BAC Information

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BAC

Clone NameB6Ng01-342H05
Chromosome5 (Build37)
Map Location 54,918,837 - 54,919,982
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H05.bB6Ng01-342H05.g
ACCGA125534GA125535
length7251,151
definitionB6Ng01-342H05.b B6Ng01-342H05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatcacctgtttggttgtgttttcctctagctctttaagggatt
tttgtgtttcctctttaaggacttctacctctttagcactgctctcctgt
atttctttaagtgagttattaatgcccttcttgatgtcttctaccatcat
cacgagatatgattttaattccgagtcttgtttttggggtgtgttggggt
atccaggagaggctgaggtgagagtgctgggttctgatgatggtgagtgg
tcttggtttctgttagtaagattcttacatttgccttttgccatcttgta
atcactggagttagttgttatagttgtctctggttggagcttgttcctcc
tgtgattctgtttgcctttgttagcagtcctgggagtccagctctctcct
gaatctcagtggtcagagtactctctgcaggcaagctctcctctttcagg
gaaggtgcacagatatctggcattcggacctgcctcatggctgcagatgg
aggcctgaaacagggcctgtcccagaagatgtgttgcctctgcagtctgc
acactcacctgcacagactggtctccaagggacccgggacacaagatggc
tctctcacctgctctggtggtcagagctctcccaggggggggggggcggg
acggacacctctcctctggtggggaaggtgattggttgtctttagcctga
aacctgagtctgatttacaaactgg

gaattctactctctaaagtcactttctcttgatctggctggaaaccctta
tcacaggtacagaagagacttctatcattggaggttttcctgtaaattaa
acaaagattagaaaaatgaaaatatcactataaacaaagtatttttcaat
ggaatgataaggtatgcaatgtaagaacaagtaataagatatttgttcta
tgatggttatcccagaatagaacaaaacataaattctatatcaggaaagc
aattattcagactatcaatatcctattgtaaaacttcattcacaaaggtg
ggatgctactctgcttcatttacatttcatgtaaatccaacaaaaattcc
aatggggattcaagaagctttaaatcctagtctcaaattatttttttaac
acaaaatttaaaagtgacttgatggtatctgagcaacagtttaaaaaaaa
ctagtagaaatgaaaagacactaccagttattagaatttttgaatattta
tttttgtataaatgtatctgcatgtacatatatatatatatatatatata
tatatatatatatatatatatatatatatatatactctgtatgtgcttgg
ttcttacaaagaccaaaaaggtatatgggattccctgttactggagtttc
tggttattgtgaaccaccaagtgagtggttctgggaactgaactttggcc
tcctgcaaaaatgataattgctcttaattgctgaaccatctctccagccc
ttggatatcaaaattttctacaaagtcataacaattagcaaagttatatt
catacaagtgtagaatgggttggcaaatcctaaaaatctgacctctgcac
acagaactaatttggtatataatagagtttacattacagatctattatat
agcaataagatcagcccacaggtgaacggtgtctttaatattgctaaatt
ttacttagtgagaagagtttgagagaaagttagatcaataaatgagaacc
attatccgataagtctttatcagaacaattttataaatcactagccttct
gaagataagaaaataaagacagcctgggtccaagaagccttataaggtat
ccgaaactcagattgactctcttctatgaatgaaaatcattttactgaat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54918837_54919982
seq2: B6Ng01-342H05.g_67_1217 (reverse)

seq1  CATTCAGT-AAATGATTTTCATTCATAGAAGAG-TTAATTCTGAGTTTCT  48
      |||||||| ||||||||||||||||||||||||  | | |||||||||| 
seq2  CATTCAGTAAAATGATTTTCATTCATAGAAGAGAGTCAATCTGAGTTTC-  49

seq1  GCATACTTTATAAGGCTTCCTTTGACCCAGGCTGTC-TTAATTTCTAATC  97
      | |||| ||||||||||| ||| ||||||||||||| ||| ||||| |||
seq2  GGATACCTTATAAGGCTT-CTTGGACCCAGGCTGTCTTTATTTTCTTATC  98

seq1  TTCAGAAGGCTAGTGATTTATAAAATTG-TCTGATAAAGACTTTATCTGA  146
      |||||||||||||||||||||||||||| |||||||||||| ||||| ||
seq2  TTCAGAAGGCTAGTGATTTATAAAATTGTTCTGATAAAGAC-TTATCGGA  147

seq1  TTATTGGTTCTCATTTTATTTGATCTTACTTTTCTCTCAAACTCTTCTTC  196
       || ||||||||||||   ||||||| || ||||||||||||||||| ||
seq2  -TAATGGTTCTCATTT--ATTGATCTAAC-TTTCTCTCAAACTCTTC-TC  192

