BAC Information

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BAC

Clone NameB6Ng01-345K16
Chromosome5 (Build37)
Map Location 125,341,732 - 125,474,104
singlet/doubletdoublet
Overlap geneCcdc92, Zfp664
Upstream geneDenr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345K16.bB6Ng01-345K16.g
ACCGA127792GA127793
length3871,104
definitionB6Ng01-345K16.b B6Ng01-345K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,473,712 - 125,474,104)(125,341,732 - 125,342,832)
sequence
agccagagtggatactgttttcttctggaaggttccctggctgccgttta
ccccgcctcctggccttcctccctaggactccgtgctgtttttctggctt
ccttagtttggtgacattcgtgaggggaaaaaaaatattgcagtgggtag
gaaggtcttgctcaaaatccaaatggaagagaaaaacaagagcagagaag
gttagaaaataaagatagaaaagcctggctggaagctgtgaatgtagtta
tcccagggttggagaagcagaggaggtcatcctgggctacatagtaaatc
tgagaccaagcctgggctacaggaccatgtctcaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaagaggtggggagtgggattggggag
gaattctctatcctccaactcggagatccacctgcttctgtctctggaga
gctgaaattttaaggcgtgcgccatcacgcccggctgcttttaacactcc
taaaaggtgtctgcaagcctgtactttgttatgaaaccgaccggtgccac
ctgtcacagagcacggtcacattttcctctcccggctcccctctgtcatc
agtggcacctctctgtcatcagtgaactagaccgtgcagctaaagatact
tgaggttttgacactcttagcccgcagggccggatccagcccgagggaac
cgcaaccaggggtgctgcccgctacctgcgagcgtggccagcgtgcgcgt
ccgcgggtcccgggagctcagggcaaagagtacttacgcggagccacccg
gtcgccagagctgcaggtccgggaggcggcaggtgtgacgcgggcaggcg
gctgaggcccgcagcatcccgccggcttggggccggaccccggggcgctg
ccccgcacccgcaatgcggctcgtacccggcccgggccggcggttgcagc
cgttgcgccgcgcctcccccgccgcgccggtgcgcagcctggctccgagc
cccccgcgagcgaagctcaaggattctggacgtgcgcaggctgcgcgcct
cacctgccagggtccctcaggcggctgcggcgctcggcctgcttctcgcg
gtggcccgcggcccatgggcagggacggtgggagccgggtgcgcggcggc
cctgccgcggggggcacggagactcaagagacgccgcccggtcgtcgcat
cccgtccgctccctccgagcgctcgccgcggtgcacgccgggagccgttg
gctacccgactagtcctcgcacaggaggatgtctgaggagacggtgcggc
gctcgacacggcggtcggtctgctagtgatgggaggggaggactccgggc
cggattcgatgctcttttcttgcggaaggggaaagggggacgactgtcgt
ccacctccctgccggctgcgcaggtcaaggcaaggcaggatgcggaaagg
caaaatacaaaaacggatgttagttagcacacctcaaggctcactgctca
ggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125473712_125474104
seq2: B6Ng01-345K16.b_48_440 (reverse)

seq1  CTCCCCAATCCCACTCCCCACCTCTTTTTTTTTTTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAATCCCACTCCCCACCTCTTTTTTTTTTTTTTTTTTTTTTTTTT  50

seq1  TTTTGAGACATGGTCCTGTAGCCCAGGCTTGGTCTCAGATTTACTATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACATGGTCCTGTAGCCCAGGCTTGGTCTCAGATTTACTATGTA  100

seq1  GCCCAGGATGACCTCCTCTGCTTCTCCAACCCTGGGATAACTACATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGATGACCTCCTCTGCTTCTCCAACCCTGGGATAACTACATTCAC  150

seq1  AGCTTCCAGCCAGGCTTTTCTATCTTTATTTTCTAACCTTCTCTGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGCCAGGCTTTTCTATCTTTATTTTCTAACCTTCTCTGCTCTT  200

seq1  GTTTTTCTCTTCCATTTGGATTTTGAGCAAGACCTTCCTACCCACTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTTCCATTTGGATTTTGAGCAAGACCTTCCTACCCACTGCAA  250

seq1  TATTTTTTTTCCCCTCACGAATGTCACCAAACTAAGGAAGCCAGAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTCCCCTCACGAATGTCACCAAACTAAGGAAGCCAGAAAAAC  300

seq1  AGCACGGAGTCCTAGGGAGGAAGGCCAGGAGGCGGGGTAAACGGCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGAGTCCTAGGGAGGAAGGCCAGGAGGCGGGGTAAACGGCAGCCA  350

seq1  GGGAACCTTCCAGAAGAAAACAGTATCCACTCTGGCTGAATTC  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTCCAGAAGAAAACAGTATCCACTCTGGCTGAATTC  393

seq1: chr5_125341732_125342832
seq2: B6Ng01-345K16.g_65_1168

seq1  GAATTCTCTATCCTCCAACTCGGAGATCCACCTGCTTCTGTCTCTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCCTCCAACTCGGAGATCCACCTGCTTCTGTCTCTGGAGA  50

seq1  GCTGAAATTTTAAGGCGTGCGCCATCACGCCCGGCTGCTTTTAACACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATTTTAAGGCGTGCGCCATCACGCCCGGCTGCTTTTAACACTCC  100

