BAC Information

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BAC

Clone NameB6Ng01-344A14
Chromosome5 (Build37)
Map Location 55,666,641 - 55,760,094
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344A14.bB6Ng01-344A14.g
ACCGA126644GA126645
length1,1861,145
definitionB6Ng01-344A14.b B6Ng01-344A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,758,892 - 55,760,094)(55,666,641 - 55,667,703)
sequence
gaattccatgccaccagagggagtccatgcctgacagggcctgaatggcc
aggaatgagaattcttgtgtaactcctaactgtaggaatggggtaggaac
tgtgacattttaatctgcacttgtgacccatttcctccaactgggttgtc
tattccagcattgtggttctgagtgtacatgcctagtcttattgtaactt
gttatgccacattaggttgatatccctgagaagcctggtcttttctgaag
ggaaaaggaagagaagtgggtaaagggagtatctaagaggaatggaggaa
gaggaaactgctgtccagatgaaatataggacataggaataaaatcaatc
aaccaagcaatcaataatctgccagatatagtggcatgtgtctttaattc
aagcagatttccagcaatgggaggcagaggcatgaagaacttactgagct
tcattgccagtttagtttacaatgagattaaggccagcaaggactacatt
aaaaagaatcagtttctaaaaatactgaatctacaaagtctaataaactt
ttgatagccagcatattgctgattttatttctcatacagtgaaagatatt
gcatacacaattagaaaggcttcaacagaagtaagacacgacctgtcttg
gctatactgacatctcacagggaaggactaccagtattttaacctgtgcc
tcctgttcttatttctcactatcagcagtagcgatccattacccactatt
tcaagaaaccaagcagagacaggattatcaacaccaagtggctgctttca
aaagtgacactactgactgaatagtcagcatcaaaaaatattaccatttt
ataccatacacatattctctgggaaatgcatgcccagaagaaagccctgg
agaatgaaaacaggaaggttacagaaagggaacttgttaaaaatgtgact
caatctaacctgccattaaatcagcaagcaaaattctttgtgagacagcc
agaaagcattgcaccaccatagataagatgtcaccatatgcctatatagg
tgctgtttgtgtgccatgctaggattgcacatcttctgggtgaaactggc
agtgtgcttaaggcttcaagctgactatgcactatatacacttaggttgc
gaggcatgttctctagaaaggaatgtgctaataatg

gaattcttcctgtctaaaagaacagccgggacaaaaatgaagaagagact
gagggaaaggatgtccagtgaccagctcaaatttggacccatttcaaggg
gaaactccaaggcctgacactatatttatagacaggagcctagcatgcct
gctttctgagaggcccaacaaacagctgactgagacagaagcagatactt
acattcaaccaatggtctgtaggctgggaccacatggttgaataagggaa
agactggaagaagttgaggaggaggataaccccataggaagaccaacagt
ttccacaaacctggacttctgagaactctcagacactgatccaccaacca
gacagcatacactagatggcccaaggtctctgacacatacacaacagagg
acctccttgtttggcctcaataagggaagatgcaccttaccctttaaata
cttgaggccccagagaatgggaggcctggcagggtgtaggggtatgggta
caaccacttggaaatgtgggaggaaaaatgggatgaggaactgttggaga
acagaacaggaggtcaataacgactggactgttaaaaagtggtaaatgat
aattaaaaacaagttctatctttccagatgaccaagtttattttgttcct
attgagagacatcataacacattattttgagctgttcaaatagccatgcc
aatatgatttcattttctaaaatctaggaattagtttctatttgacttac
aattttgctttgtatgttattcaaagtgaactcttttgtgtattagtgat
ttttctgtaagaactaatgagaatccaatgaagagtgatgaaaaattaag
tgtatgaagtaaatacatttaatctgttatatcatgtggcattatatcat
ccaagtattttactgtaaatggttagggtttaatttactctattctttcc
ttgtgttcttttgaggtttgtttatgtgagaaatcatatttgaggaaaac
tgcagaaagatatattttaatttagtaaccacaatttcttttgtgaaaca
ggatctcttttttcgttcagaaaaaaaaaatattctacacctcaggtgca
gctggagtcatcctacactcctttatttctgtttctttcattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55758892_55760094
seq2: B6Ng01-344A14.b_47_1232 (reverse)

seq1  CATTATTAGCACATTTCCTTCTTAAGAGAACATTGCCTTTGGCAACCTAA  50
      ||||||||||||||| | ||||  |||||||| ||||  | |||||||||
seq2  CATTATTAGCACATTCCTTTCT--AGAGAACA-TGCC--TCGCAACCTAA  45

seq1  GTGTATATAGTGCAATAGTCAAGGTTTTGAAGCCCTTAAGCACACTGCAA  100
      ||||||||||||| |||||||     |||||| ||||||||||||||| |
seq2  GTGTATATAGTGC-ATAGTCA---GCTTGAAG-CCTTAAGCACACTGCCA  90

