BAC Information

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BAC

Clone NameB6Ng01-339O05
Chromosome5 (Build37)
Map Location 84,014,799 - 84,119,989
singlet/doubletdoublet
Overlap geneLOC100039608
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339O05.bB6Ng01-339O05.g
ACCGA123760GA123761
length9671,129
definitionB6Ng01-339O05.b B6Ng01-339O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,014,799 - 84,015,646)(84,118,856 - 84,119,989)
sequence
gaattcataattaagtggtcatggcccaagtgtgatctcattgatcatta
cctaaactctagtactacaaaatggttaaaagatttgctttcactgtcat
agcttgaaggaagaaatatggttcccaggagatggttacagctccaaaat
tcaacggaactatcacaggtgatcgtcctcatttcaaaggtatactattg
gctcatcattatttgtgggtctttttggtcctcattacaaccttattaat
caagtctttggtactaacatttcatggaacttcaagtttatgtcatttgg
tgacagggctatttctgaaacatgatggtgcaaaaaagtgacagtgaaat
actgttattagacgcgttctcacgaccggccaggaagaacaccacagacc
agaatcttctgcggcaaagctttattcttacatcttcaggaacagagtgc
aagaagcaagagagcaagaagcaagagagagagaaaagcaagagagagag
aaaagcaagagagcgaaaaagcaagagagagagcgagagacaagagagag
agagaacgaaaccccgtccctcttaaggagcattctccttcgcctcggac
gtgtcactccctgattggctgcagcccatcggccgagttgacgtcacggg
gaaggcagagcacaagtagtcataagatacccttggcacatgcgcagatt
atttgtttaccacatagaacacaggatgtcagcgccatcttgtaacggcg
aatgtgggggcggctcccaacatctccccctttttcttttaataagagca
aataggccacccatattaatgagagtggagatagaggtcaaatccccagt
gtgtaggtaaaggagccatgtacaggattagctcttaggctcacaagctt
ttacccagagcaaccctgacctgctcccgtgtcgttttgcctgggggaag
ggaactaggacactgaa

gaattcatctcatttcctaaattctcttttataatagcactatcatattg
aaggctgacctttcaggattgtgatgcttgagaagtaagactaaagaagg
tagcaaagggagtgagtattatggaaatgttacaagctattagtatatat
atatatatctcacaatttttaatatgtaaaaatacataaaattatataat
gatcatgtgacagtggtttaaagacatcagaaagaatgtcaaagacctca
aatgccctttcttatttttagcaccagatttgaaaccatgattatatttt
gaagaaagaaccatgaagttttgaaaataatttagaggaattatttctgc
aggactttgatgaggttgaaaagaaggctattctgtaaaacatctctagc
tggcaaagtagtccccaaattaagcatctgtgttagggcagagatgaaac
tcagggcaaatatattgcatgtatagaaattctaaaattctgtttatgta
gcagagagttttataatgatggattttagaatcagtcttctaaaccaaat
gtactttaagatttcatagacctgagtttgagaagccgaacagttcaagc
actcagattcagcctgtcattcaagcaaatgataaatacacttttgtctc
attgaacagatatcagttgaattcaatataagaattttgtgttattgaag
ccattagcctccttagaattaaaaatgaaaagtatgctaacataaagata
ccttactgacttcttaagcaattataggcacaaaacagttcaagaatggt
atatattaaaattattgtaggcttgaaattgtagacgctagctttccata
gtggaattattgcagccagtgaggtttatctgaggcgtggttattgctaa
ttgaaattatagatgctgtccaattgtttatagtatttttacccacacct
ttttcaaaaggacttccagaaaaatattagtcagtctgtttattttctgt
tcctctttatatagaatttacaaggagtaccataatcataatgccccttt
ccattgtgctaacattcatagtaaaataaaatgattatatatatttgtgc
aacatgctcagaatgtaatgagctttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84014799_84015646
seq2: B6Ng01-339O05.b_49_896

