BAC Information

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BAC

Clone NameB6Ng01-343E02
Chromosome5 (Build37)
Map Location 133,365,944 - 133,366,999
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343E02.bB6Ng01-343E02.g
ACCGA126080GA126081
length1,0701,205
definitionB6Ng01-343E02.b B6Ng01-343E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgatttttagaaccaaccgaagtcacttcctgggtactgggg
gagtgaatcaatggggaaagtatttgctgagcaagtgggggcctgagttt
gagtcacagcactttcaaaaaaacccaggtgtgatgatgtgtatctgtaa
tcccagagctggagaggcagacacaggaagatccctgggcacgctatcag
ccctaactacttggaaaggtccaggttagtgaaagaccctatgccaagaa
agtagatggatcctaacaaagactacttaagcttgtcctctggcctatac
aacacacacacacacatgcacatgcacgtgcacacgcgtgtgcacacaca
cacacatacacacacatatatacacaggcacacaggcacatatgcatgca
gagtcatctccaagactccctttttttttaaacatataagaaagatacag
cacaagacatagcatagtggagtccagttcaataaatgagcaattccaga
ccttagagctcttgaggaccaggagggaggcaaattcagtaaatgatgag
ccttcccttttccctgccctttactggggcatacaggacccatgggttgg
tatgtggtcctcccttctcccctggggctgttggctaccagaccactagg
acaaggggagttgaagggtttagacagcccttgagcataacagaaatgac
agacttatctctgggttcagatccagagaggcagctcagctttaatcagg
atgaatcaagggctatatagtttttgggagttgggtagggatttctagga
taggtatgtatcattagctacagcttgggggtacctgggataatgccctt
gtttgcatggagaaaccagttctaagaattccagtgccttgcctggacag
ttcttattcagtgaataggaagttgaacctgttaatctcaccaaaactac
gtgacattctgcaatagaaggagttggaagtttgggagcttcccagtaca
agtcagaagtaggagaaatctttcaggttaaaggaatctcctatttttgg
tgctcagatagcttgtccag

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagataaaatttcctaaacacatgaaactcaag
aaaaatgaagacttaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaattacccaaggagctaaagggatcttcaaccct
ataggtggacaacattatgaactaccagtacccctgagctcttgactcta
gctgcatatggtatcaaaagatggcctagttcgcatcactgaaaaaaggc
cattggacaccgcaagactggtgtgctccgtacaggacgctagtccaagg
gggggatgtgatgaggttatgcacactcatgactagctgagtagctacga
gctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_133365944_133366999
seq2: B6Ng01-343E02.b_46_1115 (reverse)

seq1  CTGGAC-AGCTATCTGAGCAC--AAAATGGGAGATTCCCTTTACCTGAAA  47
      |||||| ||||||||||||||  ||||| ||||||||| || ||||||||
seq2  CTGGACAAGCTATCTGAGCACCAAAAATAGGAGATTCCTTTAACCTGAAA  50

seq1  GATTTCTCCTAC-TCTGACCTTGT-CTGGGAAGCT-CCAAAC-TCCCACT  93
      |||||||||||| ||||| ||||| |||||||||| |||||| ||| |||
seq2  GATTTCTCCTACTTCTGA-CTTGTACTGGGAAGCTCCCAAACTTCCAACT  99

seq1  CCTTCTATTTGCAGAATGTCACGTAGTTTTGGTGAGATT-ACAGGTTCAA  142
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTCTA-TTGCAGAATGTCACGTAGTTTTGGTGAGATTAACAGGTTCAA  148

seq1  CTTCCT-TTCACCTGATAAGAACCTGTCCA-GCAA-GCACTGGAATTCTT  189
      |||||| |||||   ||||||| ||||||| |||| ||||||||||||||
seq2  CTTCCTATTCACTGAATAAGAA-CTGTCCAGGCAAGGCACTGGAATTCTT  197

