BAC Information

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BAC

Clone NameB6Ng01-339F19
Chromosome5 (Build37)
Map Location 78,484,512 - 78,691,217
singlet/doubletdoublet
Overlap geneLOC100039398
Upstream gene1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F19.bB6Ng01-339F19.g
ACCGA123376GA123377
length1,084548
definitionB6Ng01-339F19.b B6Ng01-339F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,484,512 - 78,485,591)(78,690,664 - 78,691,217)
sequence
gaattctaacctcttatgtggctgtatctggtagtaggaacctttgggag
gtaattcagatgagagtgaaccttatgaatgtagttcagctctcatgaaa
gagagcctagatagtcctctactacttctttattgcgtatgagcataaag
tgagtggctgacagattgaaatcacatgaaagctacagaaggaattgact
ttgctagctccatcttcttaaacatccacttttagactgtggaagaaaat
tcatggttcagagtcacatacaaaccactcaaagacataccatactctaa
caaacccccctcccaactcaataagggagagactaacaaaggaatatgca
ttgtgacaggaaaagactgctttataaatgagcatctaaaatctagcctg
aggtaagggaagatgttggaactaaagaagcagcaaaaggaaaactttgg
agattagatttgattgttatccagggctttggtttccgtcttaatacttc
taagatgatgattcttgatcagctggatctttttgacactctgtgttgat
atgcttgatcttaatttttcatccttgaatgataacaattgtagaataca
ggctctaacttctcaaatggacattacaatctaagattcattctaagaac
tcatttgttacactaggtctgggaaaacacacttctggcatttcaccaat
ttatttgacttggcaagggatagttcagagttatgtttctgtcctggtgt
ttccatttctagtttatctcaagaattcaaccactgaattttaatggagc
agcagggctgataagggaaaatcaaaactttcaaatgattttattcttta
cccaaaagaaactggagaaaacaagcaaagactatttgagaaaattggat
tcctctcatttaggaaattccaatttgctgcatgttgacatcacatagag
ggatacatacaatagcatatatttgcctctgtaccttatgtaaaatactg
ggaagaaatgagctcagttattattatttgatcttgtttaccatgatcag
atcatttgagaaggatcagttaggatccatagtt

ataaaagataagtaacattagagagaaagttggttgataagagccacagt
ggtaactaaaaggataagcatatgatattattcttcacgattgttaatct
gacattgatagtgagtagcaaaaataatgcttagcaagactataaagtga
gccagaacaaaacagtccagaaaatcagtccagaggtcagagaggttctc
agactgtgtgaacaggcttcatatcatgtacccacggactgcaaaaagtt
aaagactgggaaacagttaaataataacccatcaaccaacaaataaccaa
taactgaaatagtgacaaaatggaatccagaaaaactgcaatacaaataa
taagagaacaagcagaaacagaaaactagaatatagatattatgattaaa
attgtgcataaaagtacaacaaatgtaaaaggccatgtatataaattaaa
aggcaaaggagtgtcataataaataaaaataaaagatcaagacccagatg
tgtgctagttagcaaaaactaagtatagtgtgtgggggggaagagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78484512_78485591
seq2: B6Ng01-339F19.b_49_1132

seq1  GAATTCTAACCTCTTATGTGGCTGTATCTGGTAGTAGGAACCTTTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCTCTTATGTGGCTGTATCTGGTAGTAGGAACCTTTGGGAG  50

seq1  GTAATTCAGATGAGAGTGAACCTTATGAATGTAGTTCAGCTCTCATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAGATGAGAGTGAACCTTATGAATGTAGTTCAGCTCTCATGAAA  100

seq1  GAGAGCCTAGATAGTCCTCTACTACTTCTTTATTGCGTATGAGCATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTAGATAGTCCTCTACTACTTCTTTATTGCGTATGAGCATAAAG  150

seq1  TGAGTGGCTGACAGATTGAAATCACATGAAAGCTACAGAAGGAATTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTGACAGATTGAAATCACATGAAAGCTACAGAAGGAATTGACT  200

seq1  TTGCTAGCTCCATCTTCTTAAACATCCACTTTTAGACTGTGGAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTCCATCTTCTTAAACATCCACTTTTAGACTGTGGAAGAAAAT  250

seq1  TCATGGTTCAGAGTCACATACAAACCACTCAAAGACATACCATACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTCAGAGTCACATACAAACCACTCAAAGACATACCATACTCTAA  300

seq1  CAAACCCCCCTCCCAACTCAATAAGGGAGAGACTAACAAAGGAATATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCCCTCCCAACTCAATAAGGGAGAGACTAACAAAGGAATATGCA  350

seq1  TTGTGACAGGAAAAGACTGCTTTATAAATGAGCATCTAAAATCTAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAGGAAAAGACTGCTTTATAAATGAGCATCTAAAATCTAGCCTG  400

seq1  AGGTAAGGGAAGATGTTGGAACTAAAGAAGCAGCAAAAGGAAAACTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGGAAGATGTTGGAACTAAAGAAGCAGCAAAAGGAAAACTTTGG  450

seq1  AGATTAGATTTGATTGTTATCCAGGGCTTTGGTTTCCGTCTTAATACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGATTTGATTGTTATCCAGGGCTTTGGTTTCCGTCTTAATACTTC  500