seq1  ACTAGGTAAAAATTTAGCAATTATTAAAGACACCGTTCACTTGTGGGCTG  246
      |||| || |||||||||||| ||||||||||||||||||| |||||||||
seq2  ACTAAGT-AAAATTTAGCAA-TATTAAAGACACCGTTCACCTGTGGGCTG  240

seq1  ATCTTATTTGCTATATAATGGATCTGTAATGTAAACTCTATTATATACC-  295
      |||||| |||||||||||| ||||||||||||||||||||||||||||| 
seq2  ATCTTA-TTGCTATATAATAGATCTGTAATGTAAACTCTATTATATACCA  289

seq1  AATTAG-TCTGTGTGCAGAGGTCAGA-TTTTAGGA-TTGCCAACCCATTC  342
      |||||| ||||||||||||||||||| |||||||| ||||||||||||||
seq2  AATTAGTTCTGTGTGCAGAGGTCAGATTTTTAGGATTTGCCAACCCATTC  339

seq1  TACACTTGTATGAATATAAC-TTGCTAATTGTTATGACTTTGTAG-AAAT  390
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TACACTTGTATGAATATAACTTTGCTAATTGTTATGACTTTGTAGAAAAT  389

seq1  TTTGATATCCAAGGGCTGGAGAGATGGTTCAGCAATTAAGAGCAATTATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATCCAAGGGCTGGAGAGATGGTTCAGCAATTAAGAGCAATTATC  439

seq1  ATTTTTGCAGGAGGCCAAAGTTCAGTTCCCAGAACCACTCACTTGGTGGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCAGGAGGCCAAAGTTCAGTTCCCAGAACCACTCACTTGGTGGT  489

seq1  TCACAATAACCAGAAACTCCAGTAACAGGGAATCCCATATACCTTTTTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAACCAGAAACTCCAGTAACAGGGAATCCCATATACCTTTTTGG  539

seq1  TCTTTGTAAGAACCAAGCACATACAGAG------TATATATATATATATA  584
      ||||||||||||||||||||||||||||      ||||||||||||||||
seq2  TCTTTGTAAGAACCAAGCACATACAGAGTATATATATATATATATATATA  589

seq1  TATATATATATATATATATATATATATATATATATGTACATGCAGATACA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATGTACATGCAGATACA  639

seq1  TTTATACAAAAATAAATATTCAAAAATTCTAATAACTGGTAGTGTCTTTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAAAAATAAATATTCAAAAATTCTAATAACTGGTAGTGTCTTTT  689

seq1  CATTTCTACTAGTTTTTTTTAAACTGTTGCTCAGATACCATCAAGTCACT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTACTAGTTTTTTTTAAACTGTTGCTCAGATACCATCAAGTCACT  739

seq1  TTTAAATTTTGTGTTAAAAAAATAATTTGAGACTAGGATTTAAAGCTTCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTGTGTTAAAAAAATAATTTGAGACTAGGATTTAAAGCTTCT  789

seq1  TGAATCCCCATTGGAATTTTTGTTGGATTTACATGAAATGTAAATGAAGC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCCCATTGGAATTTTTGTTGGATTTACATGAAATGTAAATGAAGC  839

seq1  AGAGTAGCATCCCACCTTTGTGAATGAAGTTTTACAATAGGATATTGATA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCATCCCACCTTTGTGAATGAAGTTTTACAATAGGATATTGATA  889

seq1  GTCTGAATAATTGCTTTCCTGATATAGAATTTATGTTTTGTTCTATTCTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATAATTGCTTTCCTGATATAGAATTTATGTTTTGTTCTATTCTG  939

seq1  GGATAACCATCATAGAACAAATATCTTATTACTTGTTCTTACATTGCATA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCATCATAGAACAAATATCTTATTACTTGTTCTTACATTGCATA  989

seq1  CCTTATCATTCCATTGAAAAATACTTTGTTTATAGTGATATTTTCATTTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCATTCCATTGAAAAATACTTTGTTTATAGTGATATTTTCATTTT  1039

seq1  TCTAATCTTTGTTTAATTTACAGGAAAACCTCCAATGATAGAAGTCTCTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTTGTTTAATTTACAGGAAAACCTCCAATGATAGAAGTCTCTT  1089

seq1  CTGTACCTGTGATAAGGGTTTCCAGCCAGATCAAGAGAAAGTGACTTTAG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTGTGATAAGGGTTTCCAGCCAGATCAAGAGAAAGTGACTTTAG  1139

seq1  AGAGTAGAATTC  1146
      ||||||||||||
seq2  AGAGTAGAATTC  1151


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