seq1  GAATTCATAATTAAGTGGTCATGGCCCAAGTGTGATCTCATTGATCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTAAGTGGTCATGGCCCAAGTGTGATCTCATTGATCATTA  50

seq1  CCTAAACTCTAGTACTACAAAATGGTTAAAAGATTTGCTTTCACTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTCTAGTACTACAAAATGGTTAAAAGATTTGCTTTCACTGTCAT  100

seq1  AGCTTGAAGGAAGAAATATGGTTCCCAGGAGATGGTTACAGCTCCAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAGGAAGAAATATGGTTCCCAGGAGATGGTTACAGCTCCAAAAT  150

seq1  TCAACGGAACTATCACAGGTGATCGTCCTCATTTCAAAGGTATACTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGAACTATCACAGGTGATCGTCCTCATTTCAAAGGTATACTATTG  200

seq1  GCTCATCATTATTTGTGGGTCTTTTTGGTCCTCATTACAACCTTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCATTATTTGTGGGTCTTTTTGGTCCTCATTACAACCTTATTAAT  250

seq1  CAAGTCTTTGGTACTAACATTTCATGGAACTTCAAGTTTATGTCATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTTGGTACTAACATTTCATGGAACTTCAAGTTTATGTCATTTGG  300

seq1  TGACAGGGCTATTTCTGAAACATGATGGTGCAAAAAAGTGACAGTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGCTATTTCTGAAACATGATGGTGCAAAAAAGTGACAGTGAAAT  350

seq1  ACTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACC  400

seq1  AGAATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAACAGAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAACAGAGTGC  450

seq1  AAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAAGCAAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAAGCAAGAGAGAGAG  500

seq1  AAAAGCAAGAGAGCGAAAAAGCAAGAGAGAGAGCGAGAGACAAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGAGAGCGAAAAAGCAAGAGAGAGAGCGAGAGACAAGAGAGAG  550

seq1  AGAGAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTTCGCCTCGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTTCGCCTCGGAC  600

seq1  GTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGG  650

seq1  GAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCACATGCGCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCACATGCGCAGATT  700

seq1  ATTTGTTTACCACATAGAACACAGGATGTCAGCGCCATCTTGTAACGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTACCACATAGAACACAGGATGTCAGCGCCATCTTGTAACGGCG  750

seq1  AATGTGGGGGCGGCTCCCAACATCTCCCCCTTTTTCTTTTAATAAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGGGCGGCTCCCAACATCTCCCCCTTTTTCTTTTAATAAGAGCA  800

seq1  AATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCA  848


seq1: chr5_84118856_84119989
seq2: B6Ng01-339O05.g_65_1193 (reverse)

seq1  CAGAAAGCTTCATAACTATCTTGAGCACTGTTGCAC-AATATATATCAAT  49
      |||||||| |||| || ||  |||||| |||||||| ||||||||| |||
seq2  CAGAAAGC-TCATTAC-ATTCTGAGCA-TGTTGCACAAATATATAT-AAT  46

seq1  --TTTTATTTTAACTTATGAATGTTTAGCACAATTG-AAGGGGCATTTAT  96
        ||||||||||   |||||||| |||||||||| | |||||||| ||||
seq2  CATTTTATTTTA--CTATGAATG-TTAGCACAATGGAAAGGGGCA-TTAT  92

seq1  GATTATGGTACTTCCCTTGTAAATTCTATATAAAGGAGGAACAG-AAATA  145
      ||||||||||||  |||||||||||||||||||| ||||||||| |||||
seq2  GATTATGGTACT--CCTTGTAAATTCTATATAAA-GAGGAACAGAAAATA  139

seq1  AACAGACTGACTAATA-TTTTCTGGAAGTCCTTTTGAAAAAGGTGTGGGT  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACAGACTGACTAATATTTTTCTGGAAGTCCTTTTGAAAAAGGTGTGGGT  189

