BAC Information

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BAC

Clone NameB6Ng01-339N09
Chromosome5 (Build37)
Map Location 30,943,617 - 31,076,996
singlet/doubletdoublet
Overlap gene4930471M23Rik, Cenpa, Dpysl5
Upstream geneUbe3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3
Downstream geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N09.bB6Ng01-339N09.g
ACCGA123722GA123723
length6871,090
definitionB6Ng01-339N09.b B6Ng01-339N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,943,617 - 30,944,303)(31,075,527 - 31,076,996)
sequence
gaattcagtaccctcttctggactctgtggggactgtactcatgagcata
ggcccacacagagatacatatatacacacaattaaaaatgaaacaaatct
taaaaaaaataaagtcaaccaaaattggcatagcgtgttcatttatcatt
atccaatcaatccagatgcccaagtgtggtggcacaagcctttaatccca
gcactttgtaggcagaggcaggcagatctctgtgagttcaaggctagccc
aatctgcttggtaagttccaggagagccaaggctgtgtagaaagaccatg
tctcaagattaactaattaactcgcccaggattctgataacatagagcca
acacagtgcacctagaaccactcaggtggctagataagatgccacagacc
aggtacagagctggttctaagtatagggctagcttgagaggcagagctcg
tgtggaggaattgtgtttcaaacgggctgagcagaagtcccaggacagag
cgttgggttaccacattggtgatgagttgataggtgtgttggctggtttg
gtgacaggctggtgggtacactgggtggtttggtgacaggctggtgggta
cactgggtggtttggtgacaggctggtgggtacactgggtggtttggtga
caggctggtgggtatactgggtggtttgatgatgggc
gaattccagagaccaacagtggtctgggtataggttaggggactcgaggc
tgacacagcttctgagcctggtggggaatcagtataggctatcagaagca
ccaagcagcatcctctggagcctagccataggaactgaagagttctggaa
agcatgctgagcagcggtcttgaatttcccatcttactggctgttaccca
ggagcagccacgagccccctctgcagctacacatgcagccacacacatgt
gcatctgtacctgtagggccacagctgtggagctcagaagagcacatatt
actattactaccactgcgactctgggcctccaaaccggagttcataggct
cagcagatcctcctcccaccagctgccggctctgtgaacacgaggacacc
acagatgtgacagatctttttattgtcaccccacaggaaagccttgcaca
ggtcagcagcagagcaatgcactgtcctgtccctgatgctttaaggagga
cgtgtttaaggaggggtggctgtgggcctgccacacgtcacgactactta
gacaccaccttttacttaggtgagctgaaggcagtagcacacagcacagt
gctctcggaggctgttttagagcttctatggctgggatgaaacacatgag
caaaggtggctggaggaggaaagggttccacatcagtccctcctcaaaca
aaggaagtaggggcaggaatcccacgcaggccactctggctcttcatggc
ttgctcaacctgcttctagtacacccccaagactacctgcccggaggaag
caccacccacagtggcatgggcccccccacatccaccagtaatcaagaaa
atgcccacaggcttgcccactgggccagtctggcaggacatttcccaaat
gagtctagcttatgtcaagtaaaaaaagacactagcccagcacaggggct
aagtcgatgtaacagggcatcgctgccgtgactgaagacagattcagtgt
cataagaaaacttgagcttatggttaatcacaacagcaacacagagagaa
tggcaagtacgtcatgacgcctgtttggaactgactgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30943617_30944303
seq2: B6Ng01-339N09.b_51_737

seq1  GAATTCAGTACCCTCTTCTGGACTCTGTGGGGACTGTACTCATGAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACCCTCTTCTGGACTCTGTGGGGACTGTACTCATGAGCATA  50

seq1  GGCCCACACAGAGATACATATATACACACAATTAAAAATGAAACAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACACAGAGATACATATATACACACAATTAAAAATGAAACAAATCT  100

seq1  TAAAAAAAATAAAGTCAACCAAAATTGGCATAGCGTGTTCATTTATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATAAAGTCAACCAAAATTGGCATAGCGTGTTCATTTATCATT  150

seq1  ATCCAATCAATCCAGATGCCCAAGTGTGGTGGCACAAGCCTTTAATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCAATCCAGATGCCCAAGTGTGGTGGCACAAGCCTTTAATCCCA  200

