BAC Information

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BAC

Clone NameB6Ng01-345K12
Chromosome5 (Build37)
Map Location 33,875,548 - 34,092,600
singlet/doubletdoublet
Overlap gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1
Upstream geneYes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream geneLOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345K12.bB6Ng01-345K12.g
ACCGA127786GA127787
length1,0761,062
definitionB6Ng01-345K12.b B6Ng01-345K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,091,540 - 34,092,600)(33,875,548 - 33,876,602)
sequence
gaattcacatagattcactcacctctgccccttccttctcaagtgctgag
atcaaaggtgtaagcctgccctccaaaactcaaaaaagaaagtgggaaca
tttttctaggaaaggtctcatactatatgccccaggccggcctcagatgt
ctgggtatcctcctgcttcagcatttctaaagttatttttatttctgtct
aaacacctgggccactaagatagctccaggagtaaaggtgctccacgttt
gacagcctgagctccatcccagaacccatgtaatagaagggaagagcgac
tcccagacgtctctccctgactcagctcatgtgtctctgtggcatgtgct
gccacccccttccaaataaatagatgtaaagtaaacgaataagttacaaa
tagtaataggtaccatataatgaatgtgtgtatcatactctaggcctgtt
tttattttttaagtgcctaggttgccatagattgtgtgatcctcctgcct
cagctagggcagggattacaggtaaacaccaccatccctgggccagtcag
tgtaccagcctgtgtttaagctcaaagcacactaaccattctcaaggtac
ctggagctgatgatcagttattcagtttactgacgggcatgcatgtgtat
actttatatatattgggtatatttttaatgtttattttatgtatgggtat
ttgaatgcatacctcatgcatgcaagtgcctatggagaccagaagagggt
gttaggtcccccataactggagttagaaagagttgtgagtggccatggga
atgttaggaactgaacgcaggtcctctgcagaagcagcaagtgctctttt
ccagcccttggaagatatttttgaaataccatctttgggaaatgcccttt
tagtgacttattgaaccgattttgctccagtcatgtttgcttgtggcacc
cagactttgttatctctccactaaacagagcacagaagggaaacaggttg
ggccatccattcacccttggcaggaaaaggtgcttggggcctgttgggtc
aggcaatgacagcaatgcccaagtaa
gaattctgtgagatgacagaaatgcagtacccaggatcgtgtctgctggg
aaatagctagagagaatggccgggggaagaactgcatgcagcagggctgg
tgactctccagagaagtgacagggaaggggagcacagcccatcagcagat
acattaggctcctcagggcagaagcacagtgaacggggaggttgggacac
ctgaaccagaggtggggggctctgtgtgtgggagtctccagaagagagga
ctcttcacctggtggggcctctaaatgctgagactctaagtgggaaagtc
tccaggaggagacgcccccagaaggggagtccagatatgggaatttccag
ggatatgggggtccccaggtttgggagggtctccagatgaaggaatgtcc
accacgttaaaggaggtgtccatgtgagagagtctccagtagaagggtgt
actgttagtttttgtcaactcagcataaattaaatcacctgggaaggagg
gggcttgagaaattaattccatagacaggccttcaggcctgcgggtcatg
taaagcagactgagcaagtcatggagagcaagccagcaagcagcactact
ccatcgttatctttgcttcagtccctgccttggctgccattggttatgaa
ctgcaacttataatctaaaataagcctttctggtagcagctggaaagacc
aactgtgaagtatagtaaccctgtttttcattttatttcttctccaggaa
tcttcccccaccgccaagtcgctttggtcagtattttatcacagcacaga
aagcaaattagaacaaggagtcagcctctgaccacgttgcttaagctgcc
cccaagggccccactttcaaaagtcccaagcttgggacaggcctaccctt
ccctacaccctgtcccagcccagttctttgggcagggactctggactgag
gagtaatgggtgaagggctcccctagaggaggaaggtctgtgaatctgag
gtctggtgtccagcctagtccttcaccatgggaaggtggtgctaagatct
ctggatgatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_34091540_34092600
seq2: B6Ng01-345K12.b_49_1124 (reverse)

seq1  TTAC-TGGGCA-TGCTGTCCTTGCCTGACCC-ACAG--CCCCAGCACC-T  44
      |||| |||||| ||||||| ||||||||||| ||||  ||| |||||| |
seq2  TTACTTGGGCATTGCTGTCATTGCCTGACCCAACAGGCCCCAAGCACCTT  50

seq1  CTCCTGC--AAGGTG-ATGGATG--CCCACCTGTTT-CCTTCTGTGGCTC  88
       ||||||  | |||| |||||||  || |||||||| |||||||| ||||
seq2  TTCCTGCCAAGGGTGAATGGATGGCCCAACCTGTTTCCCTTCTGT-GCTC  99

