BAC Information

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BAC

Clone NameB6Ng01-340C24
Chromosome5 (Build37)
Map Location 35,017,278 - 35,018,338
singlet/doubletsinglet
Overlap geneGprk2l
Upstream geneFgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14
Downstream geneHdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340C24.bB6Ng01-340C24.g
ACCGA123969GA123970
length1,0621,216
definitionB6Ng01-340C24.b B6Ng01-340C24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggatgcagtggtgagtgattcatctcaggactgtgctgtgca
attttatacttttgaatattaaaatctgggcctgacagagttggtagttg
tcttgatgttatatttccctcctcctctcctctcctttgatttttgagat
agggtctcactttgtaacccacactagcctggacctcactttataggcca
gggctctcacaatgtagccttgcctggccttgaacttgtagcagtccttc
tgccaccagctcctgattgcagtggttacagacatgcacaaccttcctgg
ctcctggtgagtaatttttttttaatttattatatgtaagtacactgtag
ctgtcttcagacactccagaagagggcgtcagatctcgttacggatggtt
gtgagccaccatgtagttgctgggatttgaactcgggacctttggaagag
cagtcgggtgctcttacccactgagccatctcaccagcccaagtaatttt
ttaatatgaaaaagcagcaagagatgagtactgctcttcacctggctttc
acctttaaaaactattttattttaaatgtgaatacctgcatgtttatgtg
gatgtatgccatatgtgtgtctgatgcccttggtggccagaagatggttc
ctctggaactggagttacaggttatttttagctaccatgtgggttctgaa
aactgaacctgggtcctcagaaagaagagcaaatgtgcttaattgctgaa
ccatttctttagccctgctttctccttttttttctctttttaagatttat
atatttatttatataagtacactgtagctgtagagatggttgtgagcctt
catgtggttgttgggaattgaagttgttggtttttttttttttttttaag
gacctctgctcactctgcttggccctgctcgctctggcctaaagatttat
tttattattatacataaggacactgtagctgacttcagacgcaccagaag
agggcatcagatcttattacagttggttgtgagctaccatgtgttgctgg
atttgaactcag

gaattctgcactaaagccatctggccctgggcttctttttggttggaagg
tttttaatgacgtcttctatttctttaggggatataggactgtttagata
gtttacatgatcttgatttaactttaggacatggtatatgtctagaaaat
caaccatttcatctagatttttccagttttgttgagttttgttgggcttt
tgtagtaggacctgatgatttcctcaggttctgttgttatgtctcccttt
tcagttctgattttgttagtttggatactgtctctgtgccccttagtttg
gctaggggcttatctatcttgttgattttcaaagatccagcttttggttt
tgttgattcttttatcagtttctttgtttctctttggttgattttggccc
tgagtttgactatttcctcctgtctactccttttggacacgtttgcttct
ttctgttctagggctttcaggtattctgttaagttactaatgtacgatct
ctccaatttctttttcttctttttttgggtttgaaaaactttgggagggc
agatcaggagagggataaagactggactgtaaaaaaatattaaagataaa
tatttaaaaaatttgtcacaaattatagcaattattaaaatataatttaa
ataggaaacaatagattaaaaactactactttaaaaacacaaactggagg
gaacaaaggagatagcttatgcaccaagcacaggatatgagttcgatccc
tatcatccacataaaaacccagacatagtagtgctcatttgtaatccctg
cactaggaagtcagaaaccagtgattctctgaggttaaggggcagccagc
caagtcgcatcagcagatcctagggcagtgaagactttatcttatcaaac
aagctggacagctcctgaggaaccatgcccaggaatgacactctcttacc
tttctatatacaggtactggtatgtaccttatacagtaacttttgaaaac
aaataaatgtgacatcatttactgaaaagtcatgtaaagctactggtggc
tagctgttctgtacacttgacatgaccatccttacatgagcaagttagct
gtggtgacttatatggaagaacttggagcccaagctgaacatacaaaagc
aggaaactcagacggtcctaggtcatgatgtcgtaatacttcctttttgg
gggagaaaagcaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35017278_35018338
seq2: B6Ng01-340C24.b_47_1108

seq1  GAATTCTTGGATGCAGTGGTGAGTGATTCATCTCAGGACTGTGCTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATGCAGTGGTGAGTGATTCATCTCAGGACTGTGCTGTGCA  50

