BAC Information

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BAC

Clone NameB6Ng01-339F03
Chromosome5 (Build37)
Map Location 58,190,110 - 58,313,360
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F03.bB6Ng01-339F03.g
ACCGA123346GA123347
length1,0991,086
definitionB6Ng01-339F03.b B6Ng01-339F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,190,110 - 58,191,219)(58,312,277 - 58,313,360)
sequence
gaattcatttgattctatgaatgggatattttcatgttttctgggaaatt
taacattgtgcatattatcagccattaaataaacatttactgactagatg
aagtatattaggcttgcacatattccattaaaaggaaggattaaatggtt
gataacacattcataggctctgtttgctcacgttctttgatattttttgt
agaagttaagcggtgtgaaaataaataaatgtcacctatatgtaataaat
acatcatataaagagtcagagagctagtggaagtataagtattaaggcta
gatggcataaaaggaactgtgaaccagacaaaaagtgttaaggcattata
ttccatgttaaagtgattcaagttgatttgagaagaaattgaagtcaggg
aactgtggtctctatacacaaaagggtagaagtattggattgttggtaaa
acaatgtgtatggcataacataaaaagaaatgtgggtagaggagatgaac
agcacttaaaagattttatttgcatgcttagatgaaacacaattcctttt
agaatctcaattttagtggcctcactttacgtgggataagaagtaatgaa
tccaaactggagccatctgtagacatcaatgcagtgccattctctggaga
tttatctcattgctagagcagtaagtatagttgggagcaacaaaaccaca
tgtactcagggtttacaaatacagagacggaccattcttttagcaaagtt
aagttttacctgtaatagcatagtaaatttatgtggcatgtggggcatat
agaaaacctgattatattttaaaaatcctcatgttctaatgcagaagaat
caaagagactccatgacattaaagtgtaatctgaaggaagccatgcccac
gaggctatgctgaaatcataggctaggaatccaacaaatccattgtattc
cctgtctactatagtctagatcagtggctctcacttgtagtcttgaccca
ttagggttcagtgacccttcacagggtgcatatcagatatcctacatatc
agaatattacatatattgtaatagcagcaaattacattatgaagtcgca

gaattcctacaaagcaacaatgaacacagagaaaactgacttggcattgg
tgatacatttgcatagatagcacaaagtaaaaaggctcagcctcctgcaa
aatcattattaggaagtcttcacaggaagcagaaagtgggactttcttct
tttgggttccccacattcagtaaaggcatcacactctggtggtctcgtgt
ctgtatgaaacgtgacacacttagacgatctctgtgctatacggttcaaa
tgtatttcccagtccatttccattttcatggttttctgttctgaagcaca
tctacttgtgtggttttaatgaaatttgattgcactattcactattgcag
tatcaaggatctttgaatcccaatacccaatgctttgataatgaccatgg
caatattctcactaactcggtcaccccataaatgtaaaaattcaaatatt
gttttagttacaactctgtgaaatggacacattttaagcacagtaaaata
aatatattacttataacattagctcttttatactacttttccacatttaa
ttattttcaccgaattctacctcacaatattcaaggatgtagaaagcaaa
gagcattccgcttcgcctcttgaattggaattcagtagactaaatgcttt
actcacaataaatggttgcatttagctctgaattctcacaatattccaaa
ttctggacttgtacagagtttccactataacatctatgaactttctctgg
gggtttgggtttcatggcatatggcctcacacagaagagaaacaatacac
gcaattcaggaaaagaaactgtaactcagagcaatgcaatctcagagcca
tgtgcatgttgtaggtcgtgtattggtctccagggatctctccaaagtag
acggtgatcattttacagcagatattaaaataaaaagatgggaaaacatg
tttaaaaataggaaccctgcagagattttgaagcagcttggttgccagat
tttaatgatatgtttatttctgaaggcactttagactgacatactttttc
atttggaaccacatttagtataaaagtcatttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58190110_58191219
seq2: B6Ng01-339F03.b_44_1142

seq1  GAATTCATTTGATTCTATGAATGGGATATTTTCATGTTTTCTGGGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGATTCTATGAATGGGATATTTTCATGTTTTCTGGGAAATT  50

seq1  TAACATTGTGCATATTATCAGCCATTAAATAAACATTTACTGACTAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGTGCATATTATCAGCCATTAAATAAACATTTACTGACTAGATG  100

seq1  AAGTATATTAGGCTTGCACATATTCCATTAAAAGGAAGGATTAAATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTAGGCTTGCACATATTCCATTAAAAGGAAGGATTAAATGGTT  150

seq1  GATAACACATTCATAGGCTCTGTTTGCTCACGTTCTTTGATATTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACATTCATAGGCTCTGTTTGCTCACGTTCTTTGATATTTTTTGT  200

