BAC Information

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BAC

Clone NameB6Ng01-345L24
Chromosome5 (Build37)
Map Location 39,937,661 - 39,938,837
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345L24.bB6Ng01-345L24.g
ACCGA127845GA127846
length1,1681,284
definitionB6Ng01-345L24.b B6Ng01-345L24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagccaaccggctacatattaagattctgcctcaataaaaatg
ataaatggcaatcactaacacacacacacacacacacacacacacacaca
cacacacacacaccaaaacaaacagaagatgaactattctgtggaaggaa
gaggacagtgagaggggaagatggtcaagacaggataatggggacacatg
tgagcagagctcaaggattcatggttttgagacgatcataatgacattca
ctattctgtaggataataaaagttgcaataaaaataataaataatgaaat
ccagtctcagacatgtttatttactacagatgacaatgttaaaaaaaaaa
aaaaggcagagcaagtgtcatgatcaattaatgtctaaatgagattagag
gatctgagttttaaaattagacttggcgataaaaagtacatttatcataa
atatttaacctccctcagcatggtggtgattagactactgaactagccac
ctgctggcctcccttctcctccttttgaggccatatgagaaagggattag
agtttaagaaaatgaaatactgtataaatgaccaacattttatttgaaat
gactataaaatgataccttttaaattgttgaactcataactctgccatct
atttaaaagccatagtggtcctgagaactatgaatgatcatgtgagatgt
ttatttcattctgcattcattctcttttccccatggggtgggtgaagaac
atttacaatctgggtccatccgtggctccttgagtatctacaatggcatg
caataccctctcagtgtcagcaccaggctcgagcatagggctttctgtgt
ttgcaagcttctgtgaaacccagaacaggttgtgatcaatctttccactt
ttcgaatgttctctttttgcttttcctcagaactctgtatatgacagttt
tctaaacacatagtggtatacagtctacttgcctcatctgcctgtcagag
tgagttaactgctgcacatgaatgtgcccacatgacacttttcagatcag
aatcatcagcttaccccctcctctccatgagtggagacccatgagtgaaa
ctagtgaactggggagaatattctggtagaacgactattactgatcagca
tagccaatccactaaaat
gaattcactgcagggtaatggttgaggatgattggttgaagattctgcaa
tcaaagtagtgaagatcagggataagaagccaagtctgtgtatacccaga
gctgttgacttccatagagaagacacagtgaagataattcaactgtagtc
cagagttatagttttaggagatatatttccataagtgcaatgctttattt
attttagtgtactgtaaatttgtgattgacatacctatcagttttacata
tttatgggctatagtgatatatatatatatatatatatatatatatatat
atatatatatatatttgtgtatatataactatatatactgattagaaaca
tcaaagaaagtctattgctgatattagaatgaatataaaagtaaatactg
atatacacctacatgtgggctgcggtgttacattgcttttacgattctgt
aagggagctcttgcaagattcactgcgtgctttatgcctgaatccacgtg
gctatttctggctatccttgcccctgtcttctgtaatttatgaaatacaa
atatttaacatacaactttaaacttactcacatagctctgctgctaatag
ctgctagttcaccatgaagagtaactcgtacgtgtggtttggaaatccca
aactcaaaattccttatactgaaaaatcatgagtatatcctgtgatatcc
tctgaaaggctacaagagtggtgaaaccactcacacaaaagaacagactg
taaatatcgtctctgttatgtaaatatacaatggagaagtcattctcaaa
gtattaaaggacctcactactgtccacggatctacatatgccctataaaa
aggacaaacagctggaagactccaattagtggaaggaagaaccggatgtg
tggtcctacactacaaatcgcattgtccaaaccaccggacagatactggc
ctcagtccacccccggttagagaagatctataccaagcagatcgttctga
agaaaccaagcttgtagctaccccttcatctcgactgaaccaaactattt
cttaactccagaagagatatcacaccatggttgtggaaatgcttctctct
ttctaaaggaataaagtgcaatcaaaaataaaagtcctcatcttcctcga
cactatctatatgggggcgctatgagaacaaaggaccacacatttttcca
gctataaaggcacaatactttttccataaaagatctcactaaatataaat
ccaccattgttgcgagagcaccctcacgtatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39937661_39938837
seq2: B6Ng01-345L24.b_48_1215 (reverse)

seq1  ATTTTAGT-GATTGCTAATGCTGATCAGTAATTATGTTCCATTTTCTACC  49
      |||||||| |||||   |||||||||||||||  |        |||||||
seq2  ATTTTAGTGGATTGGCTATGCTGATCAGTAATAGT------CGTTCTACC  44

seq1  AGATTATTCT-CCCAGTTTTCACTAGTTTCACTCATGTGTCTCCACTCAT  98
      ||| |||||| |||||  ||||||||||||||||||| ||||||||||||
seq2  AGAATATTCTCCCCAG--TTCACTAGTTTCACTCATGGGTCTCCACTCAT  92

