MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-344P21
Chromosome	17 (Build37)	5 (Build37)
Map Location	5,499,644 - 5,500,002	134,991,412 - 134,992,462
singlet/doublet	singlet	singlet
Overlap gene	Zdhhc14
Upstream gene	Ppia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312
Downstream gene	3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ppia-ps17_26.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:224460
definition	note : peptidyl-prolyl cis-trans isomerase A pseudogene 17_26.1 pseudo : _no_value

name	Arid1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239985 MGI:1926129
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 141 ESTs, 6 Proteins

name	5730437N04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70544 MGI:1917794
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ldhal6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106557 MGI:2146830
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040282 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC666919 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100040312 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040312
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Zdhhc14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224454 MGI:2653229
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3300005D01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78512 MGI:1925762
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	LOC100040342 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 272 ESTs, 12 Proteins

name	LOC100040352 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040352
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Snx9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66616 MGI:1913866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666951 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666951
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Synj2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20975 MGI:1201671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serac1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:321007 MGI:2447813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gtf2h5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66467 MGI:107227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210038L17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78646 MGI:1925896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545184 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545184
definition	note : fibrillarin-like pseudo : _no_value

name	Tulp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68842 MGI:1916092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433058 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433058 MGI:3644697
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 107 ESTs, 6 Proteins

name	Tmem181 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77106 MGI:1924356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040453 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040453
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 105 ESTs, 6 Proteins

name	LOC100040471 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 267 ESTs, 7 Proteins

name	Dynlt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21648 MGI:98643
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547127 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547127
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040488 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 118 ESTs, 6 Proteins

name	Arid1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401537 GeneID:239985 MGI:1926129
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 132 ESTs, 4 Proteins product : AT rich interactive domain 1B (Swi1 like), transcript variant 2 transcript_id : XM_888675.2

name	Arid1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401536 GeneID:239985 MGI:1926129
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 141 ESTs, 4 Proteins product : AT rich interactive domain 1B (Swi1 like), transcript variant 1 transcript_id : XM_139711.8

name	Arid1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268285 GeneID:239985 MGI:1926129
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 139 ESTs, 4 Proteins product : AT rich interactive domain 1B (Swi1 like) transcript_id : XM_001474848.1

name	5730437N04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366010 GeneID:70544 MGI:1917794
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730437N04 gene transcript_id : NM_027457.3

name	Ldhal6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31044417 GeneID:106557 MGI:2146830
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lactate dehydrogenase A-like 6B transcript_id : NM_175349.2

name	LOC100040282 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268287 GeneID:100040282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to GPI-anchored cell surface glycoprotein required for diploid pseudohyphal formation and haploid invasive growth, transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p) transcript_id : XM_001474427.1

name	LOC100040312 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268289 GeneID:100040312
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical protein LOC100040312 transcript_id : XM_001474484.1

name	Zdhhc14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51799027 GeneID:224454 MGI:2653229
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 14 transcript_id : NM_146073.3

name	3300005D01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268291 GeneID:78512 MGI:1925762
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : RIKEN cDNA 3300005D01 gene transcript_id : XM_987107.2

name	LOC100040342 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268293 GeneID:100040342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 272 ESTs, 12 Proteins product : similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) transcript_id : XM_001474523.1

name	Snx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626032 GeneID:66616 MGI:1913866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 9 transcript_id : NM_025664.3

name	Synj2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21362256 GeneID:20975 MGI:1201671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptojanin 2 transcript_id : NM_011523.1

name	Serac1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345698 GeneID:321007 MGI:2447813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine active site containing 1 transcript_id : NM_001033127.2

name	Serac1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802959 GeneID:321007 MGI:2447813
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine active site containing 1 transcript_id : NM_177311.3

name	Gtf2h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346453 GeneID:66467 MGI:107227
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor IIH, polypeptide 5 transcript_id : NM_181392.2

name	2210038L17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85702046 GeneID:78646 MGI:1925896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210038L17 gene transcript_id : NM_001033529.1

name	Tulp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383137 GeneID:68842 MGI:1916092
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubby like protein 4 transcript_id : NM_054040.2