seq1  -AAAATACTATAAAACAATTGGACAGCATCTATAATTTCAATTAGCAATA  243
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTAT-AAACAATTGGACAGCATCTATAATTTCAATTAGCAATA  238

seq1  ACCACGCCTCAGATAAACCTCACTGGCTGCAATAATTCCACTATGGAAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCTCAGATAAACCTCACTGGCTGCAATAATTCCACTATGGAAAG  288

seq1  CTAGCGTCTACAATTTCAAGCCTACAATAATTTTAATATATACCATTCTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTCTACAATTTCAAGCCTACAATAATTTTAATATATACCATTCTT  338

seq1  GAACTGTTTTGTGCCTATAATTGCTTAAGAAGTCAGTAAGGTATCTTTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTTGTGCCTATAATTGCTTAAGAAGTCAGTAAGGTATCTTTAT  388

seq1  GTTAGCATACTTTTCATTTTTAATTCTAAGGAGGCTAATGGCTTCAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATACTTTTCATTTTTAATTCTAAGGAGGCTAATGGCTTCAATAA  438

seq1  CACAAAATTCTTATATTGAATTCAACTGATATCTGTTCAATGAGACAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTCTTATATTGAATTCAACTGATATCTGTTCAATGAGACAAAA  488

seq1  GTGTATTTATCATTTGCTTGAATGACAGGCTGAATCTGAGTGCTTGAACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTATCATTTGCTTGAATGACAGGCTGAATCTGAGTGCTTGAACT  538

seq1  GTTCGGCTTCTCAAACTCAGGTCTATGAAATCTTAAAGTACATTTGGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGCTTCTCAAACTCAGGTCTATGAAATCTTAAAGTACATTTGGTTT  588

seq1  AGAAGACTGATTCTAAAATCCATCATTATAAAACTCTCTGCTACATAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGATTCTAAAATCCATCATTATAAAACTCTCTGCTACATAAAC  638

seq1  AGAATTTTAGAATTTCTATACATGCAATATATTTGCCCTGAGTTTCATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTAGAATTTCTATACATGCAATATATTTGCCCTGAGTTTCATCT  688

seq1  CTGCCCTAACACAGATGCTTAATTTGGGGACTACTTTGCCAGCTAGAGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAACACAGATGCTTAATTTGGGGACTACTTTGCCAGCTAGAGAT  738

seq1  GTTTTACAGAATAGCCTTCTTTTCAACCTCATCAAAGTCCTGCAGAAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAGAATAGCCTTCTTTTCAACCTCATCAAAGTCCTGCAGAAATA  788

seq1  ATTCCTCTAAATTATTTTCAAAACTTCATGGTTCTTTCTTCAAAATATAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTAAATTATTTTCAAAACTTCATGGTTCTTTCTTCAAAATATAA  838

seq1  TCATGGTTTCAAATCTGGTGCTAAAAATAAGAAAGGGCATTTGAGGTCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTTCAAATCTGGTGCTAAAAATAAGAAAGGGCATTTGAGGTCTT  888

seq1  TGACATTCTTTCTGATGTCTTTAAACCACTGTCACATGATCATTATATAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTTTCTGATGTCTTTAAACCACTGTCACATGATCATTATATAA  938

seq1  TTTTATGTATTTTTACATATTAAAAATTGTGAGATATATATATATATACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATTTTTACATATTAAAAATTGTGAGATATATATATATATACT  988

seq1  AATAGCTTGTAACATTTCCATAATACTCACTCCCTTTGCTACCTTCTTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTGTAACATTTCCATAATACTCACTCCCTTTGCTACCTTCTTTA  1038

seq1  GTCTTACTTCTCAAGCATCACAATCCTGAAAGGTCAGCCTTCAATATGAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACTTCTCAAGCATCACAATCCTGAAAGGTCAGCCTTCAATATGAT  1088

seq1  AGTGCTATTATAAAAGAGAATTTAGGAAATGAGATGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATTATAAAAGAGAATTTAGGAAATGAGATGAATTC  1129


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