seq1  GCACTTTGTAGGCAGAGGCAGGCAGATCTCTGTGAGTTCAAGGCTAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGTAGGCAGAGGCAGGCAGATCTCTGTGAGTTCAAGGCTAGCCC  250

seq1  AATCTGCTTGGTAAGTTCCAGGAGAGCCAAGGCTGTGTAGAAAGACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTTGGTAAGTTCCAGGAGAGCCAAGGCTGTGTAGAAAGACCATG  300

seq1  TCTCAAGATTAACTAATTAACTCGCCCAGGATTCTGATAACATAGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATTAACTAATTAACTCGCCCAGGATTCTGATAACATAGAGCCA  350

seq1  ACACAGTGCACCTAGAACCACTCAGGTGGCTAGATAAGATGCCACAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGCACCTAGAACCACTCAGGTGGCTAGATAAGATGCCACAGACC  400

seq1  AGGTACAGAGCTGGTTCTAAGTATAGGGCTAGCTTGAGAGGCAGAGCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGAGCTGGTTCTAAGTATAGGGCTAGCTTGAGAGGCAGAGCTCG  450

seq1  TGTGGAGGAATTGTGTTTCAAACGGGCTGAGCAGAAGTCCCAGGACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGAATTGTGTTTCAAACGGGCTGAGCAGAAGTCCCAGGACAGAG  500

seq1  CGTTGGGTTACCACATTGGTGATGAGTTGATAGGTGTGTTGGCTGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGTTACCACATTGGTGATGAGTTGATAGGTGTGTTGGCTGGTTTG  550

seq1  GTGACAGGCTGGTGGGTACACTGGGTGGTTTGGTGACAGGCTGGTGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGCTGGTGGGTACACTGGGTGGTTTGGTGACAGGCTGGTGGGTA  600

seq1  CACTGGGTGGTTTGGTGACAGGCTGGTGGGTACACTGGGTGGTTTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGTTTGGTGACAGGCTGGTGGGTACACTGGGTGGTTTGGTGA  650

seq1  CAGGCTGGTGGGTATACTGGGTGGTTTGATGATGGGC  687
      |||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTGGGTATACTGGGTGGTTTGATGATGGGC  687

seq1: chr5_31075527_31076996
seq2: B6Ng01-339N09.g_67_1156 (reverse)

seq1  GAGCAGTCAGTGCTCTTAACCACTGAGACATCTCTCCAGCCACACAAAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTATTTTAATAAAAACAAAAAGTTTAAAATATCTGAACCAAAAAAGTAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTAACAATATCTGATAAGTGTGTGCGGCAGGTCCCATGAACTTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTAAATCTTCTGTGCCTTTACTCTGCATCTGAAATCTATAAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAACATCTTTTACACATGGAAATGTAGCTAACTAAATTTAGTTTTAGC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTCCAGGCTTATTTGTGTAGTGCATAGTATAAAAATGACATTGCTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCGTATGTTGTAAAATTAGTATACTAATTAATTAATGTAATAAATTTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAATAAGAAGAAAACAACTCGGGAGCAGTCACTTCAAAACAGCCGTC  400
                               ||||||||| ||| |||||| ||||
seq2  -------------------------GAGCAGTCAGTTCCAAACAGGCGTC  25

seq1  AATGACGTACTTGGCATTCTTCCTCCTGTGTTGCTTGTGTGTGATTTAAC  450
       |||||||||||| ||||||  || ||||||||| ||| ||||||| | |
seq2  -ATGACGTACTTGCCATTCT--CT-CTGTGTTGC-TGT-TGTGATTAACC  69

seq1  AT-AGCTCCAAGTGTCTTATGAACACTGAATCTGTTCTTCAGTCACGGCA  499
      || ||||| |  | ||||||| |||||||||||| |||||||||||||||
seq2  ATAAGCTCAAGTTTTCTTATG-ACACTGAATCTG-TCTTCAGTCACGGCA  117

seq1  GCGATGCCCTGTTACCTTCGACTTAGCCCCTGTGCT-GGCTAGTGTC-TT  547
      |||||||||||||| | ||||||||||||||||||| |||||||||| ||
seq2  GCGATGCCCTGTTA-CATCGACTTAGCCCCTGTGCTGGGCTAGTGTCTTT  166

