BAC Information

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BAC

Clone NameB6Ng01-341B15
Chromosome5 (Build37)
Map Location 77,465,034 - 77,584,382
singlet/doubletdoublet
Overlap gene1700023E05Rik, Hod
Upstream geneSrd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9
Downstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341B15.bB6Ng01-341B15.g
ACCGA124588GA124589
length422405
definitionB6Ng01-341B15.b B6Ng01-341B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,465,034 - 77,465,461)(77,583,972 - 77,584,382)
sequence
tcttttttcttcattctacaagcttatgccctttattttgctgaatgttg
atttaaaaaaaataaaataaaatttaagccaagtgaagtagcacatgcct
ttaatcccagcactctggaaacaagaggcagatgggtctctgtgagttcc
agtcattttctaaatctgttttaaattttttctcccatttttaaatcatg
attttgtaggggagtacactgtaaccatcctgttcttgcatttattcaag
ctaaccaaatttccttgatggttgtttattgtcatttagaaagtgatgag
aagatggcctagtcagccatcattgggaagagaggccccttggtcttgca
aactttatatgccctagtacaggggaacaccagggccaagaagtgggagt
gggtgggtaggagagctgggcg
ttttggagatgttcccgccacattggtctcggtcatctctatccccagcc
tctagccaagtgcctgactcctaataggagttgagtatgttttctacttg
gattatgtaactgtctttcctgttggtgatgctctgcgccacacactctc
atggtgataggtgacaaagttgagaggcatgaagccaggctggttgaagg
cgttcctggcgaggtaacacccagagacaacatgctcaagagctggatga
aattcaagctgtggaatgcagttgaccaagactgcctgggtcaagagcct
ctcccatgctttgctcttgccttctctctccacaaaggaatgtgtcttag
accatttctttgtactccagaaaaaaacgtgtgaagtgatgggggaggaa
tggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77465034_77465461
seq2: B6Ng01-341B15.b_45_472

seq1  GAATTCTCTTTTTTCTTCATTCTACAAGCTTATGCCCTTTATTTTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTTCTTCATTCTACAAGCTTATGCCCTTTATTTTGCTGA  50

seq1  ATGTTGATTTAAAAAAAATAAAATAAAATTTAAGCCAAGTGAAGTAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATTTAAAAAAAATAAAATAAAATTTAAGCCAAGTGAAGTAGCAC  100

seq1  ATGCCTTTAATCCCAGCACTCTGGAAACAAGAGGCAGATGGGTCTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAATCCCAGCACTCTGGAAACAAGAGGCAGATGGGTCTCTGTG  150

seq1  AGTTCCAGTCATTTTCTAAATCTGTTTTAAATTTTTTCTCCCATTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTCATTTTCTAAATCTGTTTTAAATTTTTTCTCCCATTTTTAA  200

seq1  ATCATGATTTTGTAGGGGAGTACACTGTAACCATCCTGTTCTTGCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTTTGTAGGGGAGTACACTGTAACCATCCTGTTCTTGCATTTA  250

seq1  TTCAAGCTAACCAAATTTCCTTGATGGTTGTTTATTGTCATTTAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTAACCAAATTTCCTTGATGGTTGTTTATTGTCATTTAGAAAGT  300

seq1  GATGAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGT  350

seq1  CTTGCAAACTTTATATGCCCTAGTACAGGGGAACACCAGGGCCAAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAACTTTATATGCCCTAGTACAGGGGAACACCAGGGCCAAGAAGT  400

seq1  GGGAGTGGGTGGGTAGGAGAGCTGGGCG  428
      ||||||||||||||||||||||||||||
seq2  GGGAGTGGGTGGGTAGGAGAGCTGGGCG  428

seq1: chr5_77583972_77584382
seq2: B6Ng01-341B15.g_67_477 (reverse)

seq1  TCCCATTCCTCCCCCATCACTTCACACGTTTTTTTCTGGAGTACAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCCTCCCCCATCACTTCACACGTTTTTTTCTGGAGTACAAAGAA  50

seq1  ATGGTCTAAGACACATTCCTTTGTGGAGAGAGAAGGCAAGAGCAAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTAAGACACATTCCTTTGTGGAGAGAGAAGGCAAGAGCAAAGCAT  100

seq1  GGGAGAGGCTCTTGACCCAGGCAGTCTTGGTCAACTGCATTCCACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGCTCTTGACCCAGGCAGTCTTGGTCAACTGCATTCCACAGCTT  150

seq1  GAATTTCATCCAGCTCTTGAGCATGTTGTCTCTGGGTGTTACCTCGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCATCCAGCTCTTGAGCATGTTGTCTCTGGGTGTTACCTCGCCAG  200

seq1  GAACGCCTTCAACCAGCCTGGCTTCATGCCTCTCAACTTTGTCACCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCCTTCAACCAGCCTGGCTTCATGCCTCTCAACTTTGTCACCTATC  250

seq1  ACCATGAGAGTGTGTGGCGCAGAGCATCACCAACAGGAAAGACAGTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAGTGTGTGGCGCAGAGCATCACCAACAGGAAAGACAGTTACA  300

seq1  TAATCCAAGTAGAAAACATACTCAACTCCTATTAGGAGTCAGGCACTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAGTAGAAAACATACTCAACTCCTATTAGGAGTCAGGCACTTGG  350

seq1  CTAGAGGCTGGGGATAGAGATGACCGAGACCAATGTGGCGGGAACATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCTGGGGATAGAGATGACCGAGACCAATGTGGCGGGAACATCTC  400

seq1  CAAAAGAATTC  411
      |||||||||||
seq2  CAAAAGAATTC  411