name	EG433058 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401557 GeneID:433058 MGI:3644697
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 107 ESTs, 6 Proteins product : predicted gene, EG433058 transcript_id : XM_484582.4

name	Tmem181 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75677513 GeneID:77106 MGI:1924356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 181 transcript_id : NM_001033178.1

name	LOC100040453 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268295 GeneID:100040453
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 105 ESTs, 6 Proteins product : similar to protein phosphatase 1, regulatory (inhibitor) subunit 2 transcript_id : XM_001474700.1

name	LOC100040471 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268297 GeneID:100040471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 267 ESTs, 7 Proteins product : similar to tubby like protein 4 transcript_id : XM_001474739.1

name	Dynlt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476289 GeneID:21648 MGI:98643
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein light chain Tctex-type 1 transcript_id : NM_009342.2

name	LOC547127 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:113865914 GeneID:547127
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : similar to KIAA1423 protein transcript_id : NM_001045538.1

name	LOC100040488 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268299 GeneID:100040488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 118 ESTs, 6 Proteins product : similar to protein phosphatase 1, regulatory (inhibitor) subunit 2 transcript_id : XM_001475435.1

name	Arid1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82981744 GeneID:239985 MGI:1926129
definition	codon_start : 1 product : AT rich interactive domain 1B (Swi1 like) isoform 2 protein_id : XP_893768.1

name	Arid1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82981753 GeneID:239985 MGI:1926129
definition	codon_start : 1 product : AT rich interactive domain 1B (Swi1 like) isoform 1 protein_id : XP_139711.7

name	Arid1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268286 GeneID:239985 MGI:1926129
definition	codon_start : 1 product : AT rich interactive domain 1B (Swi1 like) protein_id : XP_001474898.1

name	5730437N04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328297 GeneID:70544 MGI:1917794
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC70544 protein_id : NP_081733.2

name	Ldhal6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425048 GeneID:106557 MGI:2146830
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_process : GO:0019642 - anaerobic glycolysis [Evidence IEA]; GO:0006100 - tricarboxylic acid cycle intermediate metabolism [Evidence IEA] codon_start : 1 product : L-lactate dehydrogenase A-like protein_id : NP_780558.1

name	LOC100040282 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268288 GeneID:100040282
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474477.1

name	LOC100040312 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268290 GeneID:100040312
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474534.1

name	Zdhhc14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51799028 GeneID:224454 MGI:2653229
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : NEW1 domain containing protein product : zinc finger, DHHC domain containing 14 protein_id : NP_666185.3

name	3300005D01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268292 GeneID:78512 MGI:1925762
definition	codon_start : 1 product : hypothetical protein LOC78512 protein_id : XP_992201.2

name	LOC100040342 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268294 GeneID:100040342
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474573.1

name	Snx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29568084 GeneID:66616 MGI:1913866
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005792 - microsome [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0035091 - phosphoinositide binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006886 - intracellular protein transport [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : sorting nexin 9 protein_id : NP_079940.2

name	Synj2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362257 CCDS:CCDS28365.1 GeneID:20975 MGI:1201671
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0001668 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA]; GO:0004439 - phosphoinositide 5-phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] codon_start : 1 exception : mismatches in translation function : 5' lipid phosphatase product : synaptojanin 2 protein_id : NP_035653.1

name	Serac1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701654 GeneID:321007 MGI:2447813
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : serine active site containing 1 isoform 1 protein_id : NP_001028299.1

name	Serac1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893415 CCDS:CCDS28366.1 GeneID:321007 MGI:2447813
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : serine active site containing 1 isoform 2 protein_id : NP_796285.1

name	Gtf2h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31088918 GeneID:66467 MGI:107227
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : general transcription factor IIH, polypeptide 5 protein_id : NP_852057.1

name	2210038L17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702047 GeneID:78646 MGI:1925896
definition	codon_start : 1 product : hypothetical protein LOC78646 protein_id : NP_001028701.1

name	Tulp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16905077 CCDS:CCDS28370.1 GeneID:68842 MGI:1916092
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : tubby super-family protein product : tubby like protein 4 protein_id : NP_473381.1

name	EG433058 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63701773 GeneID:433058 MGI:3644697
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484582.2

