BAC Information

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BAC

Clone NameB6Ng01-342D22
Chromosome5 (Build37)
Map Location 41,483,047 - 41,575,284
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342D22.bB6Ng01-342D22.g
ACCGA125387GA125388
length1,156986
definitionB6Ng01-342D22.b B6Ng01-342D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,483,047 - 41,484,225)(41,574,377 - 41,575,284)
sequence
gaattcttttcttgcttttgcttttatttcataagtggaaagataaaagt
tactgttccttattatataataaaaattaacatattaactaattcaaatt
atacatcaagctcttttgttggtctttaaatatgttgtcacatattttat
atatcttttttatatattgtgtgattagttacctcttacttgacctaact
ttatttttagcataattttctttttatgacgttgactgcttggagcttaa
gatagtagcaaataatccaaatcccttaatattttcttttgatttgaaat
tttgtcaccattatattagaaataatttgatcagtatacattttcaaatg
aatacaagccacagaagtcataagaaagctatggattaaatattattgat
tatagtttttgttttcgaattgtccatcatttttaccatttgtctcatac
acatattggaaaactgaaacaataactcacaccaccttagggaacagaaa
gactgaaattttgtgtgattagaatagaataatttagagatatgagtctg
aaaatcttttctcatgcctttgaagtcattagcacatgtgttcgactttg
tactgtttaatatatttacagacgtaatttcatagtagagtatattaacg
gtcatttcatgataaagttttattaatgaatttcattcaatgataatttt
tctaacttgaatattggtgccttaatgttctcttttgattgaaaaatgaa
aacttgtgtttttattcatatattttttaaaaattactttgattatattt
taaaacaaattctaattgaattagtttttaacccattctagaaatgaatg
tccattgttaggatacatttaatgaccaggtttatcatgttgttttctgt
ttatgatctgtgctgtcattttgtgctcagcttcttatttctcatcacta
attatgataaaattttcatatgacttttagtttatttgtaccctatgtgt
acattgaaacggatctaataaacaaataaactatatatttgcttcatata
tcacctaaaatttatagctgcaagacagtactatgatctcatcaaatata
tttattttcaaggtactaggccattcgtaatgaaggaacccaaatcgaat
ttccca

gaattcagggtaaaggtgttaagtgaaaagggatttaaatttacagacct
aaagaaatttcaagaaaatacctaattaaaaaaaaaagaaatttcaagct
tttttgaattataaacaagaagatcatgtttggaagtagaggctagtaat
gtgagtgctgaggtggatcattggtgtggatctagcaggtacctagtcag
ccactgcaatagaagcattgccatctaaagggaagtgggctaagatagat
ggtatagaactgaggaagtgggctaagatagatggtatagaactgaggaa
gatggttcgtaggtttcataagaaaggactctagatctagatggctgtga
atagcactattcttcaagacagaagaacggtaatcccagaaggtgacttg
gaggtcaccaaggttgttttaaaacaaggaatatgggaaaccattgtctt
ctgctaacagcatattgattccacctaaaaattctggcgtggaaccacca
agggaatctctctctaaaccttgctgcaggtcaaagggaaaatatccttg
aacctttaaataatgaagtttgcctcattgggtctttacatgttggagag
tgaacattcttccttaatatattccttttttaaaatgaaaatatttattc
tataccatctcaccaccacattttggaatctcataactggttcagtttca
cagattcactaatggagaagaatttgggagcaacttatatcttgaaactt
tttttttaggtattttcctcatttacatttccagtgctatccccaaaagt
cccccataccctcccctaccccctacccacccacccactcccactttttg
gccctggcgttcccctgtactggggcatataaagtttgcacaaccaatgg
gcctctcttttccagtgatggctgactaggtcatctttggatacatatgc
agctagagtcaagagcttctggggaactggtagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41483047_41484225
seq2: B6Ng01-342D22.b_46_1201

seq1  GAATTCTTTTCTTGCTTTTGCTTTTATTTCATAAGTGGAAAGATAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTGCTTTTGCTTTTATTTCATAAGTGGAAAGATAAAAGT  50

seq1  TACTGTTCCTTATTATATAATAAAAATTAACATATTAACTAATTCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCCTTATTATATAATAAAAATTAACATATTAACTAATTCAAATT  100

seq1  ATACATCAAGCTCTTTTGTTGGTCTTTAAATATGTTGTCACATATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAAGCTCTTTTGTTGGTCTTTAAATATGTTGTCACATATTTTAT  150

seq1  ATATCTTTTTTATATATTGTGTGATTAGTTACCTCTTACTTGACCTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTTTATATATTGTGTGATTAGTTACCTCTTACTTGACCTAACT  200

seq1  TTATTTTTAGCATAATTTTCTTTTTATGACGTTGACTGCTTGGAGCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAGCATAATTTTCTTTTTATGACGTTGACTGCTTGGAGCTTAA  250

seq1  GATAGTAGCAAATAATCCAAATCCCTTAATATTTTCTTTTGATTTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAGCAAATAATCCAAATCCCTTAATATTTTCTTTTGATTTGAAAT  300

seq1  TTTGTCACCATTATATTAGAAATAATTTGATCAGTATACATTTTCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACCATTATATTAGAAATAATTTGATCAGTATACATTTTCAAATG  350

seq1  AATACAAGCCACAGAAGTCATAAGAAAGCTATGGATTAAATATTATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGCCACAGAAGTCATAAGAAAGCTATGGATTAAATATTATTGAT  400

seq1  TATAGTTTTTGTTTTCGAATTGTCCATCATTTTTACCATTTGTCTCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTTGTTTTCGAATTGTCCATCATTTTTACCATTTGTCTCATAC  450

seq1  ACATATTGGAAAACTGAAACAATAACTCACACCACCTTAGGGAACAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGGAAAACTGAAACAATAACTCACACCACCTTAGGGAACAGAAA  500

seq1  GACTGAAATTTTGTGTGATTAGAATAGAATAATTTAGAGATATGAGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATTTTGTGTGATTAGAATAGAATAATTTAGAGATATGAGTCTG  550

seq1  AAAATCTTTTCTCATGCCTTTGAAGTCATTAGCACATGTGTTCGACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTCTCATGCCTTTGAAGTCATTAGCACATGTGTTCGACTTTG  600

seq1  TACTGTTTAATATATTTACAGACGTAATTTCATAGTAGAGTATATTAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTAATATATTTACAGACGTAATTTCATAGTAGAGTATATTAACG  650

seq1  GTCATTTCATGATAAAGTTTTATTAATGAATTTCATTCAATGATAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCATGATAAAGTTTTATTAATGAATTTCATTCAATGATAATTTT  700

seq1  TCTAACTTGAATATTGGTGCCTTAATGTTCTCTTTTGATTGAAAAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGAATATTGGTGCCTTAATGTTCTCTTTTGATTGAAAAATGAA  750

seq1  AACTTGTGTTTTTATTCATATATTTTTTAAAAATTACTTTGATTATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTTTTTATTCATATATTTTTTAAAAATTACTTTGATTATATTT  800

seq1  TAAAACAAATTCTAATTGAATTAGTTTTTAACCCATTCTAGAAATGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAATTCTAATTGAATTAGTTTTTAACCCATTCTAGAAATGAATG  850

seq1  TCCATTGTTAGGATACATTTAATGACCAGGTTTATCATGTTGTTTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTAGGATACATTTAATGACCAGGTTTATCATGTTGTTTTCTGT  900

seq1  TTATGATCTGTGCTGTCATTTTGTGCTCAGCTTCTTATTTCTCATCACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTATGATCTGTGCTGTCATTTTGTGCTCAGCTTCTTATTTCTCATCAC--  948

seq1  AAATTATGAATAAAATTTTCATATGACTTTTAGTTTAATTTGTACCCTAT  1000
       ||||||| ||||||||||||||||||||||||||| |||||||||||| 
seq2  TAATTATG-ATAAAATTTTCATATGACTTTTAGTTT-ATTTGTACCCTA-  995

seq1  TGTGTACATTGAAACGGATCTAATAAAACAAATAAAACCTTTATATTATT  1050
      |||||||||||||||||||||||| |||||||||||  || ||||    |
seq2  TGTGTACATTGAAACGGATCTAAT-AAACAAATAAA--CTATATA----T  1038

seq1  TTGTTTTCAATTTATAATCACCTAAAAATTTATAGGCTGTGAAGACAGTT  1100
      |||  ||||   ||| ||||||| |||||||||| ||||  ||||||| |
seq2  TTG-CTTCA---TAT-ATCACCT-AAAATTTATA-GCTG-CAAGACAG-T  1079

