BAC Information

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BAC

Clone NameB6Ng01-339E14
Chromosome5 (Build37)
Map Location 71,560,712 - 71,679,392
singlet/doubletdoublet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339E14.bB6Ng01-339E14.g
ACCGA123322GA123323
length1,0861,135
definitionB6Ng01-339E14.b B6Ng01-339E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,678,300 - 71,679,392)(71,560,712 - 71,561,849)
sequence
gaattcatgttctaaataataatatctgtaagacaacaaagacttcctac
caaagaaaaactgtgtgtagaattttacttcacattaattgttggttaaa
tgcaaattatttttgcagagttttgaagtacgaaacaaaactaattaggg
aagactttcaaaagggtagaaacaaaaagaatattctagcaaaattataa
aagaaaaatcacaatcattgagtctatttctcttttacctaaacatagca
tatacaaggaagtcacacgacttggactgagcaagaaaaatcaatttgga
taatgtcaatatctcatgttccctatgaacccctaaatacataacaataa
gataaatacttgaatatatactgtattttgttcccattctcatctaacac
tgatgaattaattttaagtcatttaatgtagtcttagatataaacatata
atgaattagaattaattcagatattagacttattatccgtgataatcacc
caaaaataaattcacatgaggaaagacttattttgggacatgacttcaga
atgttttctccgtggctccttggaatcagtatgggtctgtggtaagtaga
aaacagtgaagaatctttttctacttcacggtgaatatatgcagagtaga
gctaaggatatgattctaataatatataattctaatatctgatatgcaat
atacaatgtgtgatatgtaatatatgatatataatgtgtgatatgtaaaa
gaatattaaaagaatatgttatgtatatataatatttaactaagactcta
tttttgaaagtttccattaccacctaatatattgtcatcaagcaatgcct
aataaagccatcaatttatgattacatcagtggcttagtctgcaaaactg
ggtcagacttacttgatttaaccacttcttagttcttgtatcctctgctg
ggaatcaaccctattcagatccaaatcagccattctacttctggagtctc
cctctccacacaagctcgtggtcaataagcaagtccaactcattcctctg
taagagtcctatgcttaatctatcactctttcaaga
gaattctctgttcagttccataagccattttttgattgggttgtttgatt
tcttagtgtttagcttcttgagttctttatatattttggatattagccat
ctctcaaatgtggggctagtgaatattttttcccaatctgtaggttgcca
atttgtcctattggctatgtcttttgccttacagaagatttccagtttca
cgaatttatcaattttatcaatcaatttatcaattttagatcttaatgcc
tgttgcattggagttctgtttaagaaattacaccccatgccaatgagttc
aaggctctttcccacttttggcagatgtaaatgatctttgaaagatataa
tcataagaattataatctattataattttctttatggttaaaagccacac
aaggaccagttggttttttttgcttgtttgttttgttttgttttcagatt
taactgtatacatagccaacatggtttggttcaaaaaaagtatttaaaat
gtgtgcaagttttcttacatgctttcttatttaaaatgccctttttcata
caattatatttagattaataatgtagtcacatctagatgaatgaatttaa
tccaaaggtatttacctaaagatattcatggatggcaatggcacactaca
gtcatagtctttctacctttcttaaatagaaccagtgtacattagatgtt
tttctccatttttttatattgaacaagatagtaaagcaacatggattgga
atattcaagtgaaatacaaatataaggattactttttcccctatgaaaga
catgaccaaagctaaataagaaaaaatgaagcaaacacaaacagcaactg
agaaacgtaataatgtcaggatgacatggcatatctgtccttacaatgct
agtatcacttgcaagtagctggatatattagggacagcacatattatacc
gtttttaaaaataaccacacaaaggttgcccaggatactgagctttgtat
ttgtacaaaggcttgctctcccagtttagctttggttctacccaccccac
gtgatggtgtttggtgctataataattcaacttcaattttcagtactgct
catgctgctggccaagctgcacggaaggcttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71678300_71679392
seq2: B6Ng01-339E14.b_49_1134 (reverse)

seq1  TCTTGAAAGAGTGATAGGATTAAAGCATTGGGAACTCTTACAGAGGGAAT  50
      |||||||||||||||| |||| |||||| ||  ||||||||||| |||||
seq2  TCTTGAAAGAGTGATA-GATT-AAGCATAGG--ACTCTTACAGA-GGAAT  45

seq1  G-GGTGGACTTTGCCTTATGACCACGAGCCTGTGTGGAGAGGGAGGACCT  99
      | | ||||| |||| |  ||||||||||| |||||||||||||| |||  
seq2  GAGTTGGAC-TTGCTTATTGACCACGAGCTTGTGTGGAGAGGGA-GACTC  93

seq1  CAGAAGTAGAATGGCTTGATTTGGATCTGAATAGGGTTGATTCCCAGCAG  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGAATGGC-TGATTTGGATCTGAATAGGGTTGATTCCCAGCAG  142

