BAC Information

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BAC

Clone NameB6Ng01-340H06
Chromosome5 (Build37)
Map Location 26,929,171 - 26,930,360
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340H06.bB6Ng01-340H06.g
ACCGA124154GA124155
length1,1981,207
definitionB6Ng01-340H06.b B6Ng01-340H06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgatggtgaggtgcccaccctatgtgagacagctgggttaccccaccatg
gctctgggaacattgcagaaggggtttgtggtgtgagagtttgaaaatgg
ggagatatgcaataaaaaatatgccacctggacacaacatagcctatgga
gtcatgaactcactgcctctatggtcatctgcacaagatctctacaagac
tggctcctcagcatttcttcatgagtagggggaagacatgagacccattc
ttccatgaggggctactggcaagtaacaattgtgtgtcatgttctgtagt
ttctcttggttaggaaatgggccccaaccatatacagacatgaagctcca
attaaacccaattgctgcacataaaaagaagatgtaaaagtagaaggggc
attggttgagaagaggggctccagagaaagagggaatggactgagaaatg
ttaatagaatgatgtaaaagtctggaactcattatagaaatatatgaaag
ttttaaacaataaaagtatcaaagtgtgcttttggtaactgaaccattat
gcttctactggagaagaaaattttctttgtgcagtaaagcattgtaacat
ttatcatacacaatagtctaggaccagaggcaagggtctctaggcaagtt
caggcgagcattacctggcaggacagtgtgcaatgttcagtatgttcatg
ctggggcttcagaagcaaggctgcagtggtgccgtacagggcagcacagg
tgtgtgctgctagcaacatcaccagctcagacattttgtttcaaataaag
tcttggttattgcactggtcggagatatttactgctatcaccagtttttc
caacctatatactcaattatacccccacatggggctgtgaaatatagttt
aaggagaggagtctaaaactagaatacactctgtgcatacttcactgtcc
ctttggaacagacaactttcttaccaccctctcttcactcactggggtca
ggacaccattggcttcccacactctctgattgaccatattttctttatca
atttagatttgatttgtggagtatcacacatggtacctgtattatatatt
ctcccctctttgttcagttctcccagttatccactctccttgtcatcatc
tcttatcatggtgtgtttggttggtcgtatcagtcttgcactgacgta
gaattcactccaaggcgttacttaatcatctaaaaggtgttgtgtcagat
atagaagtcatttcataaatgactgaaatcttaagagaatctgaacacag
tgctccaactctttacactgggaggttctggccaattagcctgcagagac
ttcaacataggtgtggctctcttctttggaacttcaattcacagaagtaa
agagccagatgattgaatgttaaatgtcctttttaaggggaaggggtggt
aggggctgcttgggtcagaatggttcttagagatgaatgacaaaggccct
ctgcatttggtgctaggcttcctgttcttgctctttctttaccatgggct
tagtcttctttcattaatgacacttaagacaatcagaggtaatcatatta
ttttttgaggaatacaatctttagataagagagcctttccctgcatttcc
tgccctcagggcctcttggtctgaagcccaaagcagcacactttatggta
ttcctttcaaaagcccagcaaactgttaataggaaataactactttcatc
ctttttttttgcctagcactcttgggctcacacaaagcatgggttggtgg
ttggcagttggctggggagttctgttactgcagtgaactactaaccatct
caaggctctcctgaggaccagccacaggccatcccttgttagtgtttcca
gggttattaggatcaaaaccagggctctggaagtcacaacaagcttagcg
actaattcccaatgtgcaagttgaagagtagagagtcagagatttgtcca
acctggcccaatttgggaagaggaacaaataaggggtcttattgcaagtt
tgtcttcagagttcctgacaggttgggagtagatttgaatagaagataaa
attgtgtgcatgacctaaagagctgttgtccaagttgtagccccacccat
cacaagaccatatctcctgtcttcagctcctacatatagtgtctgataag
ttgcagaacttatgtgaaatctcttccctgaaaggcagctctttcctagc
tccatcgatctccagccttttcctcttactccatgtagagtcttattctc
aaggataaactcatttctgttatgatccttgcacattgagtggctttctg
aaggaaccacacagccaatacgtctccatgtgaggttttatttgggaaag
aaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26929171_26930360
seq2: B6Ng01-340H06.g_66_1272

seq1  GAATTCACTCCAAGGCGTTACTTAATCATCTAAAAGGTGTTGTGTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAAGGCGTTACTTAATCATCTAAAAGGTGTTGTGTCAGAT  50

seq1  ATAGAAGTCATTTCATAAATGACTGAAATCTTAAGAGAATCTGAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTCATTTCATAAATGACTGAAATCTTAAGAGAATCTGAACACAG  100

seq1  TGCTCCAACTCTTTACACTGGGAGGTTCTGGCCAATTAGCCTGCAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAACTCTTTACACTGGGAGGTTCTGGCCAATTAGCCTGCAGAGAC  150

seq1  TTCAACATAGGTGTGGCTCTCTTCTTTGGAACTTCAATTCACAGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATAGGTGTGGCTCTCTTCTTTGGAACTTCAATTCACAGAAGTAA  200

seq1  AGAGCCAGATGATTGAATGTTAAATGTCCTTTTTAAGGGGAAGGGGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGATGATTGAATGTTAAATGTCCTTTTTAAGGGGAAGGGGTGGT  250

