BAC Information

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BAC

Clone NameB6Ng01-340I19
Chromosome5 (Build37)
Map Location 108,207,515 - 108,208,755
singlet/doubletsinglet
Overlap geneEvi5
Upstream geneEG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473
Downstream gene1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I19.bB6Ng01-340I19.g
ACCGA124218GA124219
length1,2291,207
definitionB6Ng01-340I19.b B6Ng01-340I19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgctaagagtaaggacaaaggcctatccaaagtaaagagcaa
atgggaacagtctctggatggctttgacaagagaggagcaagtctgagaa
ataattaggacctgttacacagaaccgaagaactttggcttttctctgag
caacatggaaaatcactgaaaggttctgagtatatcagagatgagctaga
taacatttagcctattaaaatgcttaaattaaaccttgtttagagtaatg
cttgtaagagtgtgtcatctttagagtggtgggaaatggcagaaatcacc
ttttctctgttggtgttttccactgctctgtggatccaaatgttgtttga
accctgtttttacattgacaatatatagaattgtctctacttttcaagta
gtgggacaaggcatcgaaaagttcattttagctccgttgaggaaaatagg
tgagaattaaacccatgcttcctgattcttagtcctggaactgagtttgt
attaggtgatttaaaaaaaaaaaaaaaaagcatgtttgttgtcttatcaa
aaccacattaaactgtgtactaagtgaggctttacgtttgtactgctatg
ttacaaataacggaaagttttcatttaaaatggtatgggtctactcaaac
ctaactttggtactgttcctggtactttgtaacatttacccacttttgct
agtttgcccaatagataacctctagggatgcctcagatgggcaatacccc
aaccactcttggcttagaaaacgcccactcacaattctgttctgacagag
aatgtgggatctaggtttaaatcagtgtgcccagagcagcctgcactttt
gacagagatagaaaggaagtgataagctctttactaccactttaaaattt
taatccttttaatggtgtgaaattacagtgtgatttctgaattatggaat
ttaccataagcttgtaattgatttgtactttccagcttctaaattaatag
ttgcacagtgggtgatagttaatatgcttatgtcgtagctgcaaacttct
ttctgtttgataagattcatctgatctcaaagtttatttctttatttgtt
tcccttttgaacactattaaatgtaaaatattttctcttaaggctttgct
cagcatctaaatgtaatgctagttgtaccattctccaacaaagagagcgt
ggccgatagggaacataatcccaaccctg
gaattcaagaagctggactccagaaaatcaaataaccctatttaagaaat
ggggtacagagcaaaacaaagaattctcaactgaggaataccgaatggct
gagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgca
aatcgaacaaccctgagattccacctcataccagtcagaatggctaagat
caaatattcaggtgacagcagatgctggcgagaatgtggagaaagaggaa
cactcctccatgctggtgggattgcaagctgatacaaccactctggaaat
cagtctgacggttcctcagaaaattgaacataggtactaccaaaagatcc
agcaatacctttcctgggcatatacccagaagatgttccaacttgtaata
aggacacgtgctccactatgttcatagcagccttacttataatagccaga
agctggaaaggacccagatgtccctcaacagaggaatggatacagaaaat
gtggtacatttacacaatggtgtactactcgggtattaaaatcatgaatt
tatgaatttatgagattcctaggcaaatggatggatctggaggatatcat
cctgagtgaggtaacccaatcacaaaagaacacacataatatgcactcac
tgataagcagatattagcccggaaacttagaatacccaagacacaatttg
aaaaacacatgaaactcaagaagaaggaagactaaagtgtgatacttcat
tccttcttagaatggggaacaaaacacccatggaaggagttacagcaaca
aactttggagctgagatggaaggatggaccatctagagactgccccaccc
agggatctatcccataaacaaccaccaaacccagacactattgcatatgc
cagcaagattttgctgacaggaccctgatatagctgtctcttgtgagcct
aggccggggcctagcaaacacagagtgtatgctcacagtcatctatgatg
gatcacaggccccatgaggagctagacaagtacccagagctaaagggtct
gcaaccctaatagagaacaacaatatgactaacagtacccctagagcttg
tgtcctctagtgcaatgtaggcagaaggatggcctagtcgcatcatgtag
gaaacgccttgtatggaatgaatatatggcctgatatatgcagaggagaa
tgattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108207515_108208755
seq2: B6Ng01-340I19.b_43_1271 (reverse)

seq1  CAGGGTGGG----ATAGTCCCTAT--GCCCAGCTCTCTTTGTT-GAGATA  43
      |||||| ||    ||  |||||||  |||  |||||||||||| ||||  
seq2  CAGGGTTGGGATTATGTTCCCTATCGGCCACGCTCTCTTTGTTGGAGAAT  50

seq1  GTTACAAACTAGCTATTTCTACATTTTAGAATGCCTGAAGCAAAAGCCCT  93
      | ||| ||||||| ||   |||| ||||| ||| ||| ||| |||||| |
seq2  GGTAC-AACTAGC-AT---TACA-TTTAG-ATG-CTG-AGC-AAAGCCTT  90

seq1  AAAAGAGAAATATTTTACAATTTAATTAAGTTGTTCAAAAGGGAAAC-AA  142
      || ||| ||||||||||| |||||||  || |||||||||||||||| ||
seq2  AAGAGA-AAATATTTTAC-ATTTAAT--AG-TGTTCAAAAGGGAAACAAA  135