seq1  GTTTTCCACCAGAAGATGTGCAAATTCCTAAGCATGGCACACAAACAAGC  150
      | ||||  |||||||||||||||  |||| |||||||||||||||| |||
seq2  G-TTTCACCCAGAAGATGTGCAA--TCCT-AGCATGGCACACAAAC-AGC  135

seq1  ACCTATATAGGCATATGGTGACATCTTATTCTATGGTGGTGCAATGCTTT  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTATATAGGCATATGGTGACATCTTA-TCTATGGTGGTGCAATGCTTT  184

seq1  CTGGCTGTCTCACAAAGAATTTTGCTTTGCTGATTTAATGGCAGGTTAGA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGGCTGTCTCACAAAGAATTTTGC-TTGCTGATTTAATGGCAGGTTAGA  233

seq1  TTGAGTCACATTTTTAACAAGTTCCCTTTCTGTAACCTTCCTGTTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCACATTTTTAACAAGTTCCCTTTCTGTAACCTTCCTGTTTTCAT  283

seq1  TCTCCAGGGCTTTCTTCTGGGCATGCATTTCCCAGAGAATATGTGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGCTTTCTTCTGGGCATGCATTTCCCAGAGAATATGTGTATGG  333

seq1  TATAAAATGGTAATATTTTTTGATGCTGACTATTCAGTCAGTAGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGGTAATATTTTTTGATGCTGACTATTCAGTCAGTAGTGTCAC  383

seq1  TTTTGAAAGCAGCCACTTGGTGTTGATAATCCTGTCTCTGCTTGGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGCAGCCACTTGGTGTTGATAATCCTGTCTCTGCTTGGTTTCT  433

seq1  TGAAATAGTGGGTAATGGATCGCTACTGCTGATAGTGAGAAATAAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTGGGTAATGGATCGCTACTGCTGATAGTGAGAAATAAGAACA  483

seq1  GGAGGCACAGGTTAAAATACTGGTAGTCCTTCCCTGTGAGATGTCAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAGGTTAAAATACTGGTAGTCCTTCCCTGTGAGATGTCAGTAT  533

seq1  AGCCAAGACAGGTCGTGTCTTACTTCTGTTGAAGCCTTTCTAATTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACAGGTCGTGTCTTACTTCTGTTGAAGCCTTTCTAATTGTGTA  583

seq1  TGCAATATCTTTCACTGTATGAGAAATAAAATCAGCAATATGCTGGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCTTTCACTGTATGAGAAATAAAATCAGCAATATGCTGGCTAT  633

seq1  CAAAAGTTTATTAGACTTTGTAGATTCAGTATTTTTAGAAACTGATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTTATTAGACTTTGTAGATTCAGTATTTTTAGAAACTGATTCTT  683

seq1  TTTAATGTAGTCCTTGCTGGCCTTAATCTCATTGTAAACTAAACTGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAGTCCTTGCTGGCCTTAATCTCATTGTAAACTAAACTGGCAA  733

seq1  TGAAGCTCAGTAAGTTCTTCATGCCTCTGCCTCCCATTGCTGGAAATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCAGTAAGTTCTTCATGCCTCTGCCTCCCATTGCTGGAAATCTG  783

seq1  CTTGAATTAAAGACACATGCCACTATATCTGGCAGATTATTGATTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTAAAGACACATGCCACTATATCTGGCAGATTATTGATTGCTTG  833

seq1  GTTGATTGATTTTATTCCTATGTCCTATATTTCATCTGGACAGCAGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGATTTTATTCCTATGTCCTATATTTCATCTGGACAGCAGTTTC  883

seq1  CTCTTCCTCCATTCCTCTTAGATACTCCCTTTACCCACTTCTCTTCCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCCATTCCTCTTAGATACTCCCTTTACCCACTTCTCTTCCTTT  933

seq1  TCCCTTCAGAAAAGACCAGGCTTCTCAGGGATATCAACCTAATGTGGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAGAAAAGACCAGGCTTCTCAGGGATATCAACCTAATGTGGCAT  983

seq1  AACAAGTTACAATAAGACTAGGCATGTACACTCAGAACCACAATGCTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTACAATAAGACTAGGCATGTACACTCAGAACCACAATGCTGGA  1033

seq1  ATAGACAACCCAGTTGGAGGAAATGGGTCACAAGTGCAGATTAAAATGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACCCAGTTGGAGGAAATGGGTCACAAGTGCAGATTAAAATGTC  1083

seq1  ACAGTTCCTACCCCATTCCTACAGTTAGGAGTTACACAAGAATTCTCATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCTACCCCATTCCTACAGTTAGGAGTTACACAAGAATTCTCATT  1133

seq1  CCTGGCCATTCAGGCCCTGTCAGGCATGGACTCCCTCTGGTGGCATGGAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCATTCAGGCCCTGTCAGGCATGGACTCCCTCTGGTGGCATGGAA  1183

