BAC Information

Click to search

BAC

Clone NameB6Ng01-344I11
Chromosome5 (Build37)
Map Location 77,416,372 - 77,532,746
singlet/doubletdoublet
Overlap geneSrp72, Arl9, 1700023E05Rik, Hod
Upstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics
Downstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344I11.bB6Ng01-344I11.g
ACCGA126990GA126991
length1,1811,067
definitionB6Ng01-344I11.b B6Ng01-344I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,531,548 - 77,532,746)(77,416,372 - 77,417,431)
sequence
gaattcacaaaacacctgacagtgtttcagggactaccctagatactggc
gtagtcaaaattgcactacaaacccccacatctgcagaagtttctcacaa
gtcccattgatatctgaaccaaagcctcatttcccaagccagtttctaat
taaaatggtcttttaggaaagcatttgctttccaaataagtaaacggctt
cacttgggtactttaacaggataattttctttgatagttgtaattatagc
tatagttgaattttagctattctccagttgtgagttagcctgggagtcta
tctacagttcatattctttctggaggaaacttttctgaattcacgaacat
ccttatgaaaggcagactgcttacacatgcagatcaccctcttttgccca
tttatttccaaaaagattggctgaaatcatcacttgcttcccagcacact
cagaggagcctaaagctttcctgccatctttcacagtcccccaggctcca
caaaggagactgaaacagccaggcaggcagcaggctctcaatgaaaagag
ctctgtgtctgtgagaagaattgtatgttaagggtcaactaatgctcgac
tcacggctggaagccattcccagacacctgccccgcccctctgatagttt
ttcataacatctttctgttttctgaagaggatatagaaaaatccaaacca
ttgcaacataagtttcaggaacttccacaatcgattcggcacaaatctat
gatgtgatagcaacaaatacacccagccgctcttgccaaaggtaagctcc
accctcttctgtagaacgccgcaacttgttctcattggtacaccatgttc
tccaccaatggcatccctcagctagatctgcaccaatgagagaagagcat
gtgaggtaggaaagcctgatggtgtgagctgattttcctggctcgtccaa
tgagctgggtcaaagctgtgtctgctcactaagagacttgccacccgcag
atagggcatgggctcgcacgtgatccttgtgcatcgcataagccctctcc
acaactcccagcaatgggtatctgttcactgggctattcagaagtggtgt
gtagtaagggtgtaattggagtcagctttgggttaggctccactgcgcaa
taagaaagggagatctgaggcacccagtgat
gaattccaggcccccctgggctatagagtgaaaccctctctgaaaaccaa
aacctaaaaacaaaaaaatcaacaatgggaagataaaacaaaaatcttgt
tcttctctctaaagactccccccccccccccccccaagacagggtttctc
tgtatagtccttgctgtcctggaactcactttgtagaccaggctggcctc
gaactcagagatccgcctgttctctgcctcccgagtgctgggattaaagg
cgtgcgccaccatgcctggcttctaaagactttcatgtctgccttttcat
agctataactagactgggaaaaatgaattgcagtgatttttgtttagatg
cacaaaaacccaaagcaaatgtggctacgtcttgttagtttaggcacccc
aaccaataggtgtatacaagctttcttgctatgtatatgtgaaataaata
agtggaaaggagagtcccaaaagagtacgtagaaatttctgctaatagtg
ggtggccttttctttgtcaggaccaaaatgtctttgactccaagaaaaaa
gtgaaattaaccaatgcagaaggagtggagttcaagctctcaaagagaca
gctgcaagccatagagtttaacaaagctttgcttgccatgtatacaaacc
aggtaagtctgttttctgtctggctgacctggaactgctttggtacatga
ggcacaatgggtatttgtatgatctctttgtgttttgtcttatttccttc
cttagtattaataaattttaagttaattctcccactcctctcagcatatg
gcgttagtaagtttaagggtgttaacagctggaagaggctgttagtctta
actgtgcttgatgattggccctcgccgtgttcatgctgttgtgctgcatg
cccagccctttccctgactttccttactactctttctgaaatacagtgga
atctttaagacaccattcagaagctaagaatccagcttttattttcactt
gatgtttcacaattcataactgttaagaagttcagttctttcttttcctt
tatggtgttttgtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77531548_77532746
seq2: B6Ng01-344I11.b_46_1226 (reverse)

seq1  ATCACTTGGGTGCCTCAGATCTCCCGTCTTTTAATTGACCGAGTGGAGCC  50
      ||||| |||||||||||||||||||   || | |||| |  |||||||||
seq2  ATCAC-TGGGTGCCTCAGATCTCCC--TTTCTTATTG-CGCAGTGGAGCC  46

seq1  TAAAACCCAAAAAGCCTGACTTCTCCATTTACACCCTTAACTACCACACC  100
      |  ||||||||    ||||   ||||| |||||||||| |||| ||||||
seq2  T--AACCCAAA---GCTGA---CTCCAATTACACCCTT-ACTA-CACACC  86

