BAC Information

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BAC

Clone NameB6Ng01-344N23
Chromosome5 (Build37)
Map Location 5,103,314 - 5,213,268
singlet/doubletdoublet
Overlap genePftk1
Upstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344N23.bB6Ng01-344N23.g
ACCGA127245GA127246
length4311,156
definitionB6Ng01-344N23.b B6Ng01-344N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,212,833 - 5,213,268)(5,103,314 - 5,104,476)
sequence
cattttaaaaacataaaataaaacattgaagagataaaatgtagacaatt
cctgaatagtttttttttttaaatctttgtagatatttgacttgaagagg
gtgtgtgtgtgtgtgtgtgtctgcccaaattgccaaataatcagattcag
tttctttgaaagaaaaattcctcatgagtaggagctaggtagcctgtttt
ttattttttctgggctggatttttccatgagtgcaatagtggaaggatgc
tttatcatggagactggggattttctttctgctgtaaatgcagtgtgcca
tgggagttctatgcgttaccccttatgtgtgttaagtgagcgaatatcta
cttattcttgagtatattgagaccatgtagctagagtcgtttctccttaa
tgttgtctttgagcataaatggaagcatcct

gaattcttataactgcagctaaacacacagcctcaatgtgtaaccataac
aatgaatgcattctaatcatagaacatacattttatctttcccttttaat
gagaaaattctttaaaccaagattaaaaactcaagagggataggataacc
cctctgaatgtaaatgtttgaagaaagaacagacaaattgtatatttttt
aaataaaggcatttatatatcacaaatgttcttttaactcagttatctga
aattatcagaaatgtaaaaatattaaaaatcagaatatatgttataacta
aaagctgccacaaagtacgaaacaatctgaatgtttctgtattaaaacta
atgttaaaacactgcaattcccaccaattaaaataataattagtccttta
cacagaagattttagatttaagctaaaaatacacatatgaaaaataaaac
ctcacggtcttaaaatactgtttcttaccttcacattatctggatggagt
cctccagggtgcttgtccatgtactgacataaatcagtgtgctaggaaaa
aagggtgaaaatgtattaacatccctctggctatagcatgatgaatcaat
atttttctacttcaaagtcaaaatcaccttctggacaaaacaaatacaaa
atatgtgagttaattttttagagtatgcagtttcatgccccaccagtccc
catttttaaccataataaaaccatcttcaccttcaggttttatattaaca
acatttgcattaataggaatacatgcttacagtttactaagtgttggttt
cctcattgaatatacattctgatacttaaacaaaaatccagtcacaagtt
ttccgaagtcaacttaaattatttattttatgtgagctgaagacattcaa
aacctggttatcctagtaaaattaataactgggattttcacacatatata
cacataattttttttttagttttcaagaactgacttatatttaaatagct
acaaattataaattaacaaaaaatgctttcaaggtacactttaagaaagg
aacagacagtactattaacacactctgctaatacacaggttatttctcag
gcatgacaaagttaatgtaccatgatgtattttcttactacttgttatgt
gatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5212833_5213268
seq2: B6Ng01-344N23.b_49_484 (reverse)

seq1  GGATGCTTCCATTTATGCTCAAAGACAACATTAAGGAGAAACGACTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTCCATTTATGCTCAAAGACAACATTAAGGAGAAACGACTCTAG  50

seq1  CTACATGGTCTCAATATACTCAAGAATAAGTAGATATTCGCTCACTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTCTCAATATACTCAAGAATAAGTAGATATTCGCTCACTTAAC  100

seq1  ACACATAAGGGGTAACGCATAGAACTCCCATGGCACACTGCATTTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGGGGTAACGCATAGAACTCCCATGGCACACTGCATTTACAGC  150

seq1  AGAAAGAAAATCCCCAGTCTCCATGATAAAGCATCCTTCCACTATTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAATCCCCAGTCTCCATGATAAAGCATCCTTCCACTATTGCAC  200

seq1  TCATGGAAAAATCCAGCCCAGAAAAAATAAAAAACAGGCTACCTAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAAATCCAGCCCAGAAAAAATAAAAAACAGGCTACCTAGCTCC  250

seq1  TACTCATGAGGAATTTTTCTTTCAAAGAAACTGAATCTGATTATTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAGGAATTTTTCTTTCAAAGAAACTGAATCTGATTATTTGGCA  300

seq1  ATTTGGGCAGACACACACACACACACACACCCTCTTCAAGTCAAATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCAGACACACACACACACACACACCCTCTTCAAGTCAAATATCT  350

seq1  ACAAAGATTTAAAAAAAAAAACTATTCAGGAATTGTCTACATTTTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATTTAAAAAAAAAAACTATTCAGGAATTGTCTACATTTTATCTC  400

seq1  TTCAATGTTTTATTTTATGTTTTTAAAATGGAATTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTTTATTTTATGTTTTTAAAATGGAATTC  436


seq1: chr5_5103314_5104476
seq2: B6Ng01-344N23.g_69_1224

seq1  GAATTCTTATAACTGCAGCTAAACACACAGCCTCAATGTGTAACCATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAACTGCAGCTAAACACACAGCCTCAATGTGTAACCATAAC  50