name	Tmem181 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677514 GeneID:77106 MGI:1924356
definition	codon_start : 1 product : G protein-coupled receptor 178 protein_id : NP_001028350.1

name	LOC100040453 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268296 GeneID:100040453
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474750.1

name	LOC100040471 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268298 GeneID:100040471
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474789.1

name	Dynlt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678265 CCDS:CCDS28371.1 GeneID:21648 MGI:98643
definition	GO_component : GO:0005858 - axonemal dynein complex [Evidence TAS]; GO:0005868 - cytoplasmic dynein complex [Evidence TAS] [Evidence ISS]; GO:0030286 - dynein complex [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0003774 - motor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007017 - microtubule-based process [Evidence IDA] codon_start : 1 product : t-complex testis expressed 1 protein_id : NP_033368.1

name	LOC547127 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:113865915 GeneID:547127
definition	codon_start : 1 product : hypothetical protein LOC547127 protein_id : NP_001039003.1

name	LOC100040488 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268300 GeneID:100040488
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475485.1

name	LOC666919 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666919
definition	number : 4 pseudo : _no_value

name	LOC666919 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666919
definition	number : 3 pseudo : _no_value

name	LOC666919 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666919
definition	number : 2 pseudo : _no_value

name	LOC666919 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666919
definition	number : 1 pseudo : _no_value

name	LOC100040352 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040352
definition	number : 1 pseudo : _no_value

name	LOC666951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666951
definition	number : 1 pseudo : _no_value

name	LOC666951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666951
definition	number : 2 pseudo : _no_value

name	LOC666951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666951
definition	number : 3 pseudo : _no_value

name	LOC666951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666951
definition	number : 4 pseudo : _no_value