seq1  ATTTTATACTTTTGAATATTAAAATCTGGGCCTGACAGAGTTGGTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACTTTTGAATATTAAAATCTGGGCCTGACAGAGTTGGTAGTTG  100

seq1  TCTTGATGTTATATTTCCCTCCTCCTCTCCTCTCCTTTGATTTTTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTTATATTTCCCTCCTCCTCTCCTCTCCTTTGATTTTTGAGAT  150

seq1  AGGGTCTCACTTTGTAACCCACACTAGCCTGGACCTCACTTTATAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCACTTTGTAACCCACACTAGCCTGGACCTCACTTTATAGGCCA  200

seq1  GGGCTCTCACAATGTAGCCTTGCCTGGCCTTGAACTTGTAGCAGTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCACAATGTAGCCTTGCCTGGCCTTGAACTTGTAGCAGTCCTTC  250

seq1  TGCCACCAGCTCCTGATTGCAGTGGTTACAGACATGCACAACCTTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAGCTCCTGATTGCAGTGGTTACAGACATGCACAACCTTCCTGG  300

seq1  CTCCTGGTGAGTAATTTTTTTTTAATTTATTATATGTAAGTACACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGAGTAATTTTTTTTTAATTTATTATATGTAAGTACACTGTAG  350

seq1  CTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACGGATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACGGATGGTT  400

seq1  GTGAGCCACCATGTAGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTAGTTGCTGGGATTTGAACTCGGGACCTTTGGAAGAG  450

seq1  CAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAAGTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAAGTAATTTT  500

seq1  TTAATATGAAAAAGCAGCAAGAGATGAGTACTGCTCTTCACCTGGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAAAAAGCAGCAAGAGATGAGTACTGCTCTTCACCTGGCTTTC  550

seq1  ACCTTTAAAAACTATTTTATTTTAAATGTGAATACCTGCATGTTTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAAAACTATTTTATTTTAAATGTGAATACCTGCATGTTTATGTG  600

seq1  GATGTATGCCATATGTGTGTCTGATGCCCTTGGTGGCCAGAAGATGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATGCCATATGTGTGTCTGATGCCCTTGGTGGCCAGAAGATGGTTC  650

seq1  CTCTGGAACTGGAGTTACAGGTTATTTTTAGCTACCATGTGGGTTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAACTGGAGTTACAGGTTATTTTTAGCTACCATGTGGGTTCTGAA  700

seq1  AACTGAACCTGGGTCCTCAGAAAGAAGAGCAAATGTGCTTAATTGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACCTGGGTCCTCAGAAAGAAGAGCAAATGTGCTTAATTGCTGAA  750

seq1  CCATTTCTTTAGCCCTGCTTTCTCCTTTTTTTTCTCTTTTTAAGATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTTAGCCCTGCTTTCTCCTTTTTTTTCTCTTTTTAAGATTTAT  800

seq1  ATATTTATTTATATAAGTACACTGTAGCTGTAGAGATGGTTGTGAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTATATAAGTACACTGTAGCTGTAGAGATGGTTGTGAGCCTT  850

seq1  CATGTGGTTGTTGGGAATTGAAGTTGTTGG--TTTTTTTTTTTTTTTAAG  898
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CATGTGGTTGTTGGGAATTGAAGTTGTTGGTTTTTTTTTTTTTTTTTAAG  900

seq1  GACCTCTGCTCACTCTGCTTGGCCCTGCTCGCTCTGGCCTAAAGATTTA-  947
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACCTCTGCTCACTCTGCTTGGCCCTGCTCGCTCTGGCCTAAAGATTTAT  950

seq1  TTTATTATTATACATAAGGACACTGTAGCTGACTTCAGACGCACCAGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTATACATAAGGACACTGTAGCTGACTTCAGACGCACCAGAAG  1000

seq1  AGGGCATCAGATCTTATTACAGGTGGTTGTGAGCTACCATGTGGTTGCTG  1047
      |||||||||||||||||||||| ||||||||||||||||||| |||||| 
seq2  AGGGCATCAGATCTTATTACAGTTGGTTGTGAGCTACCATGT-GTTGCT-  1048

seq1  GGATTTGAACTCAG  1061
      ||||||||||||||
seq2  GGATTTGAACTCAG  1062


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