seq1  AATGAATGCATTCTAATCATAGAACATACATTTTATCTTTCCCTTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCATTCTAATCATAGAACATACATTTTATCTTTCCCTTTTAAT  100

seq1  GAGAAAATTCTTTAAACCAAGATTAAAAACTCAAGAGGGATAGGATAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATTCTTTAAACCAAGATTAAAAACTCAAGAGGGATAGGATAACC  150

seq1  CCTCTGAATGTAAATGTTTGAAGAAAGAACAGACAAATTGTATATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATGTAAATGTTTGAAGAAAGAACAGACAAATTGTATATTTTTT  200

seq1  AAATAAAGGCATTTATATATCACAAATGTTCTTTTAACTCAGTTATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGCATTTATATATCACAAATGTTCTTTTAACTCAGTTATCTGA  250

seq1  AATTATCAGAAATGTAAAAATATTAAAAATCAGAATATATGTTATAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAGAAATGTAAAAATATTAAAAATCAGAATATATGTTATAACTA  300

seq1  AAAGCTGCCACAAAGTACGAAACAATCTGAATGTTTCTGTATTAAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCCACAAAGTACGAAACAATCTGAATGTTTCTGTATTAAAACTA  350

seq1  ATGTTAAAACACTGCAATTCCCACCAATTAAAATAATAATTAGTCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAACACTGCAATTCCCACCAATTAAAATAATAATTAGTCCTTTA  400

seq1  CACAGAAGATTTTAGATTTAAGCTAAAAATACACATATGAAAAATAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGATTTTAGATTTAAGCTAAAAATACACATATGAAAAATAAAAC  450

seq1  CTCACGGTCTTAAAATACTGTTTCTTACCTTCACATTATCTGGATGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGTCTTAAAATACTGTTTCTTACCTTCACATTATCTGGATGGAGT  500

seq1  CCTCCAGGGTGCTTGTCCATGTACTGACATAAATCAGTGTGCTAGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGTGCTTGTCCATGTACTGACATAAATCAGTGTGCTAGGAAAA  550

seq1  AAGGGTGAAAATGTATTAACATCCCTCTGGCTATAGCATGATGAATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAAAATGTATTAACATCCCTCTGGCTATAGCATGATGAATCAAT  600

seq1  ATTTTTCTACTTCAAAGTCAAAATCACCTTCTGGACAAAACAAATACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTACTTCAAAGTCAAAATCACCTTCTGGACAAAACAAATACAAA  650

seq1  ATATGTGAGTTAATTTTTTAGAGTATGCAGTTTCATGCCCCACCAGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGAGTTAATTTTTTAGAGTATGCAGTTTCATGCCCCACCAGTCCC  700

seq1  CATTTTTAACCATAATAAAACCATCTTCACCTTCAGGTTTTATATTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACCATAATAAAACCATCTTCACCTTCAGGTTTTATATTAACA  750

seq1  ACATTTGCATTAATAGGAATACATGCTTACAGTTTACTAAGTGTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCATTAATAGGAATACATGCTTACAGTTTACTAAGTGTTGGTTT  800

seq1  CCTCATTGAATATACATTCTGATACTT-AACAAAAATCCAGTCACAAGTT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCATTGAATATACATTCTGATACTTAAACAAAAATCCAGTCACAAGTT  850

seq1  TTCCGAAGTCAACTTAAATTATTTATTTTATGTGAGCTGAAGACATTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGTCAACTTAAATTATTTATTTTATGTGAGCTGAAGACATTCAA  900

seq1  AACCTGGTTATCCTAGTAAAATTAATAACT-GGATTTTCACACATATATA  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACCTGGTTATCCTAGTAAAATTAATAACTGGGATTTTCACACATATATA  950

seq1  CACATAATTTTTTTTTTAGTTTTCAAGAACTGAC-TATATTTAAATAGCT  997
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACATAATTTTTTTTTTAGTTTTCAAGAACTGACTTATATTTAAATAGCT  1000

seq1  ACAAATTATAAATTAAC-AAAAATGCTTTCAAAGTAACAACTTTAAGAAA  1046
      ||||||||||||||||| |||||||||||||| |||   |||||||||||
seq2  ACAAATTATAAATTAACAAAAAATGCTTTCAAGGTA--CACTTTAAGAAA  1048

seq1  GG-ACAGACAGGTACCTATTAACACACTCTGCTAATACACA-GTTATTTC  1094
      || ||||||| ||| |||||||||||||||||||||||||| ||||||||
seq2  GGAACAGACA-GTA-CTATTAACACACTCTGCTAATACACAGGTTATTTC  1096

seq1  TCAGGCATGAC-AAGTTAATGTACCAATGATAGTTATTTTTCCTTAACTT  1143
      ||||||||||| ||||||||||||| |||||   ||||||       |||
seq2  TCAGGCATGACAAAGTTAATGTACC-ATGAT--GTATTTT-------CTT  1136

seq1  ACTTTTGTTTATGTGATGAA  1163
      |||  |  ||||||||||||
seq2  ACTACTTGTTATGTGATGAA  1156


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