BAC Information

Click to search

BAC

Clone NameB6Ng01-345M13
Chromosome5 (Build37)
Map Location 119,503,216 - 119,658,348
singlet/doubletdoublet
Overlap geneEG665194
Upstream geneTesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2, LOC100039488
Downstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M13.bB6Ng01-345M13.g
ACCGA127869GA127870
length6381,153
definitionB6Ng01-345M13.b B6Ng01-345M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,657,711 - 119,658,348)(119,503,216 - 119,504,364)
sequence
gaattcttttatttctcaggaccacagtcatttccgctgtaaaacaggga
ttctgactcctcagagtctggtggataaacatggaaagaacatctcatgt
tgagtaagcaagcatccagtgagctgccgcctccgctgctaccacggaga
cgggaggggtgcatggaggacagggccgggggtcagaggtgttcagctga
ggctcagcctcccacatattcacgatatggtttctctccaggtgtcatct
taactgcaagttcaaggtcaggggcagaagtcaagtttgtgcagacagtt
cccgaagcctgagctcaggagtgacgtccagaccaaaatcacagcagagc
agtagaggacacacacacacacagagacacacagacacacacacatgcac
accaacacactactacagggaagaggcccactcactttgcagaaaacctg
agacttttagtttttaatgtaatttatttactgttttacctcttagagtc
caaatgggttcatgcaccaaatgctgttagctcgttagttaactgacaaa
agcttcgttgaactgggaaggagttccctctgcttttggccatgacatgc
agtgttctgctgtttcttggagtgtgtgcatgtgtgtg
gaattctacacagccttgaaaagggagctgctataatgcacagtggccaa
gactcgtcccacagagagggtgaagggtgaagctggatagatctattcag
ataaagcttaaaacttgaaaacctaacagctgccgaacagttagtgaggg
aaacccctctctctggacaaagaaggaacataattctgattttcctagag
acctcgtgtctcttcacttctagtctttaactggtaagggaaggttttgg
gtttggtgcctcagcacataccactgctggaccctcagcgatattttcag
gaatggtcatgtgactcaaaggcagtccaagcactgactgctaccccacc
cccacccccattccgagagtcacacacaatggaatcaagactcctggaac
ttacaagggagaacttagagaatgaataggagcccggtgagccactggga
gctgtgcggacacacctggagaggaggtatatcaaaatcagcatggctgg
gacacagagaggggccaatcttagccaacccgagctgatttcccgcatct
gcctgctccatcatccacgtcagcaggaccacactcctggtaggtgtgag
ctgctgtgaccgtgacccctattctaactgggctccagaaaccttccatt
ttctggtaagcagtaccactgagaacagattctgggtactggtacaaccc
agtgggttttaattcccactccgccccctataggtaagggagggaatggