BAC Information

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BAC

Clone NameB6Ng01-338M21
Chromosome5 (Build37)
Map Location 82,338,821 - 82,339,540
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039506, Lphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M21.bB6Ng01-338M21.g
ACCGA122984GA122985
length7211,181
definitionB6Ng01-338M21.b B6Ng01-338M21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttactacattattaagaatgactatattcattgtgtgaaaaa
tatcagaagagaacctccaaaaacgaattacacatctccctcttctctgg
gcattttatggaaattacagagaaaaaaaacccaccaaaatagcaacaac
aacaaaacaaaaccctcatagaaacaacaaaggagcaagaggctcatctg
tcaccaaccgcagagttcttcagcacaagaagttaaaggcgcttctagag
aacagcaacccacacaagattaaggaagaaagaaaggagaaaactttggc
cccgggcagtagatgtgtaagtacgcatagatcttctgaagtccaaggtc
agaatcagcacgtaggagaaatgaatatgggccagggagcaatcagcgca
gtgattcattaagcagctgcctgggaactgcctttttctttctttcgtaa
ataaatagtctgacagcgaggattttacctctaggctcaatacagagagc
tattccagaaagggtttgtaaccagccttggggggggggggggcttgctt
tcagaaaatgaagcacagtggaattaatgataaatagatttgtacaatgg
atatagggggaaatttttcaaacacacacacacacacacacacacacaca
cacacacagagtttttaaatttgttatatactattggggaaaatgaagtc
tcaatctggctggctgctaat

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacaggtctcccaa
tggagagctagagaaagtactcaaggagctaaagggatctcaaccctata
ggtggaacacatatgactaccagtacccctgagctcttgactctagctgc
atatgtatcaaacgatgcctagtcgcatcactgaagaagagccattggaa
accgcgaacttgtgtgctcgtacaggaccagctaggcgaaatgatgatta
ggaatacgtgacttatgtacgaccgtgacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82338821_82339540
seq2: B6Ng01-338M21.b_46_766

seq1  GAATTCATTTACTACATTATTAAGAATGACTATATTCATTGTGTGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACTACATTATTAAGAATGACTATATTCATTGTGTGAAAAA  50

seq1  TATCAGAAGAGAACCTCCAAAAACGAATTACACATCTCCCTCTTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAGAGAACCTCCAAAAACGAATTACACATCTCCCTCTTCTCTGG  100

seq1  GCATTTTATGGAAATTACAGAGAAAAAAAACCCACCAAAATAGCAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATGGAAATTACAGAGAAAAAAAACCCACCAAAATAGCAACAAC  150

seq1  AACAAAACAAAACCCTCATAGAAACAACAAAGGAGCAAGAGGCTCATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACCCTCATAGAAACAACAAAGGAGCAAGAGGCTCATCTG  200

seq1  TCACCAACCGCAGAGTTCTTCAGCACAAGAAGTTAAAGGCGCTTCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACCGCAGAGTTCTTCAGCACAAGAAGTTAAAGGCGCTTCTAGAG  250

seq1  AACAGCAACCCACACAAGATTAAGGAAGAAAGAAAGGAGAAAACTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACCCACACAAGATTAAGGAAGAAAGAAAGGAGAAAACTTTGGC  300

seq1  CCCGGGCAGTAGATGTGTAAGTACGCATAGATCTTCTGAAGTCCAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCAGTAGATGTGTAAGTACGCATAGATCTTCTGAAGTCCAAGGTC  350

seq1  AGAATCAGCACGTAGGAGAAATGAATATGGGCCAGGGAGCAATCAGCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGCACGTAGGAGAAATGAATATGGGCCAGGGAGCAATCAGCGCA  400

seq1  GTGATTCATTAAGCAGCTGCCTGGGAACTGCCTTTTTCTTTCTTTCGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCATTAAGCAGCTGCCTGGGAACTGCCTTTTTCTTTCTTTCGTAA  450

seq1  ATAAATAGTCTGACAGCGAGGATTTTACCTCTAGGCTCAATACAGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTCTGACAGCGAGGATTTTACCTCTAGGCTCAATACAGAGAGC  500

seq1  TATTCCAGAAAGGGTTTGTAACCAGCCTTGGGGGGGGGGGGGGCTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGAAAGGGTTTGTAACCAGCCTTGGGGGGGGGGGGGGCTTGCTT  550

seq1  TCAGAAAATGAAGCACAGTGGAATTAATGATAAATAGATTTGTACAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATGAAGCACAGTGGAATTAATGATAAATAGATTTGTACAATGG  600

seq1  ATATAGGGGGAAA-TTTTCAAACACACACACACACACACACACACACACA  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATAGGGGGAAATTTTTCAAACACACACACACACACACACACACACACA  650

seq1  CACACACAGAG-TTTTAAATTTGTCATATACTATTGGGGAAAATGACAGT  698
      ||||||||||| |||||||||||| ||||||||||||||||||||| |||
seq2  CACACACAGAGTTTTTAAATTTGTTATATACTATTGGGGAAAATGA-AGT  699

seq1  CTCCATCTGGCTGGCTGCTAGT  720
      ||| |||||||||||||||| |
seq2  CTCAATCTGGCTGGCTGCTAAT  721


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