BAC Information

Click to search

BAC

Clone NameB6Ng01-339K04
Chromosome5 (Build37)
Map Location 48,751,351 - 48,891,029
singlet/doubletdoublet
Overlap gene4933428G09Rik, Kcnip4
Upstream geneLOC100040865, LOC100040876, Slit2
Downstream geneLOC100041668, LOC100041659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339K04.bB6Ng01-339K04.g
ACCGA123577GA123578
length1,177906
definitionB6Ng01-339K04.b B6Ng01-339K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,889,860 - 48,891,029)(48,751,351 - 48,752,264)
sequence
gaattcaccaagataaggaatacagaaggataagggaaatgagttgaaga
gaataatagcatgacatcagacatcataagatgcctgaagaaaatatgga
atccttaaaaaaactgaagcaagccggaaacaggctttattgttaattag
tgtagctttttctcttttggggggtgttagggtttgcctgtttgataaaa
ttttgaaattttttgttttctactttttatgactattacttcaagtcaaa
tttgtcagtctaataacatatagagtaatacaatgaaaaagattcttata
caaatgttgagtctggttcaccacccatcttaattttattaatactggga
tgctgttcacctgcatagctaacaagagttttacaaactcttttccattt
gcattgacctaagaaataaaattcaggctaaataagagtccagtcaataa
ggcttgattctgccagcttcctttagacactgaaatgggaactgaatact
tcaaacagactcaattttccactccaccaggtatataaaatacagactat
ggctacattatctgcttcgattgcagggttaaagcttagctgcttacttt
caaaatgccttcttgccaagggatttagagtagcagggttgatgtgcagc
ctcccttcaagaaacattggtccaactttgcctgacaagtttcattataa
agatagaagataaggcgagttatgaagatgaactttgtgacgtgaacaca
aatattcagttgatagataatttttttaaaggtgaggtttggaaaggtta
aatactttctttagtgcagaactgtgaaagagatccagaagggggaaaat
agaatttttgtgctaactgcatgatttcctaaaaataatgtggatatggg
ttctagtcattgtgttgaaggaagacagtagactttaatgttgaacagag
tacaacaaataacaaattccatttattgctcaaatgtttactagatgcca
aatgcacatctatttagtatgtcagcacacagtcctctaaggaactactt
tatgtcaatctttattgtcattaaatatatggaggagcaagcattacctg
agtttggtaaagatttcaccttggatcaaataaatattcctaactttgct
tggaccttaacaatcgtatagttttct
gaattctattaagaaacttggtcctttgcctctctctctctctctctctc
tctctctctctctctctctctctctctctgtgtgggtgtgtgtgtgtgtg
tctctgaagaccactgtgggtgggaagtatttctctgtgtacattatgta
tgtcctggggattggctgaaggttctcaggctcttttacctacagagtga
ttgtgttcgaggctgcaaaaaggaactggaagatgcattctgggttaagg
attttgaaattggaaacattctagactatgggggcagtctactatccttg
gatataactaagtcctaccaactttcgatgtgagaagtgtgatctttacc
atagtaatattgacaatgagttatattggattagtctgagatgttttctg
gatcccctgctcccttcctgagcgcacggctgaacttgtcgcccccgagc
tttaactactgtagttactccaggttttggctcttaccttaatacctcct
ccttatttcattaggttctgaaatgtagagttgctcattctttggagaac
atggggctagctgccatgattaaggcgaaatctcgtctgatttcttcctc
ttgtgtgtgctgccaccatgatctgattcctcaaaacatgacgtaacttc
aggcatccttttccgcgcagccatctcgtgagctgcatcacataaggaga
taactaatatttttttttctttacagtatgcatgctaggttacttcctgg
tgacacgggacagcagcgagacaatattgtgtaatcaatgatcattacat
ggatcatcgtagcagagtaagacttaaatagttttacagtttggtaaggc
tattctaccagcttatgtggataagaggagaggggcctcaaggtgtcaat
catgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48889860_48891029
seq2: B6Ng01-339K04.b_48_1224 (reverse)

seq1  AGAAAA-TATAAGATTGTTAA-GTTCAAGCAAAATTTAGAA-ATTTATTA  47
      |||||| |||| ||||||||| || |||||||| ||  ||| ||||||| 
seq2  AGAAAACTATACGATTGTTAAGGTCCAAGCAAAGTTAGGAATATTTATTT  50

seq1  TATGACCAGGTG-AATCTTTACAAAACTCA-GTATGGCTTTGCTCCT-CA  94
       ||  | ||||| ||||||||| ||||||| |||  || |||||||| ||
seq2  GAT-CCAAGGTGAAATCTTTACCAAACTCAGGTAATGC-TTGCTCCTCCA  98

seq1  TATATTTAATGACA--TAAGATTGACATAAAGTAGTCCTTTAGAGGACTG  142
      ||||||||||||||   ||||||||||||||||||| | |||||||||||
seq2  TATATTTAATGACAATAAAGATTGACATAAAGTAGTTCCTTAGAGGACTG  148