seq1  ACCTTTCCTGAATAGCCCAGTGAACAGATAACCATTGCTGGGGAGTTGTG  150
      ||   | ||||||||||||||||||||||| |||||||| ||||||||||
seq2  AC---TTCTGAATAGCCCAGTGAACAGATACCCATTGCT-GGGAGTTGTG  132

seq1  GAGAGGGGCTATGCGATGCCACAGGATCACGTGCGAGGCCATGCCCTATC  200
      |||||||  ||||||||||   ||||||||||||||| ||||||||||||
seq2  GAGAGGGCTTATGCGATGCACAAGGATCACGTGCGAGCCCATGCCCTATC  182

seq1  TGCGGGTGGCAAGTCTCTTAGTGAGCAGACACAGCTTTGACCCAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTGGCAAGTCTCTTAGTGAGCAGACACAGCTTTGACCCAGCTCAT  232

seq1  TGGACGAGCCAGGAAAATCAGCTCACACCATCAGGCTTTCCTACCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGAGCCAGGAAAATCAGCTCACACCATCAGGCTTTCCTACCTCACA  282

seq1  TGCTCTTCTCTCATTGGTGCAGATCTAGCTGAGGGATGCCATTGGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTCTCATTGGTGCAGATCTAGCTGAGGGATGCCATTGGTGGAG  332

seq1  AACATGGTGTACCAATGAGAACAAGTTGCGGCGTTCTACAGAAGAGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTGTACCAATGAGAACAAGTTGCGGCGTTCTACAGAAGAGGGTG  382

seq1  GAGCTTACCTTTGGCAAGAGCGGCTGGGTGTATTTGTTGCTATCACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTACCTTTGGCAAGAGCGGCTGGGTGTATTTGTTGCTATCACATCA  432

seq1  TAGATTTGTGCCGAATCGATTGTGGAAGTTCCTGAAACTTATGTTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGTGCCGAATCGATTGTGGAAGTTCCTGAAACTTATGTTGCAAT  482

seq1  GGTTTGGATTTTTCTATATCCTCTTCAGAAAACAGAAAGATGTTATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGATTTTTCTATATCCTCTTCAGAAAACAGAAAGATGTTATGAAA  532

seq1  AACTATCAGAGGGGCGGGGCAGGTGTCTGGGAATGGCTTCCAGCCGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCAGAGGGGCGGGGCAGGTGTCTGGGAATGGCTTCCAGCCGTGAG  582

seq1  TCGAGCATTAGTTGACCCTTAACATACAATTCTTCTCACAGACACAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCATTAGTTGACCCTTAACATACAATTCTTCTCACAGACACAGAGC  632

seq1  TCTTTTCATTGAGAGCCTGCTGCCTGCCTGGCTGTTTCAGTCTCCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTGAGAGCCTGCTGCCTGCCTGGCTGTTTCAGTCTCCTTTGT  682

seq1  GGAGCCTGGGGGACTGTGAAAGATGGCAGGAAAGCTTTAGGCTCCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGGGGACTGTGAAAGATGGCAGGAAAGCTTTAGGCTCCTCTGA  732

seq1  GTGTGCTGGGAAGCAAGTGATGATTTCAGCCAATCTTTTTGGAAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGGAAGCAAGTGATGATTTCAGCCAATCTTTTTGGAAATAAAT  782

seq1  GGGCAAAAGAGGGTGATCTGCATGTGTAAGCAGTCTGCCTTTCATAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAAGAGGGTGATCTGCATGTGTAAGCAGTCTGCCTTTCATAAGGA  832

seq1  TGTTCGTGAATTCAGAAAAGTTTCCTCCAGAAAGAATATGAACTGTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTGAATTCAGAAAAGTTTCCTCCAGAAAGAATATGAACTGTAGAT  882

seq1  AGACTCCCAGGCTAACTCACAACTGGAGAATAGCTAAAATTCAACTATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCAGGCTAACTCACAACTGGAGAATAGCTAAAATTCAACTATAG  932

seq1  CTATAATTACAACTATCAAAGAAAATTATCCTGTTAAAGTACCCAAGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTACAACTATCAAAGAAAATTATCCTGTTAAAGTACCCAAGTGA  982

seq1  AGCCGTTTACTTATTTGGAAAGCAAATGCTTTCCTAAAAGACCATTTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTTTACTTATTTGGAAAGCAAATGCTTTCCTAAAAGACCATTTTAA  1032

seq1  TTAGAAACTGGCTTGGGAAATGAGGCTTTGGTTCAGATATCAATGGGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTGGCTTGGGAAATGAGGCTTTGGTTCAGATATCAATGGGACT  1082

seq1  TGTGAGAAACTTCTGCAGATGTGGGGGTTTGTAGTGCAATTTTGACTACG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAACTTCTGCAGATGTGGGGGTTTGTAGTGCAATTTTGACTACG  1132

seq1  CCAGTATCTAGGGTAGTCCCTGAAACACTGTCAGGTGTTTTGTGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCTAGGGTAGTCCCTGAAACACTGTCAGGTGTTTTGTGAATTC  1181