seq1  GGGGGAGAGGGGGTAAGCTGATGGTTTTCTTGATCTGAAAAGTGTCATGT  148
      || |  ||||||||||||||||| ||    ||||||||||||||||||||
seq2  GGAGAGGAGGGGGTAAGCTGATGATT---CTGATCTGAAAAGTGTCATGT  139

seq1  GGGCACATTTCATGTGCAGCAGTTAACTCACTTCTGACAGGCAGATGAGG  198
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGCACA-TTCATGTGCAGCAGTTAACTCAC-TCTGACAGGCAGATGAGG  187

seq1  CAAGTAGACTGTATACCACTATGTGTTTAGAAAACTTGTCATATACAGAG  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGTAGACTGTATACCACTATGTGTTTAGAAAAC-TGTCATATACAGAG  236

seq1  TTCTGAGG-AAAGC-AAAAGAGAACATTCG-AAAGTGGAAAGATTGATCA  295
      |||||||| ||||| ||||||||||||||| |||||||||||||||||||
seq2  TTCTGAGGAAAAGCAAAAAGAGAACATTCGAAAAGTGGAAAGATTGATCA  286

seq1  CAACCTGTTCTGGGTTTCACAGAAGCTTGCAAACACAGAAAGCCCTATGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTTCTGGGTTTCACAGAAGCTTGCAAACACAGAAAGCCCTATGC  336

seq1  TCGAGCCTGGTGCTGACACTGAGAGGGTATTGCATGCCATTGTAGATACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCCTGGTGCTGACACTGAGAGGGTATTGCATGCCATTGTAGATACT  386

seq1  CAAGGAGCCACGGATGGACCCAGATTGTAAATGTTCTTCACCCACCCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCCACGGATGGACCCAGATTGTAAATGTTCTTCACCCACCCCAT  436

seq1  GGGGAAAAGAGAATGAATGCAGAATGAAATAAACATCTCACATGATCATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAGAGAATGAATGCAGAATGAAATAAACATCTCACATGATCATT  486

seq1  CATAGTTCTCAGGACCACTATGGCTTTTAAATAGATGGCAGAGTTATGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTCAGGACCACTATGGCTTTTAAATAGATGGCAGAGTTATGAG  536

seq1  TTCAACAATTTAAAAGGTATCATTTTATAGTCATTTCAAATAAAATGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATTTAAAAGGTATCATTTTATAGTCATTTCAAATAAAATGTTG  586

seq1  GTCATTTATACAGTATTTCATTTTCTTAAACTCTAATCCCTTTCTCATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTATACAGTATTTCATTTTCTTAAACTCTAATCCCTTTCTCATAT  636

seq1  GGCCTCAAAAGGAGGAGAAGGGAGGCCAGCAGGTGGCTAGTTCAGTAGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAAAGGAGGAGAAGGGAGGCCAGCAGGTGGCTAGTTCAGTAGTC  686

seq1  TAATCACCACCATGCTGAGGGAGGTTAAATATTTATGATAAATGTACTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCACCATGCTGAGGGAGGTTAAATATTTATGATAAATGTACTTT  736

seq1  TTATCGCCAAGTCTAATTTTAAAACTCAGATCCTCTAATCTCATTTAGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCCAAGTCTAATTTTAAAACTCAGATCCTCTAATCTCATTTAGAC  786

seq1  ATTAATTGATCATGACACTTGCTCTGCCTTTTTTTTTTTTTTAACATTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGATCATGACACTTGCTCTGCCTTTTTTTTTTTTTTAACATTGT  836

seq1  CATCTGTAGTAAATAAACATGTCTGAGACTGGATTTCATTATTTATTATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAGTAAATAAACATGTCTGAGACTGGATTTCATTATTTATTATT  886

seq1  TTTATTGCAACTTTTATTATCCTACAGAATAGTGAATGTCATTATGATCG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCAACTTTTATTATCCTACAGAATAGTGAATGTCATTATGATCG  936

seq1  TCTCAAAACCATGAATCCTTGAGCTCTGCTCACATGTGTCCCCATTATCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACCATGAATCCTTGAGCTCTGCTCACATGTGTCCCCATTATCC  986

seq1  TGTCTTGACCATCTTCCCCTCTCACTGTCCTCTTCCTTCCACAGAATAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGACCATCTTCCCCTCTCACTGTCCTCTTCCTTCCACAGAATAGT  1036

seq1  TCATCTTCTGTTTGTTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCTGTTTGTTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1086

seq1  TGTGTGTGTGTGTGTTAGTGATTGCCATTTATCATTTTTATTGAGGCAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTAGTGATTGCCATTTATCATTTTTATTGAGGCAGA  1136

seq1  ATCTTAATATGTAGCCGGTTGGCTTGGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  ATCTTAATATGTAGCCGGTTGGCTTGGAATTC  1168