seq1  TAAAAGGTGTCTGCAAGCCTGTACTTTGTTATGAAACCGACCGGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTGTCTGCAAGCCTGTACTTTGTTATGAAACCGACCGGTGCCAC  150

seq1  CTGTCACAGAGCACGGTCACATTTTCCTCTCCCGGCTCCCCTCTGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGAGCACGGTCACATTTTCCTCTCCCGGCTCCCCTCTGTCATC  200

seq1  AGTGGCACCTCTCTGTCATCAGTGAACTAGACCGTGCAGCTAAAGATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACCTCTCTGTCATCAGTGAACTAGACCGTGCAGCTAAAGATACT  250

seq1  TGAGGTTTTGACACTCTTAGCCCGCAGGGCCGGATCCAGCCCGAGGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTGACACTCTTAGCCCGCAGGGCCGGATCCAGCCCGAGGGAAC  300

seq1  CGCAACCAGGGGTGCTGCCCGCTACCTGCGAGCGTGGCCAGCGTGCGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACCAGGGGTGCTGCCCGCTACCTGCGAGCGTGGCCAGCGTGCGCGT  350

seq1  CCGCGGGTCCCGGGAGCTCAGGGCAAAGAGTACTTACGCGGAGCCACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGGTCCCGGGAGCTCAGGGCAAAGAGTACTTACGCGGAGCCACCCG  400

seq1  GTCGCCAGAGCTGCAGGTCCGGGAGGCGGCAGGTGTGACGCGGGCAGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCAGAGCTGCAGGTCCGGGAGGCGGCAGGTGTGACGCGGGCAGGCG  450

seq1  GCTGAGGCCCGCAGCATCCCGCCGGCTTGGGGCCGGACCCCGGGGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCCCGCAGCATCCCGCCGGCTTGGGGCCGGACCCCGGGGCGCTG  500

seq1  CCCCGCACCCGCAATGCGGCTCGTACCCGGCCCGGGCCGGCGGTTGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCACCCGCAATGCGGCTCGTACCCGGCCCGGGCCGGCGGTTGCAGC  550

seq1  CGTTGCGCCGCGCCTCCCCCGCCGCGCCGGTGCGCAGCCTGGCTCCGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCGCCGCGCCTCCCCCGCCGCGCCGGTGCGCAGCCTGGCTCCGAGC  600

seq1  CCCCCGCGAGCGAAGCTCAAGGATTCTGGACGTGCGCAGGCTGCGCGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCGAGCGAAGCTCAAGGATTCTGGACGTGCGCAGGCTGCGCGCCT  650

seq1  CACCTGCCAGGGTCCCTCAGGCGGCTGCGGCGCTCGGCCTGCTTCTCGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCAGGGTCCCTCAGGCGGCTGCGGCGCTCGGCCTGCTTCTCGCG  700

seq1  GTGGCCCGCGGCCCATGGGCAGGGACGGTGGGAGCCGGGTGCGCGGCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCGCGGCCCATGGGCAGGGACGGTGGGAGCCGGGTGCGCGGCGGC  750

seq1  CCTGCCGCGGGGGGCACGGAGACTCAAGAGACGCCGCCCGGTCGTCGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGCGGGGGGCACGGAGACTCAAGAGACGCCGCCCGGTCGTCGCAT  800

seq1  CCCGTCCGCTCCCTCCGAGCGCTCGCCGCGGTGCACGCCGGGAGCCGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCGCTCCCTCCGAGCGCTCGCCGCGGTGCACGCCGGGAGCCGTTG  850

seq1  GCTACCCGACTAGTCCTCGCACAGGAGGATGTCTGAGGAGACGGTGCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCGACTAGTCCTCGCACAGGAGGATGTCTGAGGAGACGGTGCGGC  900

seq1  GC-CGACACGGCGG-CGGTCTGCTAGTGATGGGAGGGGAGGAC-CCGGG-  946
      || ||||||||||| |||||||||||||||||||||||||||| ||||| 
seq2  GCTCGACACGGCGGTCGGTCTGCTAGTGATGGGAGGGGAGGACTCCGGGC  950

seq1  CGGA-TCGATGCTCTTT--CTGCGG-AGGGGAAA-GGGGACGAC--GCG-  988
      |||| ||||||||||||   ||||| |||||||| |||||||||   || 
seq2  CGGATTCGATGCTCTTTTCTTGCGGAAGGGGAAAGGGGGACGACTGTCGT  1000

seq1  CCA-CTCCCTG-CGGCTGCGGCAGGGCAAAGGCAAAGGCAAGGATGAAGG  1036
      ||| ||||||| ||||||| ||||| | ||||| ||||| ||||||   |
seq2  CCACCTCCCTGCCGGCTGC-GCAGGTC-AAGGC-AAGGC-AGGATG--CG  1044

seq1  GAAAGGGAAAAAAAAAAAAAAAAAAGGGATGTTAGTTAGCAACACGCAA-  1085
      ||||||       |||| | ||||| |||||||||||||||   | ||| 
seq2  GAAAGG------CAAAATACAAAAACGGATGTTAGTTAGCACACCTCAAG  1088

seq1  GCGCACTGCTCAGGTG  1101
      || |||||||||||||
seq2  GCTCACTGCTCAGGTG  1104