seq1  AGGATACAAGAACTAAGAAGTGGTTAAATCAAGTAAGTTCTGA-CCAGTT  198
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  AGGATACAAGAACTAAGAAGTGGTTAAATCAAGTAAG-TCTGACCCAGTT  191

seq1  TTGCAGACTAAGCCACTGATGTAATCATAAATTGATGGCTTTATTAGGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACTAAGCCACTGATGTAATCATAAATTGATGGCTTTATTAGGCA  241

seq1  TTGCTTGATGACAATATATTAGGTGGTAATGGAAACTTTCAAAAATAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGATGACAATATATTAGGTGGTAATGGAAACTTTCAAAAATAGAG  291

seq1  TCTTAGTTAAATATTATATATACATAACATATTCTTTTAATATTCTTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTAAATATTATATATACATAACATATTCTTTTAATATTCTTTTA  341

seq1  CATATCACACATTATATATCATATATTACATATCACACATTGTATATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACACATTATATATCATATATTACATATCACACATTGTATATTGC  391

seq1  ATATCAGATATTAGAATTATATATTATTAGAATCATATCCTTAGCTCTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATATTAGAATTATATATTATTAGAATCATATCCTTAGCTCTAC  441

seq1  TCTGCATATATTCACCGTGAAGTAGAAAAAGATTCTTCACTGTTTTCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATATATTCACCGTGAAGTAGAAAAAGATTCTTCACTGTTTTCTAC  491

seq1  TTACCACAGACCCATACTGATTCCAAGGAGCCACGGAGAAAACATTCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAGACCCATACTGATTCCAAGGAGCCACGGAGAAAACATTCTGA  541

seq1  AGTCATGTCCCAAAATAAGTCTTTCCTCATGTGAATTTATTTTTGGGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTCCCAAAATAAGTCTTTCCTCATGTGAATTTATTTTTGGGTGA  591

seq1  TTATCACGGATAATAAGTCTAATATCTGAATTAATTCTAATTCATTATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACGGATAATAAGTCTAATATCTGAATTAATTCTAATTCATTATAT  641

seq1  GTTTATATCTAAGACTACATTAAATGACTTAAAATTAATTCATCAGTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATCTAAGACTACATTAAATGACTTAAAATTAATTCATCAGTGTT  691

seq1  AGATGAGAATGGGAACAAAATACAGTATATATTCAAGTATTTATCTTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGAATGGGAACAAAATACAGTATATATTCAAGTATTTATCTTATT  741

seq1  GTTATGTATTTAGGGGTTCATAGGGAACATGAGATATTGACATTATCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTATTTAGGGGTTCATAGGGAACATGAGATATTGACATTATCCAA  791

seq1  ATTGATTTTTCTTGCTCAGTCCAAGTCGTGTGACTTCCTTGTATATGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTTCTTGCTCAGTCCAAGTCGTGTGACTTCCTTGTATATGCTA  841

seq1  TGTTTAGGTAAAAGAGAAATAGACTCAATGATTGTGATTTTTCTTTTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGTAAAAGAGAAATAGACTCAATGATTGTGATTTTTCTTTTATA  891

seq1  ATTTTGCTAGAATATTCTTTTTGTTTCTACCCTTTTGAAAGTCTTCCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTAGAATATTCTTTTTGTTTCTACCCTTTTGAAAGTCTTCCCTA  941

seq1  ATTAGTTTTGTTTCGTACTTCAAAACTCTGCAAAAATAATTTGCATTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTGTTTCGTACTTCAAAACTCTGCAAAAATAATTTGCATTTAA  991

seq1  CCAACAATTAATGTGAAGTAAAATTCTACACACAGTTTTTCTTTGGTAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATTAATGTGAAGTAAAATTCTACACACAGTTTTTCTTTGGTAGG  1041

seq1  AAGTCTTTGTTGTCTTACAGATATTATTATTTAGAACATGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTGTTGTCTTACAGATATTATTATTTAGAACATGAATTC  1086

seq1: chr5_71560712_71561849
seq2: B6Ng01-339E14.g_70_1204

seq1  GAATTCTCTGTTCAGTTCCATAAGCCATTTTTTGATTGGGTTGTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCAGTTCCATAAGCCATTTTTTGATTGGGTTGTTTGATT  50

seq1  TCTTAGTGTTTAGCTTCTTGAGTTCTTTATATATTTTGGATATTAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGTTTAGCTTCTTGAGTTCTTTATATATTTTGGATATTAGCCAT  100

seq1  CTCTCAAATGTGGGGCTAGTGAATATTTTTTCCCAATCTGTAGGTTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAATGTGGGGCTAGTGAATATTTTTTCCCAATCTGTAGGTTGCCA  150