seq1: chr5_77416372_77417431
seq2: B6Ng01-344I11.g_67_1133

seq1  GAATTCCAGGCCCCCCTGGGCTATAGAGTGAAACCCTCTCTGAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCCCCCTGGGCTATAGAGTGAAACCCTCTCTGAAAACCAA  50

seq1  AACCTAAAAACAAAAAAATCAACAATGGGAAGATAAAACAAAAATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAAACAAAAAAATCAACAATGGGAAGATAAAACAAAAATCTTGT  100

seq1  TCTTCTCTCTAAAGACTCCCCCCCCCCCCCCCCCCAAGACAGGGTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCTAAAGACTCCCCCCCCCCCCCCCCCCAAGACAGGGTTTCTC  150

seq1  TGTATAGTCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTCCTTGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  200

seq1  GAACTCAGAGATCCGCCTGTTCTCTGCCTCCCGAGTGCTGGGATTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGATCCGCCTGTTCTCTGCCTCCCGAGTGCTGGGATTAAAGG  250

seq1  CGTGCGCCACCATGCCTGGCTTCTAAAGACTTTCATGTCTGCCTTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCACCATGCCTGGCTTCTAAAGACTTTCATGTCTGCCTTTTCAT  300

seq1  AGCTATAACTAGACTGGGAAAAATGAATTGCAGTGATTTTTGTTTAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAACTAGACTGGGAAAAATGAATTGCAGTGATTTTTGTTTAGATG  350

seq1  CACAAAAACCCAAAGCAAATGTGGCTACGTCTTGTTAGTTTAGGCACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACCCAAAGCAAATGTGGCTACGTCTTGTTAGTTTAGGCACCCC  400

seq1  AACCAATAGGTGTATACAAGCTTTCTTGCTATGTATATGTGAAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAGGTGTATACAAGCTTTCTTGCTATGTATATGTGAAATAAATA  450

seq1  AGTGGAAAGGAGAGTCCCAAAAGAGTACGTAGAAATTTCTGCTAATAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGGAGAGTCCCAAAAGAGTACGTAGAAATTTCTGCTAATAGTG  500

seq1  GGTGGCCTTTTCTTTGTCAGGACCAAAATGTCTTTGACTCCAAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTTTCTTTGTCAGGACCAAAATGTCTTTGACTCCAAGAAAAAA  550

seq1  GTGAAATTAACCAATGCAGAAGGAGTGGAGTTCAAGCTCTCAAAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTAACCAATGCAGAAGGAGTGGAGTTCAAGCTCTCAAAGAGACA  600

seq1  GCTGCAAGCCATAGAGTTTAACAAAGCTTTGCTTGCCATGTATACAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGCCATAGAGTTTAACAAAGCTTTGCTTGCCATGTATACAAACC  650

seq1  AGGTAAGTCTGTTTTCTGTCTGGCTGACCTGGAACTGCTTTGGTACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTCTGTTTTCTGTCTGGCTGACCTGGAACTGCTTTGGTACATGA  700

seq1  GGCACAATGGGTATTTGTATGATCTCTTTGTGTTTTGTCTTATTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATGGGTATTTGTATGATCTCTTTGTGTTTTGTCTTATTTCCTTC  750

seq1  CTTAGTATTAAT-AATTTTAAGTTAATTCTCCCACTCCTCTCAGCATATG  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTAATAAATTTTAAGTTAATTCTCCCACTCCTCTCAGCATATG  800

seq1  GCGTTAGTAAGTTTAAGGGTGTTAACAGCTGGAAGAGGCTGTTAGTC-TA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCGTTAGTAAGTTTAAGGGTGTTAACAGCTGGAAGAGGCTGTTAGTCTTA  850

seq1  ACTGTGC-TGATGATTGG-CCTCGCCGTGTTCATGCTGTTGTGCTGCATG  896
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGTGCTTGATGATTGGCCCTCGCCGTGTTCATGCTGTTGTGCTGCATG  900

seq1  CCCAGCCC-TTCCCTGACTTTCCTTACTACTCTTTCTGAAATACAGTGGA  945
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTTTCCCTGACTTTCCTTACTACTCTTTCTGAAATACAGTGGA  950

seq1  ATCTTTAAAGACACCATTCAG-AGCTAAG-ATCCAGCTTTTA-TTTCACT  992
      |||||| |||||||||||||| ||||||| |||||||||||| |||||||
seq2  ATCTTT-AAGACACCATTCAGAAGCTAAGAATCCAGCTTTTATTTTCACT  999

seq1  TGATGTGTCACAAATCATAACTGTTAAGAAGTTCAGTTCTTTCTTTTTCC  1042
      |||||| |||||| ||||||||||||||||||||||||||||| ||||||
seq2  TGATGTTTCACAATTCATAACTGTTAAGAAGTTCAGTTCTTTC-TTTTCC  1048

seq1  TTTAT-GTGTTTTGTTTGC  1060
      ||||| |||||||||||||
seq2  TTTATGGTGTTTTGTTTGC  1067