BAC Information

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BAC

Clone NameB6Ng01-341D24
Chromosome5 (Build37)
Map Location 11,109,633 - 11,110,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
Downstream geneLOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341D24.bB6Ng01-341D24.g
ACCGA124694GA124695
length1,099631
definitionB6Ng01-341D24.b B6Ng01-341D24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatactatttcaatagaataacctagctaatatgtagctctag
attacaaaatataaaggctcttttcaaaatgcttctgtaggtgttaaatt
aattccaaatacatctgtattaacttttctgttaagctttttggaattgt
aatacatttttgtttatggcatgaaattcattcagtagtttgagtacaag
tgaatataaagggttaacacaaagctggaatatgatggtgagctctggca
cttaactaaatatccttatattatggtatgaactatgtcagacattctgc
ctttaccttgctaccaacaacatatacaagcaaaacccaatgaaactgaa
gaaaacaaaacaaaacaagaagatagtgtcaaaataatgcataattacga
ttattggtaaatcatatcattttggagaattacaattgcccactttcagt
gcttcttttgctttattaaagcttacagttagatcttttgaaaacccagt
taggattaaattaaatcccagaatgagctacatatgcaaaattttctcag
accttactgtcatcttgcatttttttttaaaaataaaatgtcttaaactg
tcttgagtttgataatcctacaagctaaaaagaggaataattgtgccgtg
tttcttaaattttcagattaaaatatttggtgcacaatttaaaaagaaag
gtcatggggaggaatatccagaggatgatactttgcccgaggaaaatgta
cagctcattgcctacgttaaatgactctgcaactgcacaagaacctaaga
gatggtactcaccactctaatataaggagcacacagccaagctttgtggt
tatttttttttttcacgaattgcttgtttttttccccctaaaatggttca
acatcagtttaaacattaccagaaaataattattactcaccatctgtctt
agaatctgagtattatattccccattataaaattagtatcacacccttag
aaaggttatggaattcatcattcattggattatacggacattacagattc
agaacaaattatcagcactaaatattattgttagaactgccataacaaa
gaattcccaagatataattcacaaaacccatgaaactcgagaagaaagaa
caccaaactatggatatcttgatccttagaatgggaaacaaaatacccat
ggaaggagttacagagacaaagtgtggagcagagactgaaggaataacca
tccatagactgtttcacctggggatccatcccatatacaacctccaatcc
cagacactactgtggacgccaacaaaagcttgctgacaggaacctgatat
agctgtctcctgagagtctctgccagttactaaataatacataagtggat
gctcacagccatccattggacagagcacagggtccccaatgaaggagcta
gagaaattatccgaggagctgaagggatttacagccccataggaggaaca
acagtgtgaacaaaaaagtatccccagagctctctgggagtaaaccacca
accaaagaaaacacatggtaggactccttgctatagctgcatatgtagca
aagggtagcctagttagttatcaatgggaggagaggcccttgatcctgta
aaggttctatgctctagtataaagtcatgccaggcccaggaagcaggaga
gggtgggttggtaagccgaggggggggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11109633_11110738
seq2: B6Ng01-341D24.b_48_1146 (reverse)

seq1  TTTGTTATTGCAATTTCTAACAATAATTATTTAGTGCTGATTATTTTGTT  50
      |||||||| || | |||||||||||| ||||||||||||| || ||||||
seq2  TTTGTTATGGC-AGTTCTAACAATAA-TATTTAGTGCTGA-TAATTTGTT  47

seq1  CTTGAATTCTGTATTGTCTGTAT-ATCAAATGAATGATGAATTTCCATAA  99
      | |||| |||||| |||| |||| ||| ||||||||||||| ||||||||
seq2  C-TGAA-TCTGTAATGTCCGTATAATCCAATGAATGATGAA-TTCCATAA  94

seq1  CCCTTTCTAAGGTTGTGATTACTAAATTTTTATAATGGGGAATATAATAC  149
       ||||||||||| ||||| ||||||  |||||||||||||||||||||||
seq2  -CCTTTCTAAGGGTGTGA-TACTAA--TTTTATAATGGGGAATATAATAC  140

