BAC Information

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BAC

Clone NameB6Ng01-342H01
Chromosome5 (Build37)
Map Location 147,863,151 - 147,968,984
singlet/doubletdoublet
Overlap geneLnx2, Rpo1-3
Upstream geneLOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3
Downstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H01.bB6Ng01-342H01.g
ACCGA125526GA125527
length1,0781,168
definitionB6Ng01-342H01.b B6Ng01-342H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,967,910 - 147,968,984)(147,863,151 - 147,864,172)
sequence
gaattctagtcttcaaacagaagcaggaagcagagagagcaaattgaagt
aaacacagctttttactctcaaaacccacctccagtggcatatttacctc
gacaaggctgttgggcttctcagagtgtccccaactgggaaccaagtatt
caaatacccgagcctatggaggggacctgtctcatttgaaatcaccagag
ctagtaaggcactgtatctgacccagtgttgtccacttgctttacaatgt
ctctttgggttgagggcatagctcagtgggaacaatgtttctttgggctg
agggcatagctcagtgggagcaaagtttccttgggctgagcacatagctc
agtggtagagcacctgcctagcaggtttgaagcctttgacttctaaccta
agaactgcaaaagaaatttccgggcttttgaagatgtctggagtgttagg
aaccaggtccaccctcacccaccttcagcaactcagttccagcagccaca
tcgtcacctaccgccaaatgccatacatttctgttgtcaccacatatata
gccttatatacacatatatacatacacatctatggatttacttcattttg
tgctccccctacaacctcactcccccacccccctacaccccccaacccac
ccccgcgcaataaatctctcccctgagatctgttgcatggagtggctttg
tggcattccttggccccaacccaccaaaacccttacaaggagtgcatttg
caaggacccccaaccccttaccacatgcagatcctagcacttcctcctcc
tccatgcaatctggaatctaggagccacaccctttgtttacatatagttt
aagttaccactaaccaaaccttcctgaaatgctctctccctctgaactcc
cggcacacccagtgagactgggttctgatctactgcatttttattttgtg
gccaccagagaagtcacaaagagtagtgacttcttccctcatagacttta
ttcccctctccctcattcttagtttcaaagataattagcttcttgttcct
tatgttgcaattctccttacaggtggga
gaattccacgttgctaaatccactgcttaattcccagtcctaatcttatt
tgactggccttgtctgcaagactcgacacaactgactatgtcctcctgca
tgaaacccttgcgcctggtctctccgagtcgcatgctcctcatttctctc
cagtcgctcttcctggctttctctttacctctaaggacttctcactggga
agcatcccaacgggggacaaagcttatttatctactctcctgccggggac
ttttccagtctaatgctcattcacgcagtttgtacacccggcccctgaat
tccagtcagattcactcgttggtgagctgtctagccagcgagcgtcagcg
tcccaggtctaaacctgagcaccacccttaaacctgctctttcaagtctc
tgtcactcaatttctacctttccagttgcgtagggcaagaatcctggagt
cacctcgacttttctgccatcggcagatcccatcctcctcagcagcaaat
ggtgctgaaattgccttacgtgtatttgaaattgagtcacttctcgtcgt
tgcagctctgtccagcgcggctccctagcctcatcgctgcttggatggct
gcttcaggaggcctctctcggtttctacctttacccttcactttgttttt
gacacagacagatctgttagaagtaaaagccgacagtgtcgatcccttca
aggccgtgtggaggactttctgcttcctgtttttattgcatatgggaaag
atctgtttttccaacaaagagggcaggggaggcgagcagcataaagaccc
tgagcgcctgcccacagaggaaaagaaacaaaggaaaatgaggacaccgg
ttgtgaaactactcctctgacaacggcattaaaatcccttagcctccctg
tgacacagcagacactcactagcttagcttactgtgcgggaatctggggc
gtccccttgagtgccgtgtgtggatgcatgctggctggtttaagtctcct
ggggtgcactctgcttatgcatagtggaagatcataatcatgcagagcat
gatggacattgtgatcatgagagcttgaccaggggaaccacaagcttcac
ctctactgtgcgaccaccagggaactaggtctactctgggggaagctctc
aaagagtggattcgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147967910_147968984
seq2: B6Ng01-342H01.b_48_1125 (reverse)

seq1  TCCCA-CTGTAA-GAGAA-TGCCACATAAGGAACAAG-AGCTATTTATCT  46
      ||||| |||||| ||||| ||| |||||||||||||| ||||| ||||||
seq2  TCCCACCTGTAAGGAGAATTGCAACATAAGGAACAAGAAGCTAATTATCT  50

seq1  TTGAAACTAAGAATGAGGGGAGAGGGG-ATAAAGTCTATGAGGGGGAAGA  95
      |||||||||||||||| |||||||||| |||||||||||||  |||||||
seq2  TTGAAACTAAGAATGA-GGGAGAGGGGAATAAAGTCTATGA--GGGAAGA  97

