BAC Information

Click to search

BAC

Clone NameB6Ng01-340C03
Chromosome5 (Build37)
Map Location 83,974,034 - 83,975,244
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340C03.bB6Ng01-340C03.g
ACCGA123929GA123930
length1,2131,198
definitionB6Ng01-340C03.b B6Ng01-340C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcaggctagacttttctgtcctatattacatctatctatactt
gtaaaattgttgggagctcaaatatttatttttaaattttaactatcttg
atacttctttcctgggaaaagtatatttcatgttttcctcttttaatatt
ttttctctttaatccatgacctcttgcataattattttcacttccccaag
tcccccagaaacacataaaagaatagtatctactgagtccaacaacctta
cctatatgtgcttgtgtttaaggttaacaattttttatttggaaaactat
caggggctcttccctgggggcaaaaacaaaacaaaacaaaacaaaacaaa
acaaaacaaaacaaaacaaaacattcttcatccctcactaactgttggct
gtagttcttcagctaggagtgagaccatgataaatgttctacgtcccaca
tttccacattaactagtttagttttgcgaaggacttgtgcatacaaccac
atttttgagagttcatgggtgcagcattcctatagtgtctagaaaacact
accttgtggctttatacaatttgaattttacaatctgtctgttcctcctt
aatgatattatcagagcctgaagcatagtcatttgtaccaggtattcatt
ttttcttttggtaggtaccggcactttaacttattctctgcattttgacc
aacttttggtctttgtaggtaagttctatctacaaaaaaggaaataaaaa
cttcttaaattaggggtggagattcacatatatgcatgtaaaaggacaag
tgttcattcttggggtctgattgaaggtgtctaaaattaaagaacccctt
gtcacctttcctttgaacaaaacagattatggagccttggttcaagaggt
tttagaaaagaacaagagcaacaacagaagtaaatacaactcagctttta
tgatattttctcaaggatgtggctgccttctgccattttcctaacagcac
atcaaaaggcatggtttagcagattatttctttgtagaaggatatagcag
tcaatgtgactctgcagtgatattagcatcatctatgcagttaacatagt
cagattagtttaaaaagaaacataagatgagtctgatctgcttgatatgg
ataatactacggcaagaataatctaagctcagcttcctaattgtgaaaaa
acttatatagggt
gaattcttgattgatatttttgaggtgagtggaggccccatccctcaacc
aggggccatgtctatccactggatatgatctctacaggttctgtctccct
tttgttgggtatttcggctagtgtcctctctgttgggtcctggcatctgg
gactttctaatggataccccccagttacccctatctcactgctacacacc
tcctttcaaaatcctgaccctctgtactccccccatctcctcccatatct
gaactggacccctttccccctccccctcctcactccctcccagatccctc
tctcactctactttctggagatcattttcttcccacttgtgagtaggact
gtagcctccactctttgctgtgatctttcttcttgggtttcttatgtgga
aagattttctttccctttaaagaatcaagacacatgacgacatcatcctt
aactagattagttttgtatctatgcaatacctttttataataaaatccaa
acagctatggtataaattataattatatttatttgctttttccgtgttta
tcatttagaattaattcaatggcttttaacatgcttttgtacctacatga
ggctgttaaaagtgccaaggtacagtgagaataacatatatctgattata
ggactgtatgagtacttatgcatatgataatacatagtgaatatatatga
tcacaaaagaattaatgcatgcataattatataaataaaatgtaaggata
gatccacaaaattggatatatgaggtggatattatgaattttatttactc
agtaaataagagttgggtggatgaatgcatcctagaaattcctttaacaa
tctgaatctgatgctatggtttctcttagtattcattttagtatttgtta
gtcacaggaacaaacaggtaaaaaataattatgtaaccttgtattagctg
aaaatatctacatatgtattttcactatatatatgaatacatgtacatga
tttgcatttatgggcatatatggggagttaccatcacatattatttattg
tcatgatttagctacatgcagagttataagccttatacataaataaagag
ctgaatatatatgtaacctattctacaatctatttaattgaaaatatatg
tttaatatgtcaatttttccgaaacgtcaaaggacacgagtgattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83974034_83975244
seq2: B6Ng01-340C03.g_66_1263

seq1  GAATTCTTGATTGATATTTTTGAGGTGAGTGGAGGCCCCATCCCTCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTGATATTTTTGAGGTGAGTGGAGGCCCCATCCCTCAACC  50

seq1  AGGGGCCATGTCTATCCACTGGATATGATCTCTACAGGTTCTGTCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCATGTCTATCCACTGGATATGATCTCTACAGGTTCTGTCTCCCT  100

seq1  TTTGTTGGGTATTTCGGCTAGTGTCCTCTCTGTTGGGTCCTGGCATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGGTATTTCGGCTAGTGTCCTCTCTGTTGGGTCCTGGCATCTGG  150