seq1  ATTTGTCCTATTGGCTATGTCTTTTGCCTTACAGAAGATTTCCAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTATTGGCTATGTCTTTTGCCTTACAGAAGATTTCCAGTTTCA  200

seq1  CGAATTTATCAATTTTATCAATCAATTTATCAATTTTAGATCTTAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTATCAATTTTATCAATCAATTTATCAATTTTAGATCTTAATGCC  250

seq1  TGTTGCATTGGAGTTCTGTTTAAGAAATTACACCCCATGCCAATGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATTGGAGTTCTGTTTAAGAAATTACACCCCATGCCAATGAGTTC  300

seq1  AAGGCTCTTTCCCACTTTTGGCAGATGTAAATGATCTTTGAAAGATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTTTCCCACTTTTGGCAGATGTAAATGATCTTTGAAAGATATAA  350

seq1  TCATAAGAATTATAATCTATTATAATTTTCTTTATGGTTAAAAGCCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGAATTATAATCTATTATAATTTTCTTTATGGTTAAAAGCCACAC  400

seq1  AAGGACCAGTTGGTTTTTTTTGCTTGTTTGTTTTGTTTTGTTTTCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAGTTGGTTTTTTTTGCTTGTTTGTTTTGTTTTGTTTTCAGATT  450

seq1  TAACTGTATACATAGCCAACATGGTTTGGTTCAAAAAAAGTATTTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTATACATAGCCAACATGGTTTGGTTCAAAAAAAGTATTTAAAAT  500

seq1  GTGTGCAAGTTTTCTTACATGCTTTCTTATTTAAAATGCCCTTTTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAGTTTTCTTACATGCTTTCTTATTTAAAATGCCCTTTTTCATA  550

seq1  CAATTATATTTAGATTAATAATGTAGTCACATCTAGATGAATGAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATATTTAGATTAATAATGTAGTCACATCTAGATGAATGAATTTAA  600

seq1  TCCAAAGGTATTTACCTAAAGATATTCATGGATGGCAATGGCACACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTATTTACCTAAAGATATTCATGGATGGCAATGGCACACTACA  650

seq1  GTCATAGTCTTTCTACCTTTCTTAAATAGAACCAGTGTACATTAGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTCTTTCTACCTTTCTTAAATAGAACCAGTGTACATTAGATGTT  700

seq1  TTTCTCCATTTTTTTATATTGAACAAGATAGTAAAGCAACATGGATTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATTTTTTTATATTGAACAAGATAGTAAAGCAACATGGATTGGA  750

seq1  ATATTCAAGTGAAATACAAATATAAGGATTAC-TTTTCCCCTATGAAAGA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATTCAAGTGAAATACAAATATAAGGATTACTTTTTCCCCTATGAAAGA  800

seq1  CATGACCAAAGCTAAATAAGAAAAAATGAAGCAAACACAAACAGCAACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAAGCTAAATAAGAAAAAATGAAGCAAACACAAACAGCAACTG  850

seq1  AGAAACGTAATAATGTCAGGATGACATGCCATATCTGTCCTTACAATGCT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAAACGTAATAATGTCAGGATGACATGGCATATCTGTCCTTACAATGCT  900

seq1  AGTATCACTTTGCAAGTAGCTGGATATATTAGGAACAGCACAATATTATA  949
      |||||||| |||||||||||||||||||||||| ||||||| ||||||||
seq2  AGTATCAC-TTGCAAGTAGCTGGATATATTAGGGACAGCAC-ATATTATA  948

seq1  CCGTTTTTAAAAAATAACCCAACACAAAAGGTTG-CCAAGATACTGAGCT  998
      |||||||| ||||||||||  |||| |||||||| ||| |||||||||| 
seq2  CCGTTTTT-AAAAATAACC--ACAC-AAAGGTTGCCCAGGATACTGAGC-  993

seq1  TTTGTA-TTGTACAAA-GCTTGCTCTCCCAG-TTAGCTTT-GTTCTACCC  1044
      |||||| ||||||||| |||||||||||||| |||||||| |||||||||
seq2  TTTGTATTTGTACAAAGGCTTGCTCTCCCAGTTTAGCTTTGGTTCTACCC  1043

seq1  ACCCCACGTGATGGTGTTTGTTGCTATAGTTAAATCCAACTTTCATTTTC  1094
      |||||||||||||||||||| ||||||| |  ||| ||||||  ||||||
seq2  ACCCCACGTGATGGTGTTTGGTGCTATAAT--AATTCAACTTCAATTTTC  1091

seq1  AGTACTGCTTCATGCTGCT-GCAGAGCTGCACGAAAGGCTGGCAA  1138
      |||||||| |||||||||| ||  ||||||||| |||||| ||||
seq2  AGTACTGC-TCATGCTGCTGGCCAAGCTGCACGGAAGGCTTGCAA  1135