BAC Information

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BAC

Clone NameB6Ng01-343B11
Chromosome5 (Build37)
Map Location 7,829,781 - 7,830,954
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343B11.bB6Ng01-343B11.g
ACCGA125964GA125965
length1,1761,172
definitionB6Ng01-343B11.b B6Ng01-343B11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctgccctgagaaactttccattgatgagttgtggtttacagg
gaaaaccccataaacaaccgctgcatatgcctccaatcaacttgtgtatg
agacttgaacaagctgcctgtgtctacaactgcaaacagaatggcttcta
ctcactgaggaactgatgaggcccctcggtcaacatcaccagagtgacac
tgtgttctctgcactctggtccaaatacaattctgttctcaagcctgaca
atcatttttgtgcatccaaacaagtccttttctgagtttctagcaaattg
tatggaatatttcactgccgatttttcattgcttacagtaaaatcattag
gcagcaagtattatctattgatttctactttgcctccacatgttctgcaa
aacaacggctttctcctcttcccttgctcagagggaacagtttctatcct
cagctaaccacaatgttcagggtctttgttatccttaaatcagcaggggt
cctcttcagattttgacagtatcaaagaattttttacccttctttcaagt
gttacttcccatttagcatcagaattcaaaatacctttttcataatgcaa
attctgagcctttataagtgacatcaccatccaaccctttgcccagaata
cccacccctgtcttgcagcccaatattttgtttgtttgtttgtttgtttt
ttaattggatattttctttatttacatttcaaatgttatcctccaccccc
accccggaaaccccttatcccatttctcttcccccatgcttctatatggg
tattcccccacccacccaaaacactcctactgccccaccctcaagttccc
ctacactggagccttgagccttcacagggccaatgattttgcctcccatt
gatgccagacaaaaccatcctcggctacatatgtggcaggagtcacagtt
ccctccatgtgcacttcttagttggttttttagtccctgggagctctgag
ggtctgatgggttgatattgttcttcctatggggtgcaaaccccttcagc
tctttcagtcctttctcttactctcattgaggactccatgcctcagtcta
atggttgcctgaaaacatcaccctctgtatttgtcagctctctggcagaa
gtccctctcagagaacagcttatatc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaattaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
attgatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagtcccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgccccttcttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcatgtaatggatggatcatagggctccca
atggaggaaatagagaaagcacccaaggactaaagggaactgcaccctat
aggtggacacatatgactaccagtaccccgagctcttgtttctagctgca
tatgtatcaaagatgtctagtagcatcactgaagagagtcaatggaactg
ccaaccttatatggcccagtaatgaaccaggccacagggatgaaggcagg
gaatggggggaagtctcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7829781_7830954
seq2: B6Ng01-343B11.b_47_1222

seq1  GAATTCACCTGCCCTGAGAAACTTTCCATTGATGAGTTGTGGTTTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCCCTGAGAAACTTTCCATTGATGAGTTGTGGTTTACAGG  50

seq1  GAAAACCCCATAAACAACCGCTGCATATGCCTCCAATCAACTTGTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCCATAAACAACCGCTGCATATGCCTCCAATCAACTTGTGTATG  100

seq1  AGACTTGAACAAGCTGCCTGTGTCTACAACTGCAAACAGAATGGCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAACAAGCTGCCTGTGTCTACAACTGCAAACAGAATGGCTTCTA  150

seq1  CTCACTGAGGAACTGATGAGGCCCCTCGGTCAACATCACCAGAGTGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGGAACTGATGAGGCCCCTCGGTCAACATCACCAGAGTGACAC  200

seq1  TGTGTTCTCTGCACTCTGGTCCAAATACAATTCTGTTCTCAAGCCTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCTGCACTCTGGTCCAAATACAATTCTGTTCTCAAGCCTGACA  250

seq1  ATCATTTTTGTGCATCCAAACAAGTCCTTTTCTGAGTTTCTAGCAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTGTGCATCCAAACAAGTCCTTTTCTGAGTTTCTAGCAAATTG  300