seq1  GACTTTCTAATGGATACCCCCCAGTTACCCCTATCTCACTGCTACACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTAATGGATACCCCCCAGTTACCCCTATCTCACTGCTACACACC  200

seq1  TCCTTTCAAAATCCTGACCCTCTGTACTCCCCCCATCTCCTCCCATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAAAATCCTGACCCTCTGTACTCCCCCCATCTCCTCCCATATCT  250

seq1  GAACTGGACCCCTTTCCCCCTCCCCCTCCTCACTCCCTCCCAGATCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGACCCCTTTCCCCCTCCCCCTCCTCACTCCCTCCCAGATCCCTC  300

seq1  TCTCACTCTACTTTCTGGAGATCATTTTCTTCCCACTTGTGAGTAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCTACTTTCTGGAGATCATTTTCTTCCCACTTGTGAGTAGGACT  350

seq1  GTAGCCTCCACTCTTTGCTGTGATCTTTCTTCTTGGGTTTCTTATGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTCCACTCTTTGCTGTGATCTTTCTTCTTGGGTTTCTTATGTGGA  400

seq1  AAGATTTTCTTTCCCTTTAAAGAATCAAGACACATGACGACATCATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCTTTCCCTTTAAAGAATCAAGACACATGACGACATCATCCTT  450

seq1  AACTAGATTAGTTTTGTATCTATGCAATACCTTTTTATAATAAAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATTAGTTTTGTATCTATGCAATACCTTTTTATAATAAAATCCAA  500

seq1  ACAGCTATGGTATAAATTATAATTATATTTATTTGCTTTTTCCGTGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATGGTATAAATTATAATTATATTTATTTGCTTTTTCCGTGTTTA  550

seq1  TCATTTAGAATTAATTCAATGGCTTTTAACATGCTTTTGTACCTACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGAATTAATTCAATGGCTTTTAACATGCTTTTGTACCTACATGA  600

seq1  GGCTGTTAAAAGTGCCAAGGTACAGTGAGAATAACATATATCTGATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTAAAAGTGCCAAGGTACAGTGAGAATAACATATATCTGATTATA  650

seq1  GGACTGTATGAGTACTTATGCATATGATAATACATAGTGAATATATATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTATGAGTACTTATGCATATGATAATACATAGTGAATATATATGA  700

seq1  TCACAAAAGAATTAATGCATGCATAATTATATAAATAAAATGTAAGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGAATTAATGCATGCATAATTATATAAATAAAATGTAAGGATA  750

seq1  GATCCACAAAATTGGATATATGAGGTGGATATTATGAATTTTATTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAAAATTGGATATATGAGGTGGATATTATGAATTTTATTTACTC  800

seq1  AGTAAATAAGAGTTGGGTGGATGAATGCATCCTAGAAATTCCTTTAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAGAGTTGGGTGGATGAATGCATCCTAGAAATTCCTTTAACAA  850

seq1  TCTGAATCTGATGCTATGGTTTCTCTTAGTATTCATTTTAGTATTTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATCTGATGCTATGGTTTCTCTTAGTATTCATTTTAGTATTTGTTA  900

seq1  GTCACAGGAACAAACAGGTAAAAAAATAATTATGTAACCTTGTATTAGCT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCACAGGAACAAACAGGT-AAAAAATAATTATGTAACCTTGTATTAGCT  949

seq1  GAAAATATCTACATATGTATTTTCACTATATATATGAATACATGTACATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTACATATGTATTTTCACTATATATATGAATACATGTACATG  999

seq1  AATTTGCATTTATGGGCATATATGGGGAAGTTACCCATCACATAATTATA  1050
       |||||||||||||||||||||||||| ||||| ||||||||| ||||| 
seq2  -ATTTGCATTTATGGGCATATATGGGG-AGTTA-CCATCACAT-ATTAT-  1044

seq1  TAATTGTCATGATTTAGCTACATGCAGAGTTATAAAGCTTATACCATAAA  1100
      | |||||||||||||||||||||||||||||||||  |||||| ||||||
seq2  TTATTGTCATGATTTAGCTACATGCAGAGTTATAAGCCTTATA-CATAAA  1093

seq1  ATAAAAGAGCTGAATATATAATGGTAACATATTCTACAAATCTATTAATT  1150
         |||||||||||||||||   ||||| |||||||| |||||||| | |
seq2  --TAAAGAGCTGAATATATA--TGTAACCTATTCTAC-AATCTATTTAAT  1138

seq1  GGAAAATATATATGTATAATTATGT-AATTTTTTCGAACAGTCAAAGG--  1197
       ||||  |||||||| ||| ||||| ||||||| ||||  ||||||||  
seq2  TGAAA--ATATATGTTTAA-TATGTCAATTTTTCCGAAACGTCAAAGGAC  1185

seq1  ACGAGTGGATTACT  1211
      |||||| |||||||
seq2  ACGAGT-GATTACT  1198