clone name	MSMg01-170I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482D20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-458L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127E14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-462D07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-393E13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-119O16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-367K24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-471O03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-108C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-484M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-543H16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-062L12
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-005E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-344P21.b	B6Ng01-344P21.g
ACC	GA127334	GA127335
length	744	1,031
definition	B6Ng01-344P21.b	B6Ng01-344P21.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(5,499,644 - 5,500,002)	(134,991,412 - 134,992,462)
sequence	gaattccttcctttcttccttcttggttaaaggtgtgcaccattaggggc tggagagatggctcagcggttaggagcactgcctgctcttccagaggtct tgagttcaattcccagtagccacataatgcctcacaaccatctgtaatgg gatccgatgccctcttctagtgttctgaagacagctgcagtgtatgcgta tacagaaaataagtaaatctcaaaaaaataaataaataaaaataaaaaag ggtgtgtgccaccacctcccagctggttttgaacaacatcttcttcttct tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc ttcttcttcttcttcttcttcttcctcttcctcttcctcttcctctcctc cttctccttctcccttctcccttctcccttcttcttctcctttttggttt ttcgagacagggtttctctgtatagccctagctgtcctggaactcacttt gtagaccaggctggcctcgaactcagaaatggcctgcctctgtctcctga gtgctgggattaaaggcgtgctccaccatgcccaacggttttgaacttct gatccacctgcctctatctcctgagtgtcatgacgacaggtgtctgccat catacccagtttatgtggtgtcaagaatggagcccagggggctggtgaga tggctcagtgggtaagagcacctgactgctctccgaaggtctga	gaattccaaggagctgtcacatgaatcctaggtaaggagagaagaggagg ccacctgggtttggcagagggacttcagtatagcttggtctgtggtccct gttgaagtctgactctcagccatcatgttgcctttgagagtgaatcagca atgactttagggcatcctgggcactgacagagaaggacaagacttctcat cctgtgttagtgaggccagagggagcaagctgagcttcagtacagcacaa cacaacacaacacaacacaatatgatacagtatcttgagtctcgcccatg cccactctctgcagctcacagagacctcttcgcgctatgcccggaagatc tcaggcaccacagctctgcaggaggccctgaaggagaagcagcagcacat tgaacagctgctggctgagcgcgacttggagagagccgaagtagccaagg ctaccagccatatctgtgaggtggagaaggagatcgccctgctgaaggca cagcatgagcaggtgggtggctggtgggctctgggctgcacggagtacct cttcccacggggctcctgaaagctggaaacctcaggcacactgcacaacc tacagccagctcagcagcctagaaagtgtctctgttagcgagctcagttg atttgggcctctaccaggcagcttgtcctgtctgagagcactcgcctgct tgtagaagcttaggaggaagggccagagtgagccttgtcaatttctagga cttcctgaaactattgagttgtctatttcctcagttttaacaagtttatc tacaagatgggctattgaacttacctttagaacatcctgcattttaacag acgtctctccaagactccaagagaggattcctttgagggaccctatcttt agggtttactgctgtgacagataccataaccaagccactctttttttttg agatatatatatgtgtagtacactgtagctgtcttagacacacagagagg gcatcagattccattaacagatgtcgtgagc
quality values	Open. Hide. 62 31 38 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 59 46 43 33 46 59 33 37 56 59 59 62 59 62 59 59 62 62 62 62 62 62 62 62 59 59 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 54 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 62 62 62 62 62 62 62 62 56 56 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 39 40 62 62 62 62 62 62 62 62 62 62 62 46 62 62 52 46 52 52 52 52 43 46 52 52 48 52 52 46 47 46 46 46 52 54 52 43 44 40 46 52 58 58 41 41 41 52 52 47 52 52 58 54 44 44 58 54 58 54 54 52 58 58 58 58 58 58 58 58 58 58 58 54 58 54 47 47 48 48 51 50 58 58 58 58 58 51 58 54 58 45 58 58 54 58 51 51 39 54 58 40 39 27 42 42 58 51 51 58 48 58 58 58 41 44 44 43 44 58 46 58 58 49 49 49 50 39 49 58 58 58 58 44 41 58 58 58 58 58 58 58 58 58 58 58 58 50 58 58 58 54 49 54 54 49 54 54 54 42 35 40 44 35 37 50 49 44 37 39 44 49 49 51 51 51 39 46 51 44 51 54 44 44 33 33 54 54 51 54 51 54 54 54 54 54 54 53 54 54 54 54 54 54 51 54 51 40 34 32 32 46 46 40 46 51 53 32 47 47 46 46 46 40 47 47 41 35 51 41 38 40 33 40 40 33 36 32 40 32 46 46 40 47 47 42 41 38 41 34 32 51 46 22 25 33 31 37 31 30 31 31 18 24 31 46 51 51 51 41 30 41 31 45 33 32 30 38 33 31 46 40 41 30 31 40 37 42 31 41 41 40 46 42 42 46 31 31 27 31 19 43 33 40 31 31 37 31 22 4 22 38 31 29 30 34 23 8 30 18 31 39 31 30 24 37 23 19 38 31 23 30 39 31 31 29 14 21 36 12 18 6 16 22 24 34	Open. Hide. 62 49 62 47 62 62 47 29 59 62 62 35 62 62 62 62 62 59 56 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 59 59 62 62 62 59 54 54 62 62 62 59 62 62 62 62 59 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 54 62 62 62 62 62 62 62 62 62 62 54 54 48 62 62 62 62 62 62 48 62 62 62 58 54 58 54 54 58 58 58 58 58 58 58 58 58 41 54 54 54 54 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 58 58 58 49 39 58 58 54 51 58 58 58 58 58 54 58 58 58 58 58 58 58 58 49 58 58 58 58 42 58 54 45 58 58 58 58 58 48 58 58 50 58 50 58 58 58 41 43 48 58 54 58 51 58 51 51 54 58 58 58 51 53 51 40 49 51 51 51 34 51 54 51 54 52 58 46 51 51 51 53 53 58 43 58 58 52 58 50 50 42 43 33 50 54 58 50 48 42 50 49 48 48 58 41 58 40 58 49 41 42 49 58 50 54 51 58 53 58 58 51 50 50 58 50 46 41 51 58 53 53 52 58 49 50 35 32 58 50 54 44 44 42 44 51 49 51 38 46 54 42 29 51 52 49 49 49 54 41 54 40 41 46 37 54 41 38 49 49 46 14 49 32 45 40 41 52 43 33 42 44 47 54 49 42 46 47 40 53 32 34 54 26 39 54 22 37 26 47 54 31 54 53 53 17 49 47 33 47 34 42 46 18 41 47 32 27 33 52 53 40 39 29 32 32 42 45 52 32 32 39 32 36 41 34 25 46 11 14 51 31 47 53 53 31 32 31 43 42 31 45 43 36 42 31 43 33 51 31 42 31 51 37 32 43 31 33 31 31 43 47 47 28 48 15 22 37 32 36 25 48 29 31 30 31 32 28 35 25 30 31 42 22 23 47 33 30 30 31 20 25 43 31 42 31 41 42 23 30 31 37 48 31 31 27 32 27 32 21 27 21 32 30 31 27 31 31 48 48 30 23 37 28 12 20 39 26 31 41 31 31 31 39 31 23 16 21 17 25 18 38 17 22 18 30 33 35 18 25 13 33 29 17 5 14 22 18 43 31 29 38 20 44 21 26 15 18 16 25 31 25 11 48 48 31 16 23 47 29 34 47 30 14 30 27 37 31 34 32 31 17 43 8 19 31 31 27 19 15 25 31 32 21 12 22 20 11 37 32 27 19 19 11 20 12 5 5 5 5 5 5 6 5 6 3 18 14 21 11 5 5 5 4 5 27 8 7 14 7 9 7 27 16 25 21 16 8 28 20 28 8 9 7 27 13 16 10 27 11 30 6 5 20 9 8 15 6 18 15 6 23 6 23 6 26 16 13 16 15 13 10 10 25 8 8 11 24 11 12 21 10 4 6 7 7 23 6 3 1 2 7 5 11 7 4 8