seq1  TGTGCCTGAACATACTAAATAGATGTGCATTTGGCATCTAGTAAACATTT  192
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTG-CTG-ACATACTAAATAGATGTGCATTTGGCATCTAGTAAACATTT  196

seq1  GAGCAAT-AATGGAATTTGTTATTTGTTGTACTCTGTTTCAACATTAAAG  241
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCAATAAATGGAATTTGTTATTTGTTGTACTCTG-TTCAACATTAAAG  245

seq1  TCTACTGTCTTCC-TCAACACAATGACTAGAA-CCATATCCACATTATTT  289
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TCTACTGTCTTCCTTCAACACAATGACTAGAACCCATATCCACATTATTT  295

seq1  TTAGGAAATCATGCAGTTAGCACAAAAATTCTATTTTCCCCCTTCTGGAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATCATGCAGTTAGCACAAAAATTCTATTTTCCCCCTTCTGGAT  345

seq1  CTCTTTCACAGTTCTGCACTAAAGAAAGTATTTAACCTTTCCAAACCTCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACAGTTCTGCACTAAAGAAAGTATTTAACCTTTCCAAACCTCA  395

seq1  CCTTT-AAAAAATTATCTATCAACTGAATATTTGTGTTCACGTCACAAAG  438
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAAAATTATCTATCAACTGAATATTTGTGTTCACGTCACAAAG  445

seq1  TTCATCTTCATAACTCGCCTTATCTTCTATCTTTATAATGAAACTTGTCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTCATAACTCGCCTTATCTTCTATCTTTATAATGAAACTTGTCA  495

seq1  GGCAAAGTTGGACCAATGTTTCTTGAAGGGAGGCTGCACATCAACCCTGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTGGACCAATGTTTCTTGAAGGGAGGCTGCACATCAACCCTGC  545

seq1  TACTCTAAATCCCTTGGCAAGAAGGCATTTTGAAAGTAAGCAGCTAAGCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAATCCCTTGGCAAGAAGGCATTTTGAAAGTAAGCAGCTAAGCT  595

seq1  TTAACCCTGCAATCGAAGCAGATAATGTAGCCATAGTCTGTATTTTATAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTGCAATCGAAGCAGATAATGTAGCCATAGTCTGTATTTTATAT  645

seq1  ACCTGGTGGAGTGGAAAATTGAGTCTGTTTGAAGTATTCAGTTCCCATTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGGAGTGGAAAATTGAGTCTGTTTGAAGTATTCAGTTCCCATTT  695

seq1  CAGTGTCTAAAGGAAGCTGGCAGAATCAAGCCTTATTGACTGGACTCTTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTAAAGGAAGCTGGCAGAATCAAGCCTTATTGACTGGACTCTTA  745

seq1  TTTAGCCTGAATTTTATTTCTTAGGTCAATGCAAATGGAAAAGAGTTTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTGAATTTTATTTCTTAGGTCAATGCAAATGGAAAAGAGTTTGT  795

seq1  AAAACTCTTGTTAGCTATGCAGGTGAACAGCATCCCAGTATTAATAAAAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTGTTAGCTATGCAGGTGAACAGCATCCCAGTATTAATAAAAT  845

seq1  TAAGATGGGTGGTGAACCAGACTCAACATTTGTATAAGAATCTTTTTCAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGGTGGTGAACCAGACTCAACATTTGTATAAGAATCTTTTTCAT  895

seq1  TGTATTACTCTATATGTTATTAGACTGACAAATTTGACTTGAAGTAATAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACTCTATATGTTATTAGACTGACAAATTTGACTTGAAGTAATAG  945

seq1  TCATAAAAAGTAGAAAACAAAAAATTTCAAAATTTTATCAAACAGGCAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAAGTAGAAAACAAAAAATTTCAAAATTTTATCAAACAGGCAAA  995

seq1  CCCTAACACCCCCCAAAAGAGAAAAAGCTACACTAATTAACAATAAAGCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACACCCCCCAAAAGAGAAAAAGCTACACTAATTAACAATAAAGCC  1045

seq1  TGTTTCCGGCTTGCTTCAGTTTTTTTAAGGATTCCATATTTTCTTCAGGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCGGCTTGCTTCAGTTTTTTTAAGGATTCCATATTTTCTTCAGGC  1095

seq1  ATCTTATGATGTCTGATGTCATGCTATTATTCTCTTCAACTCATTTCCCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGATGTCTGATGTCATGCTATTATTCTCTTCAACTCATTTCCCT  1145

seq1  TATCCTTCTGTATTCCTTATCTTGGTGAATTC  1170
      ||||||||||||||||||||||||||||||||
seq2  TATCCTTCTGTATTCCTTATCTTGGTGAATTC  1177