seq1  TTTTACTTGACATAAGCTAGACTCATTTGGGAAATGTCCTGCCAGACTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGACATAAGCTAGACTCATTTGGGAAATGTCCTGCCAGACTGG  216

seq1  -CCAGTGGGCAAGCCTGTGGGGCATTTTCTTGATTACTGGTGGATGT-GG  645
       ||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  CCCAGTGGGCAAGCCTGT-GGGCATTTTCTTGATTACTGGTGGATGTGGG  265

seq1  GGGGCCCATGCCACTGTGGGTGGTGCTTCCTCCGGGCAGGTAGTCTTGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCATGCCACTGTGGGTGGTGCTTCCTCCGGGCAGGTAGTCTTGGG  315

seq1  GGTGTACTAGAAGCAGGTTGAGCAAGCCATGAAGAGCCAGAGTGGCCTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACTAGAAGCAGGTTGAGCAAGCCATGAAGAGCCAGAGTGGCCTGC  365

seq1  GTGGGATTCCTGCCCCTACTTCCTTTGTTTGAGGAGGGACTGATGTGGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTCCTGCCCCTACTTCCTTTGTTTGAGGAGGGACTGATGTGGAA  415

seq1  CCCTTTCCTCCTCCAGCCACCTTTGCTCATGTGTTTCATCCCAGCCATAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTCCTCCAGCCACCTTTGCTCATGTGTTTCATCCCAGCCATAG  465

seq1  AAGCTCTAAAACAGCCTCCGAGAGCACTGTGCTGTGTGCTACTGCCTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAAAACAGCCTCCGAGAGCACTGTGCTGTGTGCTACTGCCTTCA  515

seq1  GCTCACCTAAGTAAAAGGTGGTGTCTAAGTAGTCGTGACGTGTGGCAGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTAAGTAAAAGGTGGTGTCTAAGTAGTCGTGACGTGTGGCAGGC  565

seq1  CCACAGCCACCCCTCCTTAAACACGTCCTCCTTAAAGCATCAGGGACAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCACCCCTCCTTAAACACGTCCTCCTTAAAGCATCAGGGACAGG  615

seq1  ACAGTGCATTGCTCTGCTGCTGACCTGTGCAAGGCTTTCCTGTGGGGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCATTGCTCTGCTGCTGACCTGTGCAAGGCTTTCCTGTGGGGTGA  665

seq1  CAATAAAAAGATCTGTCACATCTGTGGTGTCCTCGTGTTCACAGAGCCGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAGATCTGTCACATCTGTGGTGTCCTCGTGTTCACAGAGCCGG  715

seq1  CAGCTGGTGGGAGGAGGATCTGCTGAGCCTATGAACTCCGGTTTGGAGGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGGGAGGAGGATCTGCTGAGCCTATGAACTCCGGTTTGGAGGC  765

seq1  CCAGAGTCGCAGTGGTAGTAATAGTAATATGTGCTCTTCTGAGCTCCACA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCGCAGTGGTAGTAATAGTAATATGTGCTCTTCTGAGCTCCACA  815

seq1  GCTGTGGCCCTACAGGTACAGATGCACATGTGTGTGGCTGCATGTGTAGC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCCCTACAGGTACAGATGCACATGTGTGTGGCTGCATGTGTAGC  865

seq1  TGCAGAGGGGGCTCGTGGCTGCTCCTGGGTAACAGCCAGTAAGATGGGAA  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGGGGCTCGTGGCTGCTCCTGGGTAACAGCCAGTAAGATGGGAA  915

seq1  ATTCAAGACCGCTGCTCAGCATGCTTTCCAGAACTCTTCAGTTCCTATGG  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGACCGCTGCTCAGCATGCTTTCCAGAACTCTTCAGTTCCTATGG  965

seq1  CTAGGCTCCAGAGGATGCTGCTTGGTGCTTCTGATAGCCTATACTGATTC  1395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCCAGAGGATGCTGCTTGGTGCTTCTGATAGCCTATACTGATTC  1015

seq1  CCCACCAGGCTCAGAAGCTGTGTCAGCCTCGAGTCCCCTAACCTATACCC  1445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGGCTCAGAAGCTGTGTCAGCCTCGAGTCCCCTAACCTATACCC  1065

seq1  AGACCACTGTTGGTCTCTGGAATTC  1470
      |||||||||||||||||||||||||
seq2  AGACCACTGTTGGTCTCTGGAATTC  1090