seq1  TAAAGAAATATACTTTGAGGATCAGATGGAATCTTATCAAACAGAAAGAA  192
      |||||||||| ||||||| |||||||| ||||||||||||||||||||||
seq2  TAAAGAAATAAACTTTGA-GATCAGAT-GAATCTTATCAAACAGAAAGAA  183

seq1  GTTTGCCAGCTACGACAT-AGCATATAAACTATCACCCACTGTGCAACTA  241
      ||||| |||||||||||| ||||||| |||||||||||||||||||||||
seq2  GTTTG-CAGCTACGACATAAGCATATTAACTATCACCCACTGTGCAACTA  232

seq1  TTAATTTAGGAAGCTGGAAAGTACAAATCAATTACAAAGCTTTATGGTAA  291
      |||||||| |||||||||||||||||||||||||| |||| |||||||||
seq2  TTAATTTA-GAAGCTGGAAAGTACAAATCAATTAC-AAGC-TTATGGTAA  279

seq1  ATTCCATAATTCAGAAATCACACTGTAATTTCACACCATTAAAAGGATTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATAATTCAGAAATCACACTGTAATTTCACACCATTAAAAGGATTA  329

seq1  AAATTTTAAAGTGGTAGTAAAGAGCTTATCACTTCCTTTCTATCTCTGTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAGTGGTAGTAAAGAGCTTATCACTTCCTTTCTATCTCTGTC  379

seq1  AAAAGTGCAGGCTGCTCTGGGCACACTGATTTAAACCTAGATCCCACATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCAGGCTGCTCTGGGCACACTGATTTAAACCTAGATCCCACATT  429

seq1  CTCTGTCAGAACAGAATTGTGAGTGGGCGTTTTCTAAGCCAAGAGTGGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCAGAACAGAATTGTGAGTGGGCGTTTTCTAAGCCAAGAGTGGTT  479

seq1  GGGGTATTGCCCATCTGAGGCATCCCTAGAGGTTATCTATTGGGCAAACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATTGCCCATCTGAGGCATCCCTAGAGGTTATCTATTGGGCAAACT  529

seq1  AGCAAAAGTGGGTAAATGTTACAAAGTACCAGGAACAGTACCAAAGTTAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTGGGTAAATGTTACAAAGTACCAGGAACAGTACCAAAGTTAG  579

seq1  GTTTGAGTAGACCCATACCATTTTAAATGAAAACTTTCCGTTATTTGTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTAGACCCATACCATTTTAAATGAAAACTTTCCGTTATTTGTAA  629

seq1  CATAGCAGTACAAACGTAAAGCCTCACTTAGTACACAGTTTAATGTGGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGTACAAACGTAAAGCCTCACTTAGTACACAGTTTAATGTGGTT  679

seq1  TTGATAAGACAACAAACATGCTTTTTTTTTTTTTTTTTAAATCACCTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGACAACAAACATGCTTTTTTTTTTTTTTTTTAAATCACCTAAT  729

seq1  ACAAACTCAGTTCCAGGACTAAGAATCAGGAAGCATGGGTTTAATTCTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCAGTTCCAGGACTAAGAATCAGGAAGCATGGGTTTAATTCTCA  779

seq1  CCTATTTTCCTCAACGGAGCTAAAATGAACTTTTCGATGCCTTGTCCCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCCTCAACGGAGCTAAAATGAACTTTTCGATGCCTTGTCCCAC  829

seq1  TACTTGAAAAGTAGAGACAATTCTATATATTGTCAATGTAAAAACAGGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAAGTAGAGACAATTCTATATATTGTCAATGTAAAAACAGGGT  879

seq1  TCAAACAACATTTGGATCCACAGAGCAGTGGAAAACACCAACAGAGAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAACATTTGGATCCACAGAGCAGTGGAAAACACCAACAGAGAAAA  929

seq1  GGTGATTTCTGCCATTTCCCACCACTCTAAAGATGACACACTCTTACAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTCTGCCATTTCCCACCACTCTAAAGATGACACACTCTTACAAG  979

seq1  CATTACTCTAAACAAGGTTTAATTTAAGCATTTTAATAGGCTAAATGTTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCTAAACAAGGTTTAATTTAAGCATTTTAATAGGCTAAATGTTA  1029

seq1  TCTAGCTCATCTCTGATATACTCAGAACCTTTCAGTGATTTTCCATGTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCATCTCTGATATACTCAGAACCTTTCAGTGATTTTCCATGTTG  1079

seq1  CTCAGAGAAAAGCCAAAGTTCTTCGGTTCTGTGTAACAGGTCCTAATTAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAAAGCCAAAGTTCTTCGGTTCTGTGTAACAGGTCCTAATTAT  1129

seq1  TTCTCAGACTTGCTCCTCTCTTGTCAAAGCCATCCAGAGACTGTTCCCAT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACTTGCTCCTCTCTTGTCAAAGCCATCCAGAGACTGTTCCCAT  1179

seq1  TTGCTCTTTACTTTGGATAGGCCTTTGTCCTTACTCTTAGCAGTGAATTC  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTACTTTGGATAGGCCTTTGTCCTTACTCTTAGCAGTGAATTC  1229