seq1  AGAAGTTAAGCGGTGTGAAAATAAATAAATGTCACCTATATGTAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAAGCGGTGTGAAAATAAATAAATGTCACCTATATGTAATAAAT  250

seq1  ACATCATATAAAGAGTCAGAGAGCTAGTGGAAGTATAAGTATTAAGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATATAAAGAGTCAGAGAGCTAGTGGAAGTATAAGTATTAAGGCTA  300

seq1  GATGGCATAAAAGGAACTGTGAACCAGACAAAAAGTGTTAAGGCATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATAAAAGGAACTGTGAACCAGACAAAAAGTGTTAAGGCATTATA  350

seq1  TTCCATGTTAAAGTGATTCAAGTTGATTTGAGAAGAAATTGAAGTCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTTAAAGTGATTCAAGTTGATTTGAGAAGAAATTGAAGTCAGGG  400

seq1  AACTGTGGTCTCTATACACAAAAGGGTAGAAGTATTGGATTGTTGGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGTCTCTATACACAAAAGGGTAGAAGTATTGGATTGTTGGTAAA  450

seq1  ACAATGTGTATGGCATAACATAAAAAGAAATGTGGGTAGAGGAGATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGTATGGCATAACATAAAAAGAAATGTGGGTAGAGGAGATGAAC  500

seq1  AGCACTTAAAAGATTTTATTTGCATGCTTAGATGAAACACAATTCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAAAAGATTTTATTTGCATGCTTAGATGAAACACAATTCCTTTT  550

seq1  AGAATCTCAATTTTAGTGGCCTCACTTTACGTGGGATAAGAAGTAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCAATTTTAGTGGCCTCACTTTACGTGGGATAAGAAGTAATGAA  600

seq1  TCCAAACTGGAGCCATCTGTAGACATCAATGCAGTGCCATTCTCTGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTGGAGCCATCTGTAGACATCAATGCAGTGCCATTCTCTGGAGA  650

seq1  TTTATCTCATTGCTAGAGCAGTAAGTATAGTTGGGAGCAACAAAACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCATTGCTAGAGCAGTAAGTATAGTTGGGAGCAACAAAACCACA  700

seq1  TGTACTCAGGGTTTACAAATACAGAGACGGACCATTCTTTTAGCAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGGGTTTACAAATACAGAGACGGACCATTCTTTTAGCAAAGTT  750

seq1  AAGTTTTACCTGTAATAGCATAGTAAATTTATGTGGCATGTGGGGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACCTGTAATAGCATAGTAAATTTATGTGGCATGTGGGGCATAT  800

seq1  AGAAAACCTGATTATATTTTAAAAATCCTCATGTTCTAATGCAGAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTGATTATATTTTAAAAATCCTCATGTTCTAATGCAGAAGAAT  850

seq1  CAAAGAGACTCCATGACATTAAAGTGTAATCTGAAGGAAGCCATGCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACTCCATGACATTAAAGTGTAATCTGAAGGAAGCCATGCCCAC  900

seq1  GAGGCTATGCTGAAATCATAGGCTAGGAATCCAACAAATCCATTGTATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGCTGAAATCATAGGCTAGGAATCCAACAAATCCATTGTATTC  950

seq1  CCTGTCTACTATAGTCTAGATCAGTGGTTCTCAACTTGTAGGTCTTGACC  1000
      ||||||||||||||||||||||||||| |||| ||||||| |||||||||
seq2  CCTGTCTACTATAGTCTAGATCAGTGGCTCTC-ACTTGTA-GTCTTGACC  998

seq1  CATTTAGGGGTCCAGTGACCCTTTCACAGGGGTTGCATATCAGATATCCT  1050
      ||||   |||| ||||||||| |||||||||  |||||||||||||||||
seq2  CATT--AGGGTTCAGTGACCC-TTCACAGGG--TGCATATCAGATATCCT  1043

seq1  ACATATCAGATATTTACATTATAATTTGTAATAGCAGCAAATTTACATTA  1100
      ||||||||||   ||||| ||||  |||||||||||||||| ||||||||
seq2  ACATATCAGAATATTACA-TATA--TTGTAATAGCAGCAAA-TTACATTA  1089

seq1  TGAAGTCGCA  1110
      ||||||||||
seq2  TGAAGTCGCA  1099


seq1: chr5_58312277_58313360
seq2: B6Ng01-339F03.g_65_1150 (reverse)

seq1  AAGGAAAATGACCTTTTATACTATATGTG--TTCAAATG-AAAAGTATGT  47
      |||| |||||| ||||||||||| |||||  | |||||| ||||||||||
seq2  AAGG-AAATGA-CTTTTATACTAAATGTGGTTCCAAATGAAAAAGTATGT  48