Alignment Information

BAC End 1

BAC End 2

seq1: chr17_5499644_5500002
seq2: B6Ng01-344P21.b_364_616

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  50

seq1  TCTTCTTCTTCCTCTTCCTCCTCTTTCTCCTCCTCCTCCTCTTCCTCCTC  100
      |||||||||                                         
seq2  TCTTCTTCT-----------------------------------------  59

seq1  CTCCTCTTCCTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCTTCTTCTT  150
                |||||||||||||||||||||||                 
seq2  ----------TCCTCTTCCTCTTCCTCTTCCTC-----------------  82

seq1  CCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCCTCATCTTCTTCT  200
           ||||||| ||||| |||     ||||| ||| |||  ||||||||
seq2  -----TCCTCCTTCTCCTTCTC----CCTTCTCCCTTCTC-CCTTCTTCT  122

seq1  TCCTCTTTCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTTTTTTGAGAC  250
      |                      ||||| ||     |  ||||| |||||
seq2  T----------------------CTCCTTTT-----TGGTTTTTCGAGAC  145

seq1  AGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACTA  300
      ||||||||||||| ||||||| ||||| |||||||||||||||||||| |
seq2  AGGGTTTCTCTGTATAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCA  195

seq1  GGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGG  350
      |||||||||| |||||||||||  ||||||||||| ||||  ||||||||
seq2  GGCTGGCCTCGAACTCAGAAAT-GGCCTGCCTCTGTCTCCTGAGTGCTGG  244

seq1  GATTAAAGG  359
      |||||||||
seq2  GATTAAAGG  253

seq1: chr5_134991412_134992462
seq2: B6Ng01-344P21.g_68_1098 (reverse)

seq1  GCTCACGACCATCTG-TAATGGGATCTGATGCCCTCTTCTGTGTGTCTAA  49
      |||||||| |||||| |||||| ||||||||||||| ||||||||||| |
seq2  GCTCACGA-CATCTGTTAATGGAATCTGATGCCCTC-TCTGTGTGTCT-A  47

seq1  AGACAGCTACAGTGTACTTACACATAATAATAAATAAATCTTAAAAAAAA  99
      ||||||||||||||||| |||||      ||| ||| ||||        |
seq2  AGACAGCTACAGTGTAC-TACAC------ATATATATATCT-------CA  83

seq1  AAAAAAAAGAGTTGGCTTGGTTATGGTATCTGTTCACAGCAGTAAAACCC  149
      ||||||||||| |||||||||||||||||||| |||||||||| ||||||
seq2  AAAAAAAAGAG-TGGCTTGGTTATGGTATCTG-TCACAGCAGT-AAACCC  130

