BAC Information

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BAC

Clone NameB6Ng01-342C15
Chromosome5 (Build37)
Map Location 68,403,996 - 68,405,065
singlet/doubletsinglet
Overlap genenone
Upstream gene3732412D22Rik, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977
Downstream geneAY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342C15.bB6Ng01-342C15.g
ACCGA125326GA125327
length1,0631,048
definitionB6Ng01-342C15.b B6Ng01-342C15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaagcaccagaaggagctgggctaagaactacttcaggagaaa
cttaagataaattacataagtgcctctcggtcagggatgcactgccccct
gggggtcattctggaaactgctgcatgctgttgcttacgtggtaggtggc
tgtggttggtggtgtcattaagggaagccctgtccagggatttttaggtg
tctcatcgtatgtctggatcagctgtaatgtaaattttgttatcacacat
caatcctgtcagtttccagaacttgacttttgtttaagagttgtggagaa
gaaactgtaggatgattgggctgtctctatgggggtggaacttacagcta
tccgttttctttcagaatagtaaagggggtataaaataatcgaattataa
gggagatcatgctgtgctacagttggtacagtttaagaaagacttttaag
taaccatattttaggaatcgctgactgaattacaacctagccttgctgaa
tgaaatggttctcagaggttagagctcattcataaaatattaaatgtacc
attaaggcgattcagctccatctgcttctatgacaaggggttgctctcag
ggccatggctgctctcttgatatgagaatgtcattgaggtctttacaata
tgaatcataaagacaagtcttaaaaagccagatgagcccgcacgccatca
gagaagggttttgcctctttccatttcccataaaaggccagctgcatcac
gttctacaactgaagaacattcatgtgctcaccaggtgccagagcccaaa
aatcggaagtggagaaagatggaacaaaatatttcaccaacagaggggac
ggaggaaggaaggaggcaattagaatgggagagagagaagggaaaatatc
ccatggaaacactttgatgggggtgaaagtaaccatggaactttatgaac
tgctagtcagagagcataagaaatggatgttaatctttcaaatgtttagg
gagctcactagtctactttcatcctttggattttgagacctatgcttttc
atggcttagaaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaagggctccc
aatggaggagctagagaaagtacccaggagctaaagggatcttcacccta
taggtgacacattatgactaccagtacccctgagcctctgactctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68403996_68405065
seq2: B6Ng01-342C15.b_47_1109

seq1  GAATTCTAAAGCACCAGAAGGAGCTGGGCTAAGAACTACTTCAGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGCACCAGAAGGAGCTGGGCTAAGAACTACTTCAGGAGAAA  50

seq1  CTTAAGATAAATTACATAAGTGCCTCTCGGTCAGGGATGCACTGCCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATAAATTACATAAGTGCCTCTCGGTCAGGGATGCACTGCCCCCT  100

seq1  GGGGGTCATTCTGGAAACTGCTGCATGCTGTTGCTTACGTGGTAGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCATTCTGGAAACTGCTGCATGCTGTTGCTTACGTGGTAGGTGGC  150

seq1  TGTGGTTGGTGGTGTCATTAAGGGAAGCCCTGTCCAGGGATTTTTAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGTGGTGTCATTAAGGGAAGCCCTGTCCAGGGATTTTTAGGTG  200

seq1  TCTCATCGTATGTCTGGATCAGCTGTAATGTAAATTTTGTTATCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCGTATGTCTGGATCAGCTGTAATGTAAATTTTGTTATCACACAT  250

seq1  CAATCCTGTCAGTTTCCAGAACTTGACTTTTGTTTAAGAGTTGTGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGTCAGTTTCCAGAACTTGACTTTTGTTTAAGAGTTGTGGAGAA  300

seq1  GAAACTGTAGGATGATTGGGCTGTCTCTATGGGGGTGGAACTTACAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTAGGATGATTGGGCTGTCTCTATGGGGGTGGAACTTACAGCTA  350

seq1  TCCGTTTTCTTTCAGAATAGTAAAGGGGGTATAAAATAATCGAATTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTTCTTTCAGAATAGTAAAGGGGGTATAAAATAATCGAATTATAA  400

seq1  GGGAGATCATGCTGTGCTACAGTTGGTACAGTTTAAGAAAGACTTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATCATGCTGTGCTACAGTTGGTACAGTTTAAGAAAGACTTTTAAG  450

seq1  TAACCATATTTTAGGAATCGCTGACTGAATTACAACCTAGCCTTGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATATTTTAGGAATCGCTGACTGAATTACAACCTAGCCTTGCTGAA  500

seq1  TGAAATGGTTCTCAGAGGTTAGAGCTCATTCATAAAATATTAAATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGTTCTCAGAGGTTAGAGCTCATTCATAAAATATTAAATGTACC  550

seq1  ATTAAGGCGATTCAGCTCCATCTGCTTCTATGACAAGGGGTTGCTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCGATTCAGCTCCATCTGCTTCTATGACAAGGGGTTGCTCTCAG  600

seq1  GGCCATGGCTGCTCTCTTGATATGAGAATGTCATTGAGGTCTTTACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGCTGCTCTCTTGATATGAGAATGTCATTGAGGTCTTTACAATA  650

seq1  TGAATCATAAAGACAAGTCTTAAAAAGCCAGATGAGCCCGCACGCCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATAAAGACAAGTCTTAAAAAGCCAGATGAGCCCGCACGCCATCA  700

seq1  GAGAAGGGTTTTGCCTCTTTCCATTTCCCATAAAAGGCCAGCTGCATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTTTTGCCTCTTTCCATTTCCCATAAAAGGCCAGCTGCATCAC  750

seq1  GTTCTACAACTGAAGAACATTCATGTGCTCACCAGGTGCCAGAGCCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAACTGAAGAACATTCATGTGCTCACCAGGTGCCAGAGCCCAAA  800

seq1  AATCGGAAGTGGAGAAAGATGGAACAAAATATTTCACCAACAGAGGGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGAAGTGGAGAAAGATGGAACAAAATATTTCACCAACAGAGGGGAC  850

seq1  GGAGGAAGGAAGGAGGCAATTAGAATGGGAGAGAGAGAAGGGAAAATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGAAGGAGGCAATTAGAATGGGAGAGAGAGAAGGGAAAATATC  900

seq1  CCATGGAAACACTTTGATGGGGGGTGAAAGTAACCATGGAACTTTATGAA  950
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  CCATGGAAACACTTTGAT-GGGGGTGAAAGTAACCATGGAACTTTATG-A  948

seq1  ACTGCTAGTCAGAAGAGCATAAGAAATGGATGTTAATCTTTCAAATGTTT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGTCAG-AGAGCATAAGAAATGGATGTTAATCTTTCAAATGTTT  997

seq1  TAGGGGAGCTCACTAGTCTACTTTCATCCCTTTGGATTTTTTGACCTATG  1050
         |||||||||||||||||||||||| ||||||||||||  ||||||||
seq2  --AGGGAGCTCACTAGTCTACTTTCAT-CCTTTGGATTTTGAGACCTATG  1044

seq1  CTTTTTCATGCTTTAGAAAA  1070
      | ||||||||  ||||||||
seq2  C-TTTTCATGGCTTAGAAAA  1063