seq1  CAAGTCTAAAGTTGCTTCAGAAATAAACATATCA-TAAAATCTGCCA--C  94
      | ||||||||||  |||||||||||||||||||| ||||||||| ||  |
seq2  C-AGTCTAAAGTGCCTTCAGAAATAAACATATCATTAAAATCTGGCAACC  97

seq1  AAGCTGCTTCAAAATCTTCTGCAGGGTTTCTTATTTTTAAACATGTTTTT  144
      |||||||||||||||| ||||||||| ||| |||||||||||||||||| 
seq2  AAGCTGCTTCAAAATC-TCTGCAGGG-TTCCTATTTTTAAACATGTTTTC  145

seq1  CCATC-TTTTATTTTAATATCTGCTGTAAAATGATCACCGTCTACTTTGG  193
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTTATTTTAATATCTGCTGTAAAATGATCACCGTCTACTTTGG  195

seq1  AGAGATCCCTGGAGACCAATACACGACCTACAACATGCACATGGCTCTGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCCTGGAGACCAATACACGACCTACAACATGCACATGGCTCTGA  245

seq1  GATTGCATTGCTCTGAGTTACAGTTTCTTTTCCTGAATTGCGTGTATTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATTGCTCTGAGTTACAGTTTCTTTTCCTGAATTGCGTGTATTGT  295

seq1  TTCTCTTCTGTGTGAGGCCATATGCCATGAAACCCAAACCCCCAGAGAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTGTGTGAGGCCATATGCCATGAAACCCAAACCCCCAGAGAAA  345

seq1  GTTCATAGATGTTATAGTGGAAACTCTGTACAAGTCCAGAATTTGGAATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGATGTTATAGTGGAAACTCTGTACAAGTCCAGAATTTGGAATA  395

seq1  TTGTGAGAATTCAGAGCTAAATGCAACCATTTATTGTGAGTAAAGCATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATTCAGAGCTAAATGCAACCATTTATTGTGAGTAAAGCATTT  445

seq1  AGTCTACTGAATTCCAATTCAAGAGGCGAAGCGGAATGCTCTTTGCTTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTGAATTCCAATTCAAGAGGCGAAGCGGAATGCTCTTTGCTTTC  495

seq1  TACATCCTTGAATATTGTGAGGTAGAATTCGGTGAAAATAATTAAATGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTTGAATATTGTGAGGTAGAATTCGGTGAAAATAATTAAATGTG  545

seq1  GAAAAGTAGTATAAAAGAGCTAATGTTATAAGTAATATATTTATTTTACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGTATAAAAGAGCTAATGTTATAAGTAATATATTTATTTTACT  595

seq1  GTGCTTAAAATGTGTCCATTTCACAGAGTTGTAACTAAAACAATATTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAAATGTGTCCATTTCACAGAGTTGTAACTAAAACAATATTTGA  645

seq1  ATTTTTACATTTATGGGGTGACCGAGTTAGTGAGAATATTGCCATGGTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACATTTATGGGGTGACCGAGTTAGTGAGAATATTGCCATGGTCA  695

seq1  TTATCAAAGCATTGGGTATTGGGATTCAAAGATCCTTGATACTGCAATAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGCATTGGGTATTGGGATTCAAAGATCCTTGATACTGCAATAG  745

seq1  TGAATAGTGCAATCAAATTTCATTAAAACCACACAAGTAGATGTGCTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTGCAATCAAATTTCATTAAAACCACACAAGTAGATGTGCTTCA  795

seq1  GAACAGAAAACCATGAAAATGGAAATGGACTGGGAAATACATTTGAACCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAACCATGAAAATGGAAATGGACTGGGAAATACATTTGAACCG  845

seq1  TATAGCACAGAGATCGTCTAAGTGTGTCACGTTTCATACAGACACGAGAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCACAGAGATCGTCTAAGTGTGTCACGTTTCATACAGACACGAGAC  895

seq1  CACCAGAGTGTGATGCCTTTACTGAATGTGGGGAACCCAAAAGAAGAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGTGTGATGCCTTTACTGAATGTGGGGAACCCAAAAGAAGAAAG  945

seq1  TCCCACTTTCTGCTTCCTGTGAAGACTTCCTAATAATGATTTTGCAGGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTCTGCTTCCTGTGAAGACTTCCTAATAATGATTTTGCAGGAG  995

seq1  GCTGAGCCTTTTTACTTTGTGCTATCTATGCAAATGTATCACCAATGCCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCTTTTTACTTTGTGCTATCTATGCAAATGTATCACCAATGCCA  1045

seq1  AGTCAGTTTTCTCTGTGTTCATTGTTGCTTTGTAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTTCTCTGTGTTCATTGTTGCTTTGTAGGAATTC  1086


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