seq1  TAAAAGATAGGGTCCCTCAAAGGAATCCTCTCTTGGAGTCTTGGAGAGAC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAGATAGGGTCCCTCAAAGGAATCCTCTCTTGGAGTCTTGGAGAGAC  179

seq1  GTCTGTTAAAATGCAGGATGTTCTAAAGGTAAGTTCAATAGCCCATCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTAAAATGCAGGATGTTCTAAAGGTAAGTTCAATAGCCCATCTTG  229

seq1  TAGATAAACTTGTTAAAACTGAGGAAATAGACAACTCAATAGTTTCAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAACTTGTTAAAACTGAGGAAATAGACAACTCAATAGTTTCAGGA  279

seq1  AGTCCTAGAAATTGACAAGGCTCACTCTGGCCCTTCCTCCTAAGCTTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGAAATTGACAAGGCTCACTCTGGCCCTTCCTCCTAAGCTTCTA  329

seq1  CAAGCAGGCGAGTGCTCTCAGACAGGACAAGCTGCCTGGTAGAGGCCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGCGAGTGCTCTCAGACAGGACAAGCTGCCTGGTAGAGGCCCAA  379

seq1  ATCAACTGAGCTCGCTAACAGAGACACTTTCTAGGCTGCTGAGCTGGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGAGCTCGCTAACAGAGACACTTTCTAGGCTGCTGAGCTGGCTG  429

seq1  TAGGTTGTGCAGTGTGCCTGAGGTTTCCAGCTTTCAGGAGCCCCGTGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTGCAGTGTGCCTGAGGTTTCCAGCTTTCAGGAGCCCCGTGGGA  479

seq1  AGAGGTACTCCGTGCAGCCCAGAGCCCACCAGCCACCCACCTGCTCATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTCCGTGCAGCCCAGAGCCCACCAGCCACCCACCTGCTCATGC  529

seq1  TGTGCCTTCAGCAGGGCGATCTCCTTCTCCACCTCACAGATATGGCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTCAGCAGGGCGATCTCCTTCTCCACCTCACAGATATGGCTGGT  579

seq1  AGCCTTGGCTACTTCGGCTCTCTCCAAGTCGCGCTCAGCCAGCAGCTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTACTTCGGCTCTCTCCAAGTCGCGCTCAGCCAGCAGCTGTT  629

seq1  CAATGTGCTGCTGCTTCTCCTTCAGGGCCTCCTGCAGAGCTGTGGTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCTGCTGCTTCTCCTTCAGGGCCTCCTGCAGAGCTGTGGTGCCT  679

seq1  GAGATCTTCCGGGCATAGCGCGAAGAGGTCTCTGTGAGCTGCAGAGAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCCGGGCATAGCGCGAAGAGGTCTCTGTGAGCTGCAGAGAGTG  729

seq1  GGCATGGGCGAGACTCAAGATACTGTATCATATTGTGTTGTGTTGTGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGCGAGACTCAAGATACTGTATCATATTGTGTTGTGTTGTGTTG  779

seq1  TGTTGTGCTGTACTGAAGCTCAGCTTGCTCCCTCTGGCCTCACTAACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTGTACTGAAGCTCAGCTTGCTCCCTCTGGCCTCACTAACACA  829

seq1  GGATGAGAAGTCTTGTCCTTCTCTGTCAGTGCCCAGGATGCCCTAAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAAGTCTTGTCCTTCTCTGTCAGTGCCCAGGATGCCCTAAAGTC  879

seq1  ATTGCTGATTCACTCTCAAAGGCAACATGATGGCTGAGAGTCAGACTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGATTCACTCTCAAAGGCAACATGATGGCTGAGAGTCAGACTTCA  929

seq1  ACAGGGACCACAGACCAAGCTATACTGAAGTCCCTCTGCCAAACCCAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCACAGACCAAGCTATACTGAAGTCCCTCTGCCAAACCCAGGT  979

seq1  GGCCTCCTCTTCTCTCCTTACCTAGGATTCATGTGACAGCTCCTTGGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCTTCTCTCCTTACCTAGGATTCATGTGACAGCTCCTTGGAAT  1029

seq1  TC  1051
      ||
seq2  TC  1031

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BAC

BAC End Information

Alignment Information