BAC Information

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BAC

Clone NameB6Ng01-339O22
Chromosome5 (Build37)14 (Build37)
Map Location 32,149,841 - 32,150,075112,211,591 - 112,212,374
singlet/doubletsingletsinglet
Overlap geneBre
Upstream geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339O22.bB6Ng01-339O22.g
ACCGA123789GA123790
length9471,123
definitionB6Ng01-339O22.b B6Ng01-339O22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,149,841 - 32,150,075)(112,211,591 - 112,212,374)
sequence
gaattcctccacaaatcccctaggtcatctgtcaacaagtgccttgggtc
cttgattgcaggtgtcatgttctgtcaagtcactctaaagatggctccta
ctgtgctcaccttgcagcagatggtgagctggccttcagagagaagccaa
tgccgatgggagaggaggaggagatctcgaaggagctttttgaatcctct
ctgttggtattacagaaagcttacgatattagggccctttctccttggga
atttatgatccagaacttgaactttgactgaacggggctctctggacagc
tgagcaacaccaggtaaactgacagttaatctttgctttcttcatcaacc
ctgtttgggtgtaatctcaaacaccatgccacttctctaatgagaacact
gggcttgtaatgtttttccgaattccacccatgcaaaatgaaaagttgct
aatggtccactcattgcagaatttctgagcattgatctgtgtggagccac
agctattggcttccatgttccctgtcctttgtgctggaggtagtttcgaa
ggtttaagttgatttaatccaccaggtttgaagtctcaggcgttcttcag
tatatgctagaattctgaagtagagtctaatgccagagaagagatgggct
tgctagtaagatgagagcatgcaggcaaagacacaaagcgtccttcttca
tttgcttacataagcctccagcagaaggtgtggcccacttaatggtgtgt
catctagtctcaagatttggattaaaggtttttctttttttatttgatat
tttctttatttacattacaaactttgtcccctttcctcattccgcccccc
aaagccttcctaccccatctcccttccccctgctcaccaacctacccact
cccacttccctgtactagcattcccctatactaaggcatcatgccct
gaattccatagcctcagtaatagtgtcaggttttgtgatgttccccaccc
ccacccccttgatctggatcccactttgggactatcactggacctccctt
tcctcaggctcttctccagttttgtctctatttctttcagatgggaacaa
ttatgggttagagtattgactgtaggatggcaatcccatcccttacttga
tgacctgcctttctgctggaggttggttctacaagtttcctccccccact
gtaggacatttcatctaaggtccctccctttgagtcctgagagtctccca
cctcccaggtctctggtacattctggagggtccccacacctcctactgcc
caaggttgcctatttccattctttctgcttgccctcagggcttcagtcct
tttctctcttccaataccagaccatgttccccacttcccctccctgtccc
ttgtatacccaggttccccctgcccccttgtgattgctttttttctccct
tccaagtgggattgaggcatccacacttgggcctttcggcttgttgacct
ttgcgagctctgtggactgtatcttgggtattctgtacttttttttcttt
tgctaatatccacttattagtgagtacgtaccatgcacgtccttttgggt
gtgagttacatcactcaggatgatattttctagttccacccatttgcctg
caaaactcgggatatgacagaggacaacttacaatagttagtttctcctt
taagtttgtgagcgccaggtataactgaagctattaggctcagcagcaag
ttctttggaccacggagacaccttgctgcccccatcacgtttgtgtatgt
atttgcttgttgtttgtaggctgcaacaaattaagtgtctctcacgtagg
ttgtgttttaaaagtatctgtagcatttcttatattggatattgaaagag
aacaacacattccactaaagtaaatagaggaaaaatgaaatagcatgcat
aaaaatactgatgagttatcgatggagtatgatgaaaattgagggagtag
aacaacttatcaagtcagttatctggtgctaggtgccttgtgtttggaat
gaggctatccacgaaggtcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32149841_32150075
seq2: B6Ng01-339O22.b_476_963

seq1  --------------------------------------------------  0
                                                        
seq2  CCATGCAAAATGAAAAGTTGCTAATGGTCCACTCATTGCAGAATTTCTGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCATTGATCTGTGTGGAGCCACAGCTATTGGCTTCCATGTTCCCTGTCCT  100

seq1  --------------------------------------------------  0
                                                        
seq2  TTGTGCTGGAGGTAGTTTCGAAGGTTTAAGTTGATTTAATCCACCAGGTT  150

seq1  --------------------------------------------------  0
                                                        
seq2  TGAAGTCTCAGGCGTTCTTCAGTATATGCTAGAATTCTGAAGTAGAGTCT  200

seq1  -------------------CCATGC----AAAATGAAAACCT----ACGA  23
                          | |||    || |||| | | |     | |
seq2  AATGCCAGAGAAGAGATGGGCTTGCTAGTAAGATGAGAGCATGCAGGCAA  250

seq1  AG-CAGAAA----ACTGATTCATTTG--TAAGTATTGCTGCTGTGATAAC  66
      || || |||     ||  ||||||||  ||  ||   || | |  | || 
seq2  AGACACAAAGCGTCCTTCTTCATTTGCTTACATAAGCCTCCAG-CAGAAG  299