seq1  AGGGGCTGCTTGGGTCAGAATGGTTCTTAGAGATGAATGACAAAGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGCTTGGGTCAGAATGGTTCTTAGAGATGAATGACAAAGGCCCT  300

seq1  CTGCATTTGGTGCTAGGCTTCCTGTTCTTGCTCTTTCTTTACCATGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGGTGCTAGGCTTCCTGTTCTTGCTCTTTCTTTACCATGGGCT  350

seq1  TAGTCTTCTTTCATTAATGACACTTAAGACAATCAGAGGTAATCATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTTTCATTAATGACACTTAAGACAATCAGAGGTAATCATATTA  400

seq1  TTTTTTGAGGAATACAATCTTTAGATAAGAGAGCCTTTCCCTGCATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGGAATACAATCTTTAGATAAGAGAGCCTTTCCCTGCATTTCC  450

seq1  TGCCCTCAGGGCCTCTTGGTCTGAAGCCCAAAGCAGCACACTTTATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGGGCCTCTTGGTCTGAAGCCCAAAGCAGCACACTTTATGGTA  500

seq1  TTCCTTTCAAAAGCCCAGCAAACTGTTAATAGGAAATAACTACTTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCAAAAGCCCAGCAAACTGTTAATAGGAAATAACTACTTTCATC  550

seq1  CTTTTTTTTTGCCTAGCACTCTTGGGCTCACACAAAGCATGGGTTGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTGCCTAGCACTCTTGGGCTCACACAAAGCATGGGTTGGTGG  600

seq1  TTGGCAGTTGGCTGGGGAGTTCTGTTACTGCAGTGAACTACTAACCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTTGGCTGGGGAGTTCTGTTACTGCAGTGAACTACTAACCATCT  650

seq1  CAAGGCTCTCCTGAGGACCAGCCACAGGCCATCCCTTGTTAGTGTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTCCTGAGGACCAGCCACAGGCCATCCCTTGTTAGTGTTTCCA  700

seq1  GGGTTATTAGGATCAAAACCAGGGCTCTGGAAGTCACAACAAGCTTAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTAGGATCAAAACCAGGGCTCTGGAAGTCACAACAAGCTTAGCG  750

seq1  ACTAATTCCCAATGTGCAAGTTGAAGAGTAGAGAGTCAGAGATTTGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCCCAATGTGCAAGTTGAAGAGTAGAGAGTCAGAGATTTGTCCA  800

seq1  ACCTGG-CCAAATTGGGAAGAGGAACAAATAAGGGGTC-TATTGCAAGTT  848
      |||||| |||| |||||||||||||||||||||||||| |||||||||||
seq2  ACCTGGCCCAATTTGGGAAGAGGAACAAATAAGGGGTCTTATTGCAAGTT  850

seq1  TGTCTTCAGAG-TCCTGACAGGTT-GGAGTAGATTTGAATAGAAGATAAA  896
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TGTCTTCAGAGTTCCTGACAGGTTGGGAGTAGATTTGAATAGAAGATAAA  900

seq1  A-TGTGTGCATGA-CTAAGGAGCTGTTGTCCAAG-TGTAGCCCCACCCAT  943
      | ||||||||||| |||| ||||||||||||||| |||||||||||||||
seq2  ATTGTGTGCATGACCTAAAGAGCTGTTGTCCAAGTTGTAGCCCCACCCAT  950

seq1  CAC-AGACC-CATCT-CTGTC-TCAGCTCCTACATATAG-GTCTGATAAG  988
      ||| |||||  |||| ||||| ||||||||||||||||| ||||||||||
seq2  CACAAGACCATATCTCCTGTCTTCAGCTCCTACATATAGTGTCTGATAAG  1000

seq1  TTGTCAGAAC-TATGTGAAATCTC-TCCCTGAAAGGCCAGCTCCTTCTCT  1036
      ||| |||||| ||||||||||||| ||||||||||| |||||| ||| ||
seq2  TTG-CAGAACTTATGTGAAATCTCTTCCCTGAAAGG-CAGCTCTTTC-CT  1047

seq1  AGCTCCATCGATCTTCAGC--TTTTCTCTTACTCCAATGTAAGAGTCTAA  1084
      |||||||||||||| ||||  ||| |||||||||| |||| ||||||| |
seq2  AGCTCCATCGATCTCCAGCCTTTTCCTCTTACTCC-ATGT-AGAGTCTTA  1095

seq1  TTCTCCAAGATAAA-TCATTCCTGTTATGAT-CTTGCACATTGAGTGGC-  1131
      ||||| | |||||| ||||| |||||||||| ||||||||||||||||| 
seq2  TTCTCAAGGATAAACTCATTTCTGTTATGATCCTTGCACATTGAGTGGCT  1145

seq1  TTCAGAAGG-ACCACACCAGGCCAAACAGTTCCATGTGAGGTTT--ATTG  1178
      ||| ||||| |||||| ||| | | ||   ||||||||||||||   |||
seq2  TTCTGAAGGAACCACA-CAGCCAATACGTCTCCATGTGAGGTTTTATTTG  1194

seq1  GGAGAGAGGGGG-  1190
      ||| ||| |||| 
seq2  GGAAAGAAGGGGG  1207