seq1  TAAGATGATGATTCTTGATCAGCTGGATCTTTTTGACACTCTGTGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGATGATTCTTGATCAGCTGGATCTTTTTGACACTCTGTGTTGAT  550

seq1  ATGCTTGATCTTAATTTTTCATCCTTGAATGATAACAATTGTAGAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGATCTTAATTTTTCATCCTTGAATGATAACAATTGTAGAATACA  600

seq1  GGCTCTAACTTCTCAAATGGACATTACAATCTAAGATTCATTCTAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAACTTCTCAAATGGACATTACAATCTAAGATTCATTCTAAGAAC  650

seq1  TCATTTGTTACACTAGGTCTGGGAAAACACACTTCTGGCATTTCACCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTACACTAGGTCTGGGAAAACACACTTCTGGCATTTCACCAAT  700

seq1  TTATTTGACTTGGCAAGGGATAGTTCAGAGTTATGTTTCTGTCCTGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGACTTGGCAAGGGATAGTTCAGAGTTATGTTTCTGTCCTGGTGT  750

seq1  TTCCATTTCTAGTTTATCTCAAGAATTCAACCACTGAATTTTAATGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCTAGTTTATCTCAAGAATTCAACCACTGAATTTTAATGGAGC  800

seq1  AGCAGGGCTGATAAGGGAAAATCAAAACTTTCAAATGATTTTATTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTGATAAGGGAAAATCAAAACTTTCAAATGATTTTATTCTTTA  850

seq1  CCCAAAAGAAACTGGAGAAAACAAGCAAAGACTATTTGAGAAAATTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGAAACTGGAGAAAACAAGCAAAGACTATTTGAGAAAATTGGAT  900

seq1  TCCTCTCATTTAGGAAATTCCAATTTGCTGCATGTTGACATCACATAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCATTTAGGAAATTCCAATTTGCTGCATGTTGACATCACATAGAG  950

seq1  GGATACAATACAATAGCATATATTTGCCTCTGTACCTTATGTAAAATACT  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAC-ATACAATAGCATATATTTGCCTCTGTACCTTATGTAAAATACT  999

seq1  -GGAAGAAATGAGCTCAGGTTATA-TATTTGATC-TGTTTACCATGATCA  1047
       ||||||||||||||||| |  || ||||||||| |||||||||||||||
seq2  GGGAAGAAATGAGCTCAGTTATTATTATTTGATCTTGTTTACCATGATCA  1049

seq1  GATTCATTTGAGAAGGATCAGT--AGAT-CATAGTT  1080
      || |||||||||||||||||||   ||| |||||||
seq2  GA-TCATTTGAGAAGGATCAGTTAGGATCCATAGTT  1084


seq1: chr5_78690664_78691217
seq2: B6Ng01-339F19.g_66_619 (reverse)

seq1  TCACTCTTCCCCCCCACACACTATACTTAGTTTTTGCTAACTAGCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTCCCCCCCACACACTATACTTAGTTTTTGCTAACTAGCACACA  50

seq1  TCTGGGTCTTGATCTTTTATTTTTATTTATTATGACACTCCTTTGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTTGATCTTTTATTTTTATTTATTATGACACTCCTTTGCCTTT  100

seq1  TAATTTATATACATGGCCTTTTACATTTGTTGTACTTTTATGCACAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATATACATGGCCTTTTACATTTGTTGTACTTTTATGCACAATTT  150

seq1  TAATCATAATATCTATATTCTAGTTTTCTGTTTCTGCTTGTTCTCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAATATCTATATTCTAGTTTTCTGTTTCTGCTTGTTCTCTTATT  200

seq1  ATTTGTATTGCAGTTTTTCTGGATTCCATTTTGTCACTATTTCAGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTGCAGTTTTTCTGGATTCCATTTTGTCACTATTTCAGTTATT  250

seq1  GGTTATTTGTTGGTTGATGGGTTATTATTTAACTGTTTCCCAGTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGTTGGTTGATGGGTTATTATTTAACTGTTTCCCAGTCTTTAA  300

seq1  CTTTTTGCAGTCCGTGGGTACATGATATGAAGCCTGTTCACACAGTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCAGTCCGTGGGTACATGATATGAAGCCTGTTCACACAGTCTGA  350

seq1  GAACCTCTCTGACCTCTGGACTGATTTTCTGGACTGTTTTGTTCTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTCTGACCTCTGGACTGATTTTCTGGACTGTTTTGTTCTGGCTC  400

seq1  ACTTTATAGTCTTGCTAAGCATTATTTTTGCTACTCACTATCAATGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAGTCTTGCTAAGCATTATTTTTGCTACTCACTATCAATGTCAG  450

seq1  ATTAACAATCGTGAAGAATAATATCATATGCTTATCCTTTTAGTTACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATCGTGAAGAATAATATCATATGCTTATCCTTTTAGTTACCAC  500

seq1  TGTGGCTCTTATCAACCAACTTTCTCTCTAATGTTACTTATCTTTTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTTATCAACCAACTTTCTCTCTAATGTTACTTATCTTTTATGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


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