seq1  ACTTTTTCGCTTTAAAGTTATAT--TCTGGCC------TTTAAATTAA--  106
         |   |   |||| | | | |  ||| | |      |||  |||||  
seq2  GTGTGGCCCACTTAATGGTGTGTCATCTAGTCTCAAGATTTGGATTAAAG  349

seq1  --TTTTCTTTTTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCCAA  154
        ||||||||||||||||      | ||||||||| ||||||||| | ||
seq2  GTTTTTCTTTTTTTATTT------GATATTTTCTTTATTTACATTACAAA  393

seq1  ------------TGCT-AT------CCCAAAAG------TCCCCCAT---  176
                  | || ||      ||| ||||      | ||||||   
seq2  CTTTGTCCCCTTTCCTCATTCCGCCCCCCAAAGCCTTCCTACCCCATCTC  443

seq1  --GCCCCCCCACTCCCCTATCCACCCACTCCCACTTCTTGGCCCTGGCTT  224
          |||||  ||| || | | ||||||||||||||              
seq2  CCTTCCCCCTGCTCACCAACCTACCCACTCCCACTT--------------  479

seq1  TCCCCTGTACT  235
        |||||||||
seq2  --CCCTGTACT  488

seq1: chr14_112211591_112212374
seq2: B6Ng01-339O22.g_400_1187

seq1  ACACCTCCTACTGCCCAAGGTTGCCTATTTCCATTCTTTCTGCTTGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTACTGCCCAAGGTTGCCTATTTCCATTCTTTCTGCTTGCCCT  50

seq1  CAGGGCTTCAGTCCTTTTCTCTCTTCCAATACCAGACCATGTTCCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTCAGTCCTTTTCTCTCTTCCAATACCAGACCATGTTCCCCACT  100

seq1  TCCCCTCCCTGTCCCTTGTATACCCAGGTTCCCCCTGCCCCCTTGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCTGTCCCTTGTATACCCAGGTTCCCCCTGCCCCCTTGTGATT  150

seq1  GCTTTTTTTCTCCCTTCCAAGTGGGATTGAGGCATCCACACTTGGGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTCTCCCTTCCAAGTGGGATTGAGGCATCCACACTTGGGCCTT  200

seq1  TCGGCTTGTTGACCTTTGCGAGCTCTGTGGACTGTATCTTGGGTATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTGTTGACCTTTGCGAGCTCTGTGGACTGTATCTTGGGTATTCTG  250

seq1  TACTTTTTTTTCTTTTGCTAATATCCACTTATTAGTGAGTACGTACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTCTTTTGCTAATATCCACTTATTAGTGAGTACGTACCATG  300

seq1  CACGTCCTTTTGGGTGTGAGTTACATCACTCAGGATGATATTTTCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCTTTTGGGTGTGAGTTACATCACTCAGGATGATATTTTCTAGTT  350

seq1  CCACCCATTTGCCTGCAAAACTCGGGATATGACAGAGGACAACTTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATTTGCCTGCAAAACTCGGGATATGACAGAGGACAACTTACAAT  400

seq1  AGTTAGTTTCTCCTTTAAGTTTGTGAGCGCCAGGTATAACTGAAGCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTTCTCCTTTAAGTTTGTGAGCGCCAGGTATAACTGAAGCTATT  450

seq1  AGGCTCAGCAGCAAGTTCTTTGGACCACGGAGACACCTTGCTGCCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGCAGCAAGTTCTTTGGACCACGGAGACACCTTGCTGCCCCCAT  500

seq1  CACGTTTGTGTATGTATTTGCTTGTTTGTTTGTAGGCTGCAACAAATTAA  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACGTTTGTGTATGTATTTGCTTG-TTGTTTGTAGGCTGCAACAAATTAA  549

seq1  GTGTCTCTCACGTAGGTTGTGTTTTAAAAGTATCTGTAGCATTTCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTCACGTAGGTTGTGTTTTAAAAGTATCTGTAGCATTTCTTATA  599

seq1  TTGGATATTGAAAGAGAACAACACA-TCCACTAAAGTAAATAGA-GAAAA  648
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TTGGATATTGAAAGAGAACAACACATTCCACTAAAGTAAATAGAGGAAAA  649

seq1  ATGAAATAGCATGCATAAAATAACTGATGAG-TATCGAT-GAGTATGGAT  696
      ||||||||||||||||||||  ||||||||| ||||||| |||||| |||
seq2  ATGAAATAGCATGCATAAAAATACTGATGAGTTATCGATGGAGTAT-GAT  698

seq1  GAAAA-TGAGGGAGTAG-ACAAC-TATCAAGTTTATTTTATCT-GTGTTA  742
      ||||| ||||||||||| ||||| |||||||  |   |||||| ||| ||
seq2  GAAAATTGAGGGAGTAGAACAACTTATCAAG--TCAGTTATCTGGTGCTA  746

seq1  -GTGCC-TGTGTTT-GAATGAGGGTGTATCCACGAGGGTTCAGGA  784
       ||||| ||||||| ||||||||   ||||||||| || ||||||
seq2  GGTGCCTTGTGTTTGGAATGAGG--CTATCCACGAAGG-TCAGGA  788