seq1  AGTCACTACTCTTTGTGAC-TCTCTGGTTGGCCCACAAATAAAATGCAGT  144
      ||||||||||||||||||| |||||||| | | || ||  ||||||||||
seq2  AGTCACTACTCTTTGTGACTTCTCTGGTGGCCACAAAATAAAAATGCAGT  147

seq1  AGATCAGAACCCAGTCTCACTGGGTGTTGCCGGGAGTTCAGAGGGAGAGA  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATCAGAACCCAGTCTCACTGGGTG-TGCCGGGAGTTCAGAGGGAGAGA  196

seq1  GCATTTCAGGAAGGTTTGGTTAGTGGTAACTT-AACTATATGTAAACAAA  243
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATTTCAGGAAGGTTTGGTTAGTGGTAACTTAAACTATATGTAAACAAA  246

seq1  GGGTGTGGCTCCTAGATTCCAGATTGCATGGAGGAGGAGGAAGTGCTAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCTCCTAGATTCCAGATTGCATGGAGGAGGAGGAAGTGCTAGG  296

seq1  ATCTGCATGTGGTAAGGGGTTGGGGGTCCTTGCAAATGCACTCCTTGTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGTGGTAAGGGGTTGGGGGTCCTTGCAAATGCACTCCTTGTAA  346

seq1  GGGTTTTGGTGGGTTGGGGCCAAGGAATGCCACAAAGCCACTCCATGCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGGTGGGTTGGGGCCAAGGAATGCCACAAAGCCACTCCATGCAA  396

seq1  CAGATCTCAGGGGAGAGATTTATTGCGCGGGGGTGGGTTGGGGGGGGTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGATCTCAGGGGAGAGATTTATTGCGCGGGGGTGGGTTGGGGGGTGTAG  446

seq1  GGGGGTGGGGGAGTGAGGTTGTAGGGGGAGCACAAAATGAAGTAAATCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGGAGTGAGGTTGTAGGGGGAGCACAAAATGAAGTAAATCCA  496

seq1  TAGATGTGTATGTATATATGTGTATATAAGGCTATATATGTGGTGACAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGTATGTATATATGTGTATATAAGGCTATATATGTGGTGACAAC  546

seq1  AGAAATGTATGGCATTTGGCGGTAGGTGACGATGTGGCTGCTGGAACTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTATGGCATTTGGCGGTAGGTGACGATGTGGCTGCTGGAACTGA  596

seq1  GTTGCTGAAGGTGGGTGAGGGTGGACCTGGTTCCTAACACTCCAGACATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAAGGTGGGTGAGGGTGGACCTGGTTCCTAACACTCCAGACATC  646

seq1  TTCAAAAGCCCGGAAATTTCTTTTGCAGTTCTTAGGTTAGAAGTCAAAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGCCCGGAAATTTCTTTTGCAGTTCTTAGGTTAGAAGTCAAAGG  696

seq1  CTTCAAACCTGCTAGGCAGGTGCTCTACCACTGAGCTATGTGCTCAGCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCTGCTAGGCAGGTGCTCTACCACTGAGCTATGTGCTCAGCCC  746

seq1  AAGGAAACTTTGCTCCCACTGAGCTATGCCCTCAGCCCAAAGAAACATTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTTTGCTCCCACTGAGCTATGCCCTCAGCCCAAAGAAACATTG  796

seq1  TTCCCACTGAGCTATGCCCTCAACCCAAAGAGACATTGTAAAGCAAGTGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGAGCTATGCCCTCAACCCAAAGAGACATTGTAAAGCAAGTGG  846

seq1  ACAACACTGGGTCAGATACAGTGCCTTACTAGCTCTGGTGATTTCAAATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTGGGTCAGATACAGTGCCTTACTAGCTCTGGTGATTTCAAATG  896

seq1  AGACAGGTCCCCTCCATAGGCTCGGGTATTTGAATACTTGGTTCCCAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTCCCCTCCATAGGCTCGGGTATTTGAATACTTGGTTCCCAGTT  946

seq1  GGGGACACTCTGAGAAGCCCAACAGCCTTGTCGAGGTAAATATGCCACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACTCTGAGAAGCCCAACAGCCTTGTCGAGGTAAATATGCCACTG  996

seq1  GAGGTGGGTTTTGAGAGTAAAAAGCTGTGTTTACTTCAATTTGCTCTCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGTTTTGAGAGTAAAAAGCTGTGTTTACTTCAATTTGCTCTCTC  1046

seq1  TGCTTCCTGCTTCTGTTTGAAGACTAGAATTC  1075
      ||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGCTTCTGTTTGAAGACTAGAATTC  1078

seq1: chr5_147863151_147864172
seq2: B6Ng01-342H01.g_225_1234

seq1  CTTCCTGGCTTTCTCTTTACCTCTAAGGACTTCTCACTGGGAAGCATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTTTCTCTTTACCTCTAAGGACTTCTCACTGGGAAGCATCCC  50