seq1  TATGGAATATTTCACTGCCGATTTTTCATTGCTTACAGTAAAATCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATATTTCACTGCCGATTTTTCATTGCTTACAGTAAAATCATTAG  350

seq1  GCAGCAAGTATTATCTATTGATTTCTACTTTGCCTCCACATGTTCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTATTATCTATTGATTTCTACTTTGCCTCCACATGTTCTGCAA  400

seq1  AACAACGGCTTTCTCCTCTTCCCTTGCTCAGAGGGAACAGTTTCTATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGGCTTTCTCCTCTTCCCTTGCTCAGAGGGAACAGTTTCTATCCT  450

seq1  CAGCTAACCACAATGTTCAGGGTCTTTGTTATCCTTAAATCAGCAGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACCACAATGTTCAGGGTCTTTGTTATCCTTAAATCAGCAGGGGT  500

seq1  CCTCTTCAGATTTTGACAGTATCAAAGAATTTTTTACCCTTCTTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAGATTTTGACAGTATCAAAGAATTTTTTACCCTTCTTTCAAGT  550

seq1  GTTACTTCCCATTTAGCATCAGAATTCAAAATACCTTTTTCATAATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCCCATTTAGCATCAGAATTCAAAATACCTTTTTCATAATGCAA  600

seq1  ATTCTGAGCCTTTATAAGTGACATCACCATCCAACCCTTTGCCCAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGCCTTTATAAGTGACATCACCATCCAACCCTTTGCCCAGAATA  650

seq1  CCCACCCCTGTCTTGCAGCCCAATATTTTGTTTGTTTGTTTGTTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTGTCTTGCAGCCCAATATTTTGTTTGTTTGTTTGTTTGTTTT  700

seq1  TTAATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCTCCACCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCTCCACCCCC  750

seq1  ACCCCGGAAACCCCTTATCCCATTTCTCTTCCCCCATGCTTCTATATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGAAACCCCTTATCCCATTTCTCTTCCCCCATGCTTCTATATGGG  800

seq1  TATTCCCCCACCCACCCAAAACACTCCTACTGCCCCACCCTCAAGTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCCACCCACCCAAAACACTCCTACTGCCCCACCCTCAAGTTCCC  850

seq1  CTACACTGGAGCCTTGAGCCTTCACAGGGCCAATGATTTTGCCTCCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGGAGCCTTGAGCCTTCACAGGGCCAATGATTTTGCCTCCCATT  900

seq1  GATGCCAGACAAAACCATCCTCGGCTACATATGTGGCAGGAGTCACAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGACAAAACCATCCTCGGCTACATATGTGGCAGGAGTCACAGTT  950

seq1  CCCTCCATGTGCACTTCTTAGTTGGTTTTTTAGTCCCTGGGAGCTCTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCTCCATGTGCACTTCTTAGTTGGTTTTTTAGTCCCTGGGAGCTCTGA-  999

seq1  GGGTCTGATTGGTTGATATTGTTCTTCCTATGGGGTTGCAAACCCCTTCA  1050
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  GGGTCTGATGGGTTGATATTGTTCTTCCTATGGGG-TGCAAACCCCTTCA  1048

seq1  GCTCTTTCAGTCCTTTCTCTAACTCCTTCATTGAGGACTCCATG-CTCAG  1099
      |||||||||||||||||||| ||||  ||||||||||||||||| |||||
seq2  GCTCTTTCAGTCCTTTCTCTTACTC--TCATTGAGGACTCCATGCCTCAG  1096

seq1  TCTAATGGTTGGCTGAGAGCATCCACCTCTGTATTTGTCAG-GCTCTGGC  1148
      ||||||||||| |||| | ||||  ||||||||||||||||  |||||||
seq2  TCTAATGGTTGCCTGAAAACATCACCCTCTGTATTTGTCAGCTCTCTGGC  1146

seq1  AGA---GCCTCTCAAGAG-ACAGC-TATATC  1174
      |||    |||||| |||| ||||| ||||||
seq2  AGAAGTCCCTCTC-AGAGAACAGCTTATATC  1176