seq1  TGTTTAGTTGAGAGAT-ACAAAGTCTGGGTGCCACAAGCAAACATGACTG  137
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TGTTTAGTGGAGAGATAACAAAGTCTGGGTGCCACAAGCAAACATGACTG  149

seq1  GAGC-AAATCGGTTCAATAAGTCACTAAAA-GGCATTTCCCAAAGATGGT  185
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGCAAAATCGGTTCAATAAGTCACTAAAAGGGCATTTCCCAAAGATGGT  199

seq1  ATTTCAAAAATATCTTCCAAGGGCTGG-AAAGAGCACTTGCTGCTTCTGC  234
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTCAAAAATATCTTCCAAGGGCTGGAAAAGAGCACTTGCTGCTTCTGC  249

seq1  AGAGGACCTGCGTTCAGTTCCTAACATTCCCATGGCCACTCACAACTCTT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTGCGTTCAGTTCCTAACATTCCCATGGCCACTCACAACTCTT  299

seq1  TCTAACTCCAGTTATGGGGGACCTAACACCCTCTTCTGGTCTCCATAGGC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCCAGTTATGGGGGACCTAACACCCTCTTCTGGTCTCCATAGGC  349

seq1  ACTTGCATGCATGAGGTATGCATTCAAATACCCATACATAAAATAAACAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGCATGAGGTATGCATTCAAATACCCATACATAAAATAAACAT  399

seq1  TAAAAATATACCCAATATATATAAAGTATACACATGCATGCCCGTCAGTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATACCCAATATATATAAAGTATACACATGCATGCCCGTCAGTA  449

seq1  AACTGAATAACTGATCATCAGCTCCAGGTACCTTGAGAATGGTTAGTGTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATAACTGATCATCAGCTCCAGGTACCTTGAGAATGGTTAGTGTG  499

seq1  CTTTGAGCTTAAACACAGGCTGGTACACTGACTGGCCCAGGGATGGTGGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTTAAACACAGGCTGGTACACTGACTGGCCCAGGGATGGTGGT  549

seq1  GTTTACCTGTAATCCCTGCCCTAGCTGAGGCAGGAGGATCACACAATCTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTGTAATCCCTGCCCTAGCTGAGGCAGGAGGATCACACAATCTA  599

seq1  TGGCAACCTAGGCACTTAAAAAATAAAAACAGGCCTAGAGTATGATACAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACCTAGGCACTTAAAAAATAAAAACAGGCCTAGAGTATGATACAC  649

seq1  ACATTCATTATATGGTACCTATTACTATTTGTAACTTATTCGTTTACTTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTATATGGTACCTATTACTATTTGTAACTTATTCGTTTACTTT  699

seq1  ACATCTATTTATTTGGAAGGGGGTGGCAGCACATGCCACAGAGACACATG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTTATTTGGAAGGGGGTGGCAGCACATGCCACAGAGACACATG  749

seq1  AGCTGAGTCAGGGAGAGACGTCTGGGAGTCGCTCTTCCCTTCTATTACAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTCAGGGAGAGACGTCTGGGAGTCGCTCTTCCCTTCTATTACAT  799

seq1  GGGTTCTGGGATGGAGCTCAGGCTGTCAAACGTGGAGCACCTTTACTCCT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGGATGGAGCTCAGGCTGTCAAACGTGGAGCACCTTTACTCCT  849

seq1  GGAGCTATCTTAGTGGCCCAGGTGTTTAGACAGAAATAAAAATAACTTTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATCTTAGTGGCCCAGGTGTTTAGACAGAAATAAAAATAACTTTA  899

seq1  GAAATGCTGAAGCAGGAGGATACCCAGACATCTGAGGCCGGCCTGGGGCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTGAAGCAGGAGGATACCCAGACATCTGAGGCCGGCCTGGGGCA  949

seq1  TATAGTATGAGACCTTTCCTAGAAAAATGTTCCCACTTTCTTTTTTGAGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATGAGACCTTTCCTAGAAAAATGTTCCCACTTTCTTTTTTGAGT  999

seq1  TTTGGAGGGCAGGCTTACACCTTTGATCTCAGCACTTGAGAAGGAAGGGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGGCAGGCTTACACCTTTGATCTCAGCACTTGAGAAGGAAGGGG  1049

seq1  CAGAGGTGAGTGAATCTATGTGAATTC  1061
      |||||||||||||||||||||||||||
seq2  CAGAGGTGAGTGAATCTATGTGAATTC  1076

seq1: chr5_33875548_33876602
seq2: B6Ng01-345K12.g_69_1130

seq1  GAATTCTGTGAGATGACAGAAATGCAGTACCCAGGATCGTGTCTGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGATGACAGAAATGCAGTACCCAGGATCGTGTCTGCTGGG  50

seq1  AAATAGCTAGAGAGAATGGCCGGGGGAAGAACTGCATGCAGCAGGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTAGAGAGAATGGCCGGGGGAAGAACTGCATGCAGCAGGGCTGG  100