seq1  TCAGATTCTAAGACAGATGGTGAGTAATAATTTATTTTCTGGTAATGTTT  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGATTCTAAGACAGATGGTGAGTAATAA-TTATTTTCTGGTAATGTTT  189

seq1  -AACTGATGTTGAA-CATTTTAGGGGGAAAAAAACAAGCAATTCGTG-AA  246
       ||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  AAACTGATGTTGAACCATTTTAGGGGGAAAAAAACAAGCAATTCGTGAAA  239

seq1  AAAAAAAATAACCACAAAGCTTGGCTGTGTGCTCCTTATATTAGAGTGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAACCACAAAGCTTGGCTGTGTGCTCCTTATATTAGAGTGGT  289

seq1  GAGTACCATCTCTTAGGTTCTTGTGCAGTTGCAGAGTCATTTAACGTAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCATCTCTTAGGTTCTTGTGCAGTTGCAGAGTCATTTAACGTAGG  339

seq1  CAATGAGCTGTACATTTTCCTCGGGCAAAGTATCATCCTCTGGATATTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGCTGTACATTTTCCTCGGGCAAAGTATCATCCTCTGGATATTCC  389

seq1  TCCCCATGACCTTTCTTTTTAAATTGTGCACCAAATATTTTAATCTGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGACCTTTCTTTTTAAATTGTGCACCAAATATTTTAATCTGAAA  439

seq1  ATTTAAGAAACACGGCACAATTATTCCTCTTTTTAGCTTGTAGGATTATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAACACGGCACAATTATTCCTCTTTTTAGCTTGTAGGATTATC  489

seq1  AAACTCAAGACAGTTTAAGACATTTTATTTTTAAAAAAAAATGCAAGATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGACAGTTTAAGACATTTTATTTTTAAAAAAAAATGCAAGATG  539

seq1  ACAGTAAGGTCTGAGAAAATTTTGCATATGTAGCTCATTCTGGGATTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGGTCTGAGAAAATTTTGCATATGTAGCTCATTCTGGGATTTAA  589

seq1  TTTAATCCTAACTGGGTTTTCAAAAGATCTAACTGTAAGCTTTAATAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTAACTGGGTTTTCAAAAGATCTAACTGTAAGCTTTAATAAAG  639

seq1  CAAAAGAAGCACTGAAAGTGGGCAATTGTAATTCTCCAAAATGATATGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGCACTGAAAGTGGGCAATTGTAATTCTCCAAAATGATATGAT  689

seq1  TTACCAATAATCGTAATTATGCATTATTTTGACACTATCTTCTTGTTTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATAATCGTAATTATGCATTATTTTGACACTATCTTCTTGTTTTG  739

seq1  TTTTGTTTTCTTCAGTTTCATTGGGTTTTGCTTGTATATGTTGTTGGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCTTCAGTTTCATTGGGTTTTGCTTGTATATGTTGTTGGTAG  789

seq1  CAAGGTAAAGGCAGAATGTCTGACATAGTTCATACCATAATATAAGGATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAAGGCAGAATGTCTGACATAGTTCATACCATAATATAAGGATA  839

seq1  TTTAGTTAAGTGCCAGAGCTCACCATCATATTCCAGCTTTGTGTTAACCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAAGTGCCAGAGCTCACCATCATATTCCAGCTTTGTGTTAACCC  889

seq1  TTTATATTCACTTGTACTCAAACTACTGAATGAATTTCATGCCATAAACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCACTTGTACTCAAACTACTGAATGAATTTCATGCCATAAACA  939

seq1  AAAATGTATTACAATTCCAAAAAGCTTAACAGAAAAGTTAATACAGATGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTACAATTCCAAAAAGCTTAACAGAAAAGTTAATACAGATGT  989

seq1  ATTTGGAATTAATTTAACACCTACAGAAGCATTTTGAAAAGAGCCTTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATTAATTTAACACCTACAGAAGCATTTTGAAAAGAGCCTTTAT  1039

seq1  ATTTTGTAATCTAGAGCTACATATTAGCTAGGTTATTCTATTGAAATAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAATCTAGAGCTACATATTAGCTAGGTTATTCTATTGAAATAGT  1089

seq1  ATTAGAATTC  1106
      ||||||||||
seq2  ATTAGAATTC  1099