BAC Information

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BAC

Clone NameB6Ng01-339P22
Chromosome5 (Build37)
Map Location 145,840,456 - 145,841,030
singlet/doubletsinglet
Overlap genenone
Upstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik
Downstream geneArpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P22.bB6Ng01-339P22.g
ACCGA123837GA123838
length9361,143
definitionB6Ng01-339P22.b B6Ng01-339P22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaagagagtaagcattgagttagccagtgcttacttgttagac
ttctgcaatgacaccaatttagtatccaaaatgagaagtctgtctgtgaa
aaaattagttgtcagggtagatggtgcactggcttctcatcacttttata
aaacacttgagattatcaacgtataaagggaaaagtttgggctggagaga
tggctcagtttaaaaagcacttgcagggctggagagatggctcagcggtt
aagagcactgactgctcttccagaggtcccgagttcaattcccagcaact
acatggtggctcaaagccatctgtaatgggatctgatgccctcttctggt
gtgtctgaagacagtcacagtgtattcacatatactaaataaatgaataa
acgaataaataaatggataaatatctttaaaaagcactcaccatacaact
ctgagttcacatcctcagaccccacacaaagccaatgtagccacatctat
aatggttctgtgtttatggctggatgggagagggacacagctaaatccta
ggacactcacaggccagctagcctggtgtgcacaggtatgaacaggaaac
gctgcctcttacaaggtataagacagggactgacaccggaggttgacctc
tgacctccaaaagcataccatagtacctgtgcaccaacactcacacacag
gaatgtgcatacacacatgcgcactgtatacacatacatcatatgcatgc
acatcatatgagattgggcagacctaacagataaaattgtacgcaggcta
gaagcttctgggactaggcttaggtcagcaacttagagggaactctaggc
tccctttaagttacaattacagttccttactctcggagagtcaagtacaa
attcaaagcatcatagccactgtctgaatcctttgc
gaattcaatttaaatgaagggacaacattcccaaacttatgggacacaat
gaagcagtgctaagagcaaagttcatagcactaagtgtcttcataaagaa
attggacagatctcaaactagcaacttaatagcacctgaaagcttccaaa
aagaagcagcagcagcagcagcagcagcagcagcaacagcacagccaacc
cacccaagaggtagatggcagaaaaaaatccctcagagaagaaatcagtc
aattagaaacaaaagagaacaatgcaaagaaacaacaaaaccaagagttg
gttctttgagaaaatcaacgagatagatcaacctttaaacaaactaaaag
gcagagagacagtatccaaattaaccaaatcagaaattgaaagggagaca
aacaacagacagtgaagaaatgggaagcatccttaggtcttacttcaaaa
cctggtactccacaacattggaaaatctaaatgaagtggacagttttctc
catagaaatcatttacttatagtaaaatgaagatcaggtaaaccatttaa
atagacctacaacccctaaggaaatagaacaattcattaaaagtctccac
ccaccccccaaaaaaacccaggacagactggacagttttagtgcagaatt
ctatgagacatttaaagctgagctcatattaatacacctcaaagtcttcc
acaaaattgaaacagaaggaatattgccaaactcattccatgaggccaca
gtcactctgatgcctaaaccacacagagacacaacaaacacaacaacaaa
gagaattccagaccaattttccttacaaacaatgaggcaaaaatactcaa
tgaaatactaccaccaaatccaagaacacatctaaaacatcatctgccac
gattaaaaaggcttctttccaaggatgcagggtaggtccaacatgaaaat
tcaccaatgaaatccaccatataaacaaactgaaaggaacaaaaacaaac
aaacatgatcatctcagtagatgctgacagtcttggacaaaaattcccag
acccctcatgtaaagttctgggaagatcaggatcaggctcacacgatgat
gcagcaccaatgaaggtatggctcactcatcgaattaaaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145840456_145841030
seq2: B6Ng01-339P22.b_51_625 (reverse)

seq1  CAGGCTAGCTGGCCTGTGAGTGTCCTAGGATTTAGCTGTGTCCCTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCTGGCCTGTGAGTGTCCTAGGATTTAGCTGTGTCCCTCTCCC  50

seq1  ATCCAGCCATAAACACAGAACCATTATAGATGTGGCTACATTGGCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCATAAACACAGAACCATTATAGATGTGGCTACATTGGCTTTGT  100

seq1  GTGGGGTCTGAGGATGTGAACTCAGAGTTGTATGGTGAGTGCTTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCTGAGGATGTGAACTCAGAGTTGTATGGTGAGTGCTTTTTAAA  150

seq1  GATATTTATCCATTTATTTATTCGTTTATTCATTTATTTAGTATATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATCCATTTATTTATTCGTTTATTCATTTATTTAGTATATGTGA  200

seq1  ATACACTGTGACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGTGACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCAT  250

seq1  TACAGATGGCTTTGAGCCACCATGTAGTTGCTGGGAATTGAACTCGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGCTTTGAGCCACCATGTAGTTGCTGGGAATTGAACTCGGGAC  300

seq1  CTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCC  350

seq1  TGCAAGTGCTTTTTAAACTGAGCCATCTCTCCAGCCCAAACTTTTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGCTTTTTAAACTGAGCCATCTCTCCAGCCCAAACTTTTCCCTT  400

seq1  TATACGTTGATAATCTCAAGTGTTTTATAAAAGTGATGAGAAGCCAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTTGATAATCTCAAGTGTTTTATAAAAGTGATGAGAAGCCAGTGC  450

seq1  ACCATCTACCCTGACAACTAATTTTTTCACAGACAGACTTCTCATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTACCCTGACAACTAATTTTTTCACAGACAGACTTCTCATTTTGG  500

seq1  ATACTAAATTGGTGTCATTGCAGAAGTCTAACAAGTAAGCACTGGCTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAATTGGTGTCATTGCAGAAGTCTAACAAGTAAGCACTGGCTAAC  550

seq1  TCAATGCTTACTCTCTTTGGAATTC  575
      |||||||||||||||||||||||||
seq2  TCAATGCTTACTCTCTTTGGAATTC  575