seq1: chr5_48751351_48752264
seq2: B6Ng01-339K04.g_66_971

seq1  GAATTCTATTAAGAAACTTGGTCCTTTGCCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAAGAAACTTGGTCCTTTGCCTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCACGTTTGTATACCACAGTACAA  100
      ||||||||||||||||||||||||||||  || ||  |      ||    
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTC-TGTGTGGGTGTGTGTGTGTGT  99

seq1  AACTCAGAAGACCACTCTGGGTGGGAATTATTTCTCTGCATACATTATGT  150
        ||| |||||||||| |||||||||| ||||||||||  ||||||||||
seq2  GTCTCTGAAGACCACTGTGGGTGGGAAGTATTTCTCTGTGTACATTATGT  149

seq1  ATGTCCTGGGGATTGGCTGAAGGTTCTCAGGCTCTTTTACCTACAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGGGGATTGGCTGAAGGTTCTCAGGCTCTTTTACCTACAGAGTG  199

seq1  ATCTTGTTCGAGGCTGCAAAAAGGAACTGGAAGATGCATTCAGGGTTAAG  250
      ||  ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGTGTTCGAGGCTGCAAAAAGGAACTGGAAGATGCATTCTGGGTTAAG  249

seq1  GATTTTGAAATTGGAAACATTCTAGACTATGGGGGCAGTCTACTATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAAATTGGAAACATTCTAGACTATGGGGGCAGTCTACTATCCTT  299

seq1  GGATATAACTAAGTCCTACCAACTTTCAATGTGAGAAGTGTGATCTTTAC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATATAACTAAGTCCTACCAACTTTCGATGTGAGAAGTGTGATCTTTAC  349

seq1  CATAGTAATATTGACAATGAGTAATATTGGATTAGTCAGAGATAATTAGT  400
      |||||||||||||||||||||| |||||||||||||| |||||  ||  |
seq2  CATAGTAATATTGACAATGAGTTATATTGGATTAGTCTGAGATGTTTTCT  399

seq1  GGATCCCCTGCTCCCTTCCTAATAGCTCGTCTGAACTTGTGGTCACCGAG  450
      |||||||||||||||||||| |  || || |||||||||| | | |||||
seq2  GGATCCCCTGCTCCCTTCCTGAGCGCACGGCTGAACTTGTCGCCCCCGAG  449

seq1  CTTTAACTACTGTAGTTACTCCAGGTTTTGGCTCTTACCTTAATACCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTACTGTAGTTACTCCAGGTTTTGGCTCTTACCTTAATACCTCC  499

seq1  TCCTTATTTGATTAGGTTCTGAAATGTAGAGTTGCTCATTCTTTGGAGAG  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTTATTTCATTAGGTTCTGAAATGTAGAGTTGCTCATTCTTTGGAGAA  549

seq1  CATGGGGCTAGCTGCCATGATTAAGGCAGAAGCTCGTCTGATTTCTTCCT  600
      |||||||||||||||||||||||||||  || ||||||||||||||||||
seq2  CATGGGGCTAGCTGCCATGATTAAGGCGAAATCTCGTCTGATTTCTTCCT  599

seq1  CTTGTGTGTGCTGCCACCATGATCTGATTCCTCAAAACATGACGTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGTGTGTGCTGCCACCATGATCTGATTCCTCAAAACATGACGTAACTT  649

seq1  CAGGCATCCTTTTCAGCGCAGCCAACACGTGAGCAGCATCACAAAAGGAG  700
      |||||||||||||| ||||||||| | ||||||| |||||||| ||||||
seq2  CAGGCATCCTTTTCCGCGCAGCCATCTCGTGAGCTGCATCACATAAGGAG  699

seq1  AAAACAGAATA-TTTTTTTTCTTTATCAGTTATGCAGGCTTAGGTTACAT  749
      | |||  |||| ||||||||||||| ||| |||||| || |||||||| |
seq2  ATAAC-TAATATTTTTTTTTCTTTA-CAG-TATGCATGC-TAGGTTACTT  745

seq1  ACCTTTTTTATAGGGGAAAACCACTAGACAAATATT-TGTAACTAATG-T  797
        | |  | | | |||| | |  | |||| |||||| |||||  |||| |
seq2  --CCTGGTGACACGGGACAGCAGCGAGAC-AATATTGTGTAATCAATGAT  792

seq1  CATTACATGAATCATTAGAAGCAAAGTAAGAGTTAAATAGTTTTTACAGT  847
      ||||||||| |||| | | |||| ||||||| |||||||| |||||||||
seq2  CATTACATGGATCA-TCGTAGCAGAGTAAGACTTAAATAG-TTTTACAGT  840

seq1  TTGGCAAAGGCCA-TCCACCAGCTTATATTGAGTAAGAGGAGAGGGGCCT  896
      ||||  ||||| | || |||||||||| | || |||||||||||||||||
seq2  TTGG-TAAGGCTATTCTACCAGCTTATGTGGA-TAAGAGGAGAGGGGCCT  888

seq1  CATGGTGTCAATCATGCC  914
      || |||||||||||||||
seq2  CAAGGTGTCAATCATGCC  906