seq1  ACTATGGATTCTCATCAAATATATTTA-TTTCAAAGTACTAGCCATTTGG  1149
      ||||||   |||||||||||||||||| |||||| ||||||| |  || |
seq2  ACTATG--ATCTCATCAAATATATTTATTTTCAAGGTACTAGGCCATTCG  1127

seq1  GAATGAAAGGAACACAATCAAAATTTCCCA  1179
       |||| ||||||| |||    |||||||||
seq2  TAATG-AAGGAACCCAAATCGAATTTCCCA  1156


seq1: chr5_41574377_41575284
seq2: B6Ng01-342D22.g_66_975 (reverse)

seq1  AAAGAGAGGCCCATTGGTTGTGCAAACTTTATATGCCCCAGTACAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTGGTTGTGCAAACTTTATATGCCCCAGTACAGGGGA  50

seq1  ACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTGGGTAGGGGGTAGGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTGGGTAGGGGGTAGGGGAG  100

seq1  GGTATGGGGGACTTTT-GGGATAGCACTGGAAATGTAAATGAGGAAAATA  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTATGGGGGACTTTTGGGGATAGCACTGGAAATGTAAATGAGGAAAATA  150

seq1  CCT-AAAAAAAAGTTTCAAGATATAAGTTGCTCCCAAATTCTTCTCCATT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAAAAAGTTTCAAGATATAAGTTGCTCCCAAATTCTTCTCCATT  200

seq1  AGTGAATCTGTGAAACTGAACCAGTTATGAGATTCCAAAATGTGGTGGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCTGTGAAACTGAACCAGTTATGAGATTCCAAAATGTGGTGGTG  250

seq1  AGATGGTATAGAATAAATATTTTCATTTTAAAAAAGGAATATATTAAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTATAGAATAAATATTTTCATTTTAAAAAAGGAATATATTAAGGA  300

seq1  AGAATGTTCACTCTCCAACATGTAAAGACCCAATGAGGCAAACTTCATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCACTCTCCAACATGTAAAGACCCAATGAGGCAAACTTCATTA  350

seq1  TTTAAAGGTTCAAGGATATTTTCCCTTTGACCTGCAGCAAGGTTTAGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTTCAAGGATATTTTCCCTTTGACCTGCAGCAAGGTTTAGAGA  400

seq1  GAGATTCCCTTGGTGGTTCCACGCCAGAATTTTTAGGTGGAATCAATATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCCTTGGTGGTTCCACGCCAGAATTTTTAGGTGGAATCAATATG  450

seq1  CTGTTAGCAGAAGACAATGGTTTCCCATATTCCTTGTTTTAAAACAACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCAGAAGACAATGGTTTCCCATATTCCTTGTTTTAAAACAACCT  500

seq1  TGGTGACCTCCAAGTCACCTTCTGGGATTACCGTTCTTCTGTCTTGAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCTCCAAGTCACCTTCTGGGATTACCGTTCTTCTGTCTTGAAGA  550

seq1  ATAGTGCTATTCACAGCCATCTAGATCTAGAGTCCTTTCTTATGAAACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTATTCACAGCCATCTAGATCTAGAGTCCTTTCTTATGAAACCT  600

seq1  ACGAACCATCTTCCTCAGTTCTATACCATCTATCTTAGCCCACTTCCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCATCTTCCTCAGTTCTATACCATCTATCTTAGCCCACTTCCTCA  650

seq1  GTTCTATACCATCTATCTTAGCCCACTTCCCTTTAGATGGCAATGCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATACCATCTATCTTAGCCCACTTCCCTTTAGATGGCAATGCTTCT  700

seq1  ATTGCAGTGGCTGACTAGGTACCTGCTAGATCCACACCAATGATCCACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGGCTGACTAGGTACCTGCTAGATCCACACCAATGATCCACCT  750

seq1  CAGCACTCACATTACTAGCCTCTACTTCCAAACATGATCTTCTTGTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCACATTACTAGCCTCTACTTCCAAACATGATCTTCTTGTTTAT  800

seq1  AATTCAAAAAAGCTTGAAATTTCTTTTTTTTTTAATTAGGTATTTTCTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAAAAGCTTGAAATTTCTTTTTTTTTTAATTAGGTATTTTCTTG  850

seq1  AAATTTCTTTAGGTCTGTAAATTTAAATCCCTTTTCACTTAACACCTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTTAGGTCTGTAAATTTAAATCCCTTTTCACTTAACACCTTTA  900

seq1  CCCTGAATTC  908
      ||||||||||
seq2  CCCTGAATTC  910


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