seq1  TTC  1203
      |||
seq2  TTC  1186


seq1: chr5_55666641_55667703
seq2: B6Ng01-344A14.g_158_1210

seq1  TTCAAGGGGAAACTCCAAGGCCTGACACTATATTTATAGACAGGAGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGGAAACTCCAAGGCCTGACACTATATTTATAGACAGGAGCCTA  50

seq1  GCATGCCTGCTTTCTGAGAGGCCCAACAAACAGCTGACTGAGACAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTGCTTTCTGAGAGGCCCAACAAACAGCTGACTGAGACAGAAGC  100

seq1  AGATACTTACATTCAACCAATGGTCTGTAGGCTGGGACCACATGGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTACATTCAACCAATGGTCTGTAGGCTGGGACCACATGGTTGAA  150

seq1  TAAGGGAAAGACTGGAAGAAGTTGAGGAGGAGGATAACCCCATAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAAGACTGGAAGAAGTTGAGGAGGAGGATAACCCCATAGGAAGA  200

seq1  CCAACAGTTTCCACAAACCTGGACTTCTGAGAACTCTCAGACACTGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTTTCCACAAACCTGGACTTCTGAGAACTCTCAGACACTGATCC  250

seq1  ACCAACCAGACAGCATACACTAGATGGCCCAAGGTCTCTGACACATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAGACAGCATACACTAGATGGCCCAAGGTCTCTGACACATACAC  300

seq1  AACAGAGGACCTCCTTGTTTGGCCTCAATAAGGGAAGATGCACCTTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGACCTCCTTGTTTGGCCTCAATAAGGGAAGATGCACCTTACCC  350

seq1  TTTAAATACTTGAGGCCCCAGAGAATGGGAGGCCTGGCAGGGTGTAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACTTGAGGCCCCAGAGAATGGGAGGCCTGGCAGGGTGTAGGGG  400

seq1  TATGGGTACAACCACTTGGAAATGTGGGAGGAAAAATGGGATGAGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTACAACCACTTGGAAATGTGGGAGGAAAAATGGGATGAGGAACT  450

seq1  GTTGGAGAACAGAACAGGAGGTCAATAACGACTGGACTGTTAAAAAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAACAGAACAGGAGGTCAATAACGACTGGACTGTTAAAAAGTGG  500

seq1  TAAATGATAATTAAAAACAAGTTCTATCTTTCCAGATGACCAAGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAATTAAAAACAAGTTCTATCTTTCCAGATGACCAAGTTTATT  550

seq1  TTGTTCCTATTGAGAGACATCATAACACATTATTTTGAGCTGTTCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTATTGAGAGACATCATAACACATTATTTTGAGCTGTTCAAATA  600

seq1  GCCATGCCAATATGATTTCATTTTCTAAAATCTAGGAATTAGTTTCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCAATATGATTTCATTTTCTAAAATCTAGGAATTAGTTTCTATT  650

seq1  TGACTTACAATTTTGCTTTGTATGTTATTCAAAGTGAACTCTTTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACAATTTTGCTTTGTATGTTATTCAAAGTGAACTCTTTTGTGTA  700

seq1  TTAGTGATTTTTCTGTAAGAACTAATGAGAATCCAATGAAGAGTGATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATTTTTCTGTAAGAACTAATGAGAATCCAATGAAGAGTGATGAA  750

seq1  AAATTAAGTGTATGAAGTAAATACATTTAATCTGTTATATCATGTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTGTATGAAGTAAATACATTTAATCTGTTATATCATGTGGCAT  800

seq1  TATATCATCCAAGTATTTTACTGTAAATGGTTA-GGTTTAATTTACTCTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATATCATCCAAGTATTTTACTGTAAATGGTTAGGGTTTAATTTACTCTA  850

seq1  TTCTTTCCTTGTGTTCTTTTGAGGTTTGTTTATGTGAGAAATCAATAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TTCTTTCCTTGTGTTCTTTTGAGGTTTGTTTATGTGAGAAATCA--TATT  898

seq1  TGAGGAAAAACTGCAGAAAGATAATATTTTTAATTTAAGTAA-CACAATT  948
      ||||| |||||||||||||||| ||| ||||||||| ||||| |||||||
seq2  TGAGG-AAAACTGCAGAAAGAT-ATA-TTTTAATTT-AGTAACCACAATT  944

seq1  TC-TCTGTGAAACAGGATCTTTTTTTTTTTTTTCTTTTCAG--AAAAAAA  995
      || | ||||||||||||||| ||||||         |||||  |||||||
seq2  TCTTTTGTGAAACAGGATCTCTTTTTT-------CGTTCAGAAAAAAAAA  987

seq1  ATATTCTACACCTCAGGTGCAAGCT-GAGTCAT-CTACACTTCCCTTTAT  1043
      |||||||||||||||||||| |||| ||||||| |||||||  |||||||
seq2  ATATTCTACACCTCAGGTGC-AGCTGGAGTCATCCTACACT--CCTTTAT  1034

seq1  TTCTGTTTCTTTCTATTTTC  1063
      ||||||||||||| ||||||
seq2  TTCTGTTTCTTTC-ATTTTC  1053


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