  995

seq1  TATCACCCATTCAATCAGAAACTATAAACAGAAGGATAATACTAATTAAG  1050
      ||||||| |||| ||||| |||||||||||| ||||||||||| ||||  
seq2  TATCACCTATTC-ATCAG-AACTATAAACAG-AGGATAATACT-ATTA--  1039

seq1  GATGTTCCAACAGGC-TAG-ACCAACACAGGTAACTGAGTA  1089
      |||||| |||||||| ||| ||||||||||   ||||||||
seq2  GATGTT-CAACAGGCTTAGAACCAACACAG--TACTGAGTA  1077


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