seq1  AACGGGGGACAAAGCTTATTTATCTACTCTCCTGCCGGGGACTTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGGGACAAAGCTTATTTATCTACTCTCCTGCCGGGGACTTTTCCAG  100

seq1  TCTAATGCTCATTCACGCAGTTTGTACACCCGGCCCCTGAATTCCAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCTCATTCACGCAGTTTGTACACCCGGCCCCTGAATTCCAGTCA  150

seq1  GATTCACTCGTTGGTGAGCTGTCTAGCCAGCGAGCGTCAGCGTCCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTCGTTGGTGAGCTGTCTAGCCAGCGAGCGTCAGCGTCCCAGGT  200

seq1  CTAAACCTGAGCACCACCCTTAAACCTGCTCTTTCAAGTCTCTGTCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTGAGCACCACCCTTAAACCTGCTCTTTCAAGTCTCTGTCACTC  250

seq1  AATTTCTACCTTTCCAGTTGCGTAGGGCAAGAATCCTGGAGTCACCTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTACCTTTCCAGTTGCGTAGGGCAAGAATCCTGGAGTCACCTCGA  300

seq1  CTTTTCTGCCATCGGCAGATCCCATCCTCCTCAGCAGCAAATGGTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGCCATCGGCAGATCCCATCCTCCTCAGCAGCAAATGGTGCTGA  350

seq1  AATTGCCTTACGTGTATTTGAAATTGAGTCACTTCTCGTCGTTGCAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTTACGTGTATTTGAAATTGAGTCACTTCTCGTCGTTGCAGCTC  400

seq1  TGTCCAGCGCGGCTCCCTAGCCTCATCGCTGCTTGGATGGCTGCTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCGCGGCTCCCTAGCCTCATCGCTGCTTGGATGGCTGCTTCAGG  450

seq1  AGGCCTCTCTCGGTTTCTACCTTTACCCTTCACTTTGTTTTTGACACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTCTCGGTTTCTACCTTTACCCTTCACTTTGTTTTTGACACAGA  500

seq1  CAGATCTGTTAGAAGTAAAAGCCGACAGTGTCGATCCCTTCAAGGCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGTTAGAAGTAAAAGCCGACAGTGTCGATCCCTTCAAGGCCGTG  550

seq1  TGGAGGACTTTCTGCTTCCTGTTTTTATTGCATATGGGAAAGATCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACTTTCTGCTTCCTGTTTTTATTGCATATGGGAAAGATCTGTTT  600

seq1  TTCCAACAAAGAGGGCAGGGGAGGCGAGCAGCATAAAGACCCTGAGCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAAAGAGGGCAGGGGAGGCGAGCAGCATAAAGACCCTGAGCGCC  650

seq1  TGCCCACAGAGGAAAAGAAACAAAGGAAAATGAGGACACCGGTTGTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCCACAGAGGAAAAGAAACAAAGGAAAATGAGGACACCGGTTGTG-AA  699

seq1  ACTACTCCTCTGACAACGGCATTAAAATCCCTTAGCCTCCCTGTGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCTCTGACAACGGCATTAAAATCCCTTAGCCTCCCTGTGACACA  749

seq1  GCAGACACTCACTAGCTTAGCTTACTGTGCGGGAATCTGGGGCGTCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACTCACTAGCTTAGCTTACTGTGCGGGAATCTGGGGCGTCCCCT  799

seq1  TGAGTGCCGTGTGTGGATGCATGCTGGCTGGTTTAAGTCTCCTGGGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCGTGTGTGGATGCATGCTGGCTGGTTTAAGTCTCCTGGGGTGC  849

seq1  ACTCTGCCTTATGCAATAGT-GAAGATCATATTCCATGCAGAGGCATGAT  899
      |||||| ||||||| ||||| |||||||||| | |||||||| |||||||
seq2  ACTCTG-CTTATGC-ATAGTGGAAGATCATAAT-CATGCAGA-GCATGAT  895

seq1  GGGACA-TGTGATACATGAAGAAGCTTGACCAGGGGGAACAC-AGCTCCA  947
       ||||| |||||| |||||   |||||||||||||| | ||| |||| ||
seq2  -GGACATTGTGAT-CATGA--GAGCTTGACCAGGGGAACCACAAGCTTCA  941

seq1  CCTCTACCTGTGCGACCACCAGGGGACTAGGTCCCTACCCTCCTGGGGAA  997
      |||||| ||||||||||||||||| |||||||  |||  |||  ||||||
seq2  CCTCTA-CTGTGCGACCACCAGGGAACTAGGT--CTA--CTCTGGGGGAA  986

seq1  GCTCTCAAAGGAGTGGATTCCGGGA  1022
      ||||||||| |||||||||| ||||
seq2  GCTCTCAAA-GAGTGGATTCGGGGA  1010