BAC Information

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BAC

Clone NameB6Ng01-339M03
Chromosome5 (Build37)X (Build37)
Map Location 115,807,500 - 115,808,20020,300,430 - 20,301,439
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMyo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Downstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339M03.bB6Ng01-339M03.g
ACCGA123662GA123663
length3911,016
definitionB6Ng01-339M03.b B6Ng01-339M03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,807,500 - 115,808,200)(20,300,430 - 20,301,439)
sequence
actttgtagaccaggctgtcctcgaactcagaaatccgcctgcctctgcc
tgctgagtgctgggattaaaggcgtgcgccaccatgcccggcttagaaaa
ctgttttgatgctggaatcctgaggaataaaaccctggctctcagaaatt
atagacaaatccctctatcactaaagctgtgtgtctccaaccatagtgac
aactctttttttttttttttttttaaagatttactgttgggcggtggtgg
ctcacgtctttaatcctagcacttgggaggcagaggcaggtggatttctg
agtttgaggccagcctggtctacaaagtgagttccgggacacccctcagg
gctttatggagaaaccctgtctcgaaaaacaaacaaacaaa
gaattcccaaaaggactccatcggatgtataattcttgagaattatattt
tcttaaaaataatgtaatttttttcagatattgcttgttttaagatttgt
taattaggtccaaaacaagtgtttagtttggtactgaggtgagaattttc
tgagctctttcagtggtaattgtaattatgaatgtgtcctgtttgactgg
tgaggtcagtactgtgcaagcacggagctgctacctagatgcctgccacg
tgagacaggtagagcgcttcacccctgtagtactcagaaggctaaggcag
gaaccttatagtctcaaattcaagatcactgtggctgagaaagtgagttt
tagtaaagccagggtatatcgatagaccctgtctcaggactggagaaata
gttcagcgtttaagagaaccttccaggggatcagaattcaattcactgaa
cccatccgtgtcaggcagctcacaatcacctgtgactccaggtccaggga
aatctcagtgcctctggcatctgcatgtacacacacacacacacacacac
acacacagagttttaaaaaatagatccaggagttgtggtgcatgccttta
actcagcacttaggaggcagatgcaggcagatctatgtgagtttgaggcc
atcctggtctacaaagtgagtttcttactttgctgggggttgcaggggct
tttccaagacagggtttctctgtgtagccctggctgttctggaactcact
ctgtagaccaagctggcctcgaactcagaaatccacctgcctctgcttct
caagtactgggattaaaagcgtgcgccacccactgcccagctcattttta
gttttttgagacagaaacttatgtagttctggctgacctgatactcatta
tgtagtccatactagtcttgatttcctggcagtcctcctaatttgatctc
ctaaggctggaatacaagggtctccaatcgctatgccagggttaaactgc
ctttaaacttcaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115807500_115808200
seq2: B6Ng01-339M03.b_54_440 (reverse)

seq1  TTTGTTTTGTTTTGTTTTTCGAGGCAGGGTTTCTCTGTATAGCCCT---G  47
      |||||||   ||||||||||||| |||||||||||  || ||||||   |
seq2  TTTGTTT--GTTTGTTTTTCGAGACAGGGTTTCTCCATAAAGCCCTGAGG  48

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  97
      | ||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GGTGTCCCGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAAT  98

seq1  CCGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACCAT  147
      || |||||||||||||||  |||||| ||||||||| |||| ||||||| 
seq2  CCACCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGACGTGAGCCACCA-  147

seq1  GCCTGGCTACAGCAGTTATTTTTAATTTTCTTTGTCTTGTTTGTATGTTT  197
       ||   | |||| |  | |||  ||                 || |||  
seq2  -CCGCCCAACAGTAAATCTTTAAAAAAAAAAAAAAAAAAAGAGT-TGTCA  195

seq1  GTTTGGTTGGTTGGTTCGTTTTTGAGACAGAGCCTCACTGTGTAGCTCTG  247
       | ||||||              ||||||      |||     |||| | 
seq2  CTATGGTTG--------------GAGACA------CAC-----AGCTTTA  220

seq1  GCTATCCTGGAACTTGATATGTAGACCAGGCTGAGATGCAATCCCTCTTG  297
      |             |||||             |||               
seq2  G-------------TGATA-------------GAG---------------  229

seq1  CTTCCCCAGTGCTAGGATTAGATGTTGTGCCACAGGCTGGCTTCTGACTG  347
                    ||||      |||| | |     |   ||||||  |
seq2  --------------GGAT------TTGT-CTA-----TAATTTCTGA--G  251

seq1  AGCTAGTATTGATCATCCGCAGTTTCATTCAGTGAAAAAACGAGGCAGGT  397
      ||| ||               |||| ||||                    
seq2  AGCCAG--------------GGTTTTATTC--------------------  267

seq1  CCGGGATGTGGCTCAGCAGGTTGAGTGTTTGTTGGTCATGTAGGAAGCAC  447
                 |||||                                  
seq2  -----------CTCAG----------------------------------  272

seq1  TGATTTTGGCCCCCAAGTCCCTACTATACCTGGGCATCAAGGTGAACAGC  497
       ||||       |||                  |||||||    ||||| 
seq2  -GATT-------CCA------------------GCATCAA----AACAG-  291