seq1  AG-ACTGG-TTCTCCATGCAAACAA-GGCATTATCC--AGTA-CCCCAAG  233
      || ||||| |||||||||||||||| ||||||||||   ||| |||||||
seq2  AGAACTGGTTTCTCCATGCAAACAAGGGCATTATCCCAGGTACCCCCAAG  247

seq1  CTGTAGCTAATGATACATACCTATCCTAGAAATCCCTACCCAACTCCCAA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTAATGATACATACCTATCCTAGAAATCCCTACCCAACTCCCAA  297

seq1  AAACTATATAGCCCTTGATTCATCCTGATTAAAGCTGAGCTGCCTCTCTG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATATAGCCCTTGATTCATCCTGATTAAAGCTGAGCTGCCTCTCTG  347

seq1  GATCTGAACCCAGAGATAAGTCTGTCATTTCTGTTATGCTCAAGGGCTGT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAACCCAGAGATAAGTCTGTCATTTCTGTTATGCTCAAGGGCTGT  397

seq1  CTAAACCCTTCAACTCCCCTTGTCCTAGTGGTCTGGTAGCCAACAGCCCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCTTCAACTCCCCTTGTCCTAGTGGTCTGGTAGCCAACAGCCCC  447

seq1  AGGGGAGAAGGGAGGACCACATACCAACCCATGGGTCCTGTATGCCCCAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGGGAGGACCACATACCAACCCATGGGTCCTGTATGCCCCAG  497

seq1  TAAAGGGCAGGGAAAAGGGAAGGCTCATCATTTACTGAATTTGCCTCCCT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCAGGGAAAAGGGAAGGCTCATCATTTACTGAATTTGCCTCCCT  547

seq1  CCTGGTCCTCAAGAGCTCTAAGGTCTGGAATTGCTCATTTATTGAACTGG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCAAGAGCTCTAAGGTCTGGAATTGCTCATTTATTGAACTGG  597

seq1  ACTCCACTATGCTATGTCTTGTGCTGTATCTTTCTTATATGTTTAAAAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTATGCTATGTCTTGTGCTGTATCTTTCTTATATGTTTAAAAAA  647

seq1  AAAGGGAGTCTTGGAGATGACTCTGCATGCATATGTGCCTGTGTGCCTGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGTCTTGGAGATGACTCTGCATGCATATGTGCCTGTGTGCCTGT  697

seq1  GTATATATGTGTGTGTATGTGTGTGTGTGTGCACACGCGTGTGCACGTGC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTGTGTGTATGTGTGTGTGTGTGCACACGCGTGTGCACGTGC  747

seq1  ATGTGCATGTGTGTGTGTGTGTTGTATAGGCCAGAGGACAAGCTTAAGTA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGTGTGTGTGTGTGTTGTATAGGCCAGAGGACAAGCTTAAGTA  797

seq1  GTCTTTGTTAGGATCCATCTACTTTCTTGGCATAGGGTCTTTCACTAACC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTAGGATCCATCTACTTTCTTGGCATAGGGTCTTTCACTAACC  847

seq1  TGGACCTTTCCAAGTAGTTAGGGCTGATAGCGTGCCCAGGGATCTTCCTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTTCCAAGTAGTTAGGGCTGATAGCGTGCCCAGGGATCTTCCTG  897

seq1  TGTCTGCCTCTCCAGCTCTGGGATTACAGATACACATCATCACACCTGGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCTCCAGCTCTGGGATTACAGATACACATCATCACACCTGGG  947

seq1  TTTTTTTGAAAGTGCTGTGACTCAAACTCAGGCCCCCACTTGCTCAGCAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAAGTGCTGTGACTCAAACTCAGGCCCCCACTTGCTCAGCAA  997

seq1  ATACTTTCCCCATTGATTCACTCCCCCAGTACCCAGGAAGTGACTTCGGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCCCCATTGATTCACTCCCCCAGTACCCAGGAAGTGACTTCGGT  1047

seq1  TGGTTCTAAAAATCATGGAATTC  1056
      |||||||||||||||||||||||
seq2  TGGTTCTAAAAATCATGGAATTC  1070


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