seq1  TGACTCTCCAGAGAAGTGACAGGGAAGGGGAGCACAGCCCATCAGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCCAGAGAAGTGACAGGGAAGGGGAGCACAGCCCATCAGCAGAT  150

seq1  ACATTAGGCTCCTCAGGGCAGAAGCACAGTGAACGGGGAGGTTGGGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGCTCCTCAGGGCAGAAGCACAGTGAACGGGGAGGTTGGGACAC  200

seq1  CTGAACCAGAGGTGGGGGGCTCTGTGTGTGGGAGTCTCCAGAAGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCAGAGGTGGGGGGCTCTGTGTGTGGGAGTCTCCAGAAGAGAGGA  250

seq1  CTCTTCACCTGGTGGGGCCTCTAAATGCTGAGACTCTAAGTGGGAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACCTGGTGGGGCCTCTAAATGCTGAGACTCTAAGTGGGAAAGTC  300

seq1  TCCAGGAGGAGACGCCCCCAGAAGGGGAGTCCAGATATGGGAATTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGAGACGCCCCCAGAAGGGGAGTCCAGATATGGGAATTTCCAG  350

seq1  GGATATGGGGGTCCCCAGGTTTGGGAGGGTCTCCAGATGAAGGAATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGGGGGTCCCCAGGTTTGGGAGGGTCTCCAGATGAAGGAATGTCC  400

seq1  ACCACGTTAAAGGAGGTGTCCATGTGAGAGAGTCTCCAGTAGAAGGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTTAAAGGAGGTGTCCATGTGAGAGAGTCTCCAGTAGAAGGGTGT  450

seq1  ACTGTTAGTTTTTGTCAACTCAGCATAAATTAAATCACCTGGGAAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGTTTTTGTCAACTCAGCATAAATTAAATCACCTGGGAAGGAGG  500

seq1  GGGCTTGAGAAATTAATTCCATAGACAGGCCTTCAGGCCTGCGGGTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGAGAAATTAATTCCATAGACAGGCCTTCAGGCCTGCGGGTCATG  550

seq1  TAAAGCAGACTGAGCAAGTCATGGAGAGCAAGCCAGCAAGCAGCACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGACTGAGCAAGTCATGGAGAGCAAGCCAGCAAGCAGCACTACT  600

seq1  CCATCGTTATCTTTGCTTCAGTCCCTGCCTTGGCTGCCATTGGTTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTTATCTTTGCTTCAGTCCCTGCCTTGGCTGCCATTGGTTATGAA  650

seq1  CTGCAACTTATAATCTAAAATAAGCCTTTCTGGTAGCAGCTGGAAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTTATAATCTAAAATAAGCCTTTCTGGTAGCAGCTGGAAAGACC  700

seq1  AACTGTGAAGTATAGTAACCCTGTTTTTCATTTTATTTCTTCTCCAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAAGTATAGTAACCCTGTTTTTCATTTTATTTCTTCTCCAGGAA  750

seq1  TCTTCCCCCACCGCCAAGTCGCTTTGGTCAGTATTTTATCACAGCAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTCCCCCACCGCCAAGTCGCTTTGGTCAGTATTTTATCACAGC-ACAG  799

seq1  AAAGCAAATTAGAACAAGGAGTCAGCCTCTGACCACGTTGCTTAAGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAATTAGAACAAGGAGTCAGCCTCTGACCACGTTGCTTAAGCTGC  849

seq1  CCCCAAGGGCCCCACTTTCAAAAGTCCCAAGCTT-GGACAGGCCTACCCT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCAAGGGCCCCACTTTCAAAAGTCCCAAGCTTGGGACAGGCCTACCCT  899

seq1  TCCCTACACCCTGTCCCAGCCCAG-TCCTTGGGCAGGGACTCTGGACTGA  948
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  TCCCTACACCCTGTCCCAGCCCAGTTCTTTGGGCAGGGACTCTGGACTGA  949

seq1  GGAGTAAT-GGTGAAGGGCT-CCCTAGA-GAGG-AGGTCTGTGAATCTGA  994
      |||||||| ||||||||||| ||||||| |||| ||||||||||||||||
seq2  GGAGTAATGGGTGAAGGGCTCCCCTAGAGGAGGAAGGTCTGTGAATCTGA  999

seq1  GGTCT-GTGTCCAGCCTAGCCCTTCAACAT-GGAAGGT-GTGCCAAGATC  1041
      ||||| ||||||||||||| |||||| ||| ||||||| |||| ||||||
seq2  GGTCTGGTGTCCAGCCTAGTCCTTCACCATGGGAAGGTGGTGCTAAGATC  1049

seq1  TCTGGGATGATATG  1055
      ||| ||||||||||
seq2  TCT-GGATGATATG  1062