seq1  AGCAACCCCAGCACTCCAGGAGTTAGGATGGTCCGAAAGGCAAGGTCATC  547
                                                        
seq2  --------------------------------------------------  291

seq1  CCGTGCTACACGGCTAGTCTCATCTACATGAGATCTTGTCTCAGAAAGAA  597
                                         || ||| |       
seq2  -----------------------------------TTTTCTAA-------  299

seq1  AACAAAATCGAATCTGCTGGGCAGTGGTGACACATGCCTTTATTCCCAGC  647
                     || ||||| ||||| | || ||||||| |||||||
seq2  ---------------GCCGGGCA-TGGTGGCGCACGCCTTTAATCCCAGC  333

seq1  ACTCCGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC  697
      |||| | |||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTC  383

seq1  TACA  701
      ||||
seq2  TACA  387

seq1: chrX_20300430_20301439
seq2: B6Ng01-339M03.g_65_1079

seq1  GAATTCCCAAAAGGACTCCATCGGATGTATAATTCTTGAGAATTATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAAGGACTCCATCGGATGTATAATTCTTGAGAATTATATTT  50

seq1  TCTTAAAAATAATGTAATTTTTTTCAGATATTGCTTGTTTTAAGATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAATAATGTAATTTTTTTCAGATATTGCTTGTTTTAAGATTTGT  100

seq1  TAATTAGGTCCAAAACAAGTGTTTAGTTTGGTACTGAGGTGAGAATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGTCCAAAACAAGTGTTTAGTTTGGTACTGAGGTGAGAATTTTC  150

seq1  TGAGCTCTTTCAGTGGTAATTGTAATTATGAATGTGTCCTGTTTGACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTTCAGTGGTAATTGTAATTATGAATGTGTCCTGTTTGACTGG  200

seq1  TGAGGTCAGTACTGTGCAAGCACGGAGCTGCTACCTAGATGCCTGCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGTACTGTGCAAGCACGGAGCTGCTACCTAGATGCCTGCCACG  250

seq1  TGAGACAGGTAGAGCGCTTCACCCCTGTAGTACTCAGAAGGCTAAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGTAGAGCGCTTCACCCCTGTAGTACTCAGAAGGCTAAGGCAG  300

seq1  GAACCTTATAGTCTCAAATTCAAGATCACTGTGGCTGAGAAAGTGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTATAGTCTCAAATTCAAGATCACTGTGGCTGAGAAAGTGAGTTT  350

seq1  TAGTAAAGCCAGGGTATATCGATAGACCCTGTCTCAGGACTGGAGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGCCAGGGTATATCGATAGACCCTGTCTCAGGACTGGAGAAATA  400

seq1  GTTCAGCGTTTAAGAGAACCTTCCAGGGGATCAGAATTCAATTCACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCGTTTAAGAGAACCTTCCAGGGGATCAGAATTCAATTCACTGAA  450

seq1  CCCATCCGTGTCAGGCAGCTCACAATCACCTGTGACTCCAGGTCCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCGTGTCAGGCAGCTCACAATCACCTGTGACTCCAGGTCCAGGGA  500

seq1  AATCTCAGTGCCTCTGGCATCTGCATGTACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGTGCCTCTGGCATCTGCATGTACACACACACACACACACACAC  550

seq1  ACACACAGAGTTTTAAAAAATAGATCCAGGAGTTGTGGTGCATGCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGTTTTAAAAAATAGATCCAGGAGTTGTGGTGCATGCCTTTA  600

seq1  ACTCAGCACTTAGGAGGCAGATGCAGGCAGATCTATGTGAGTTTGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCACTTAGGAGGCAGATGCAGGCAGATCTATGTGAGTTTGAGGCC  650

seq1  ATCCTGGTCTACAAAGTGAGTTTCTTACTTTGCTGGGGGTTGCAGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTCTACAAAGTGAGTTTCTTACTTTGCTGGGGGTTGCAGGGGCT  700

seq1  TTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACT  750

seq1  CTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCT  800

seq1  CAAGTACTGGGATTAAAAGCGTGCGCCA-CCACTGCCCAGCTCATTTTTA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAGTACTGGGATTAAAAGCGTGCGCCACCCACTGCCCAGCTCATTTTTA  850

seq1  GTTTTTTGAGACAGAAACTTTATGTAGTTCTGGCTGACCTGATACTCATT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTTTTTGAGACAGAAAC-TTATGTAGTTCTGGCTGACCTGATACTCATT  899

seq1  ATGTAGTCCATACTAGTCTTGATTTCCTGGCAGTCCTCCTAACTTGATCT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTAGTCCATACTAGTCTTGATTTCCTGGCAGTCCTCCTAATTTGATCT  949

seq1  CCTAAGGCTGGGAATACA--GGTCT-CAATCGCTATGCCA-GGTTAAACT  995
      ||||||||| ||||||||  ||||| |||||||||||||| |||||||||
seq2  CCTAAGGCT-GGAATACAAGGGTCTCCAATCGCTATGCCAGGGTTAAACT  998

seq1  GC--TTTAACTTCAAGA  1010
      ||  || ||||||||||
seq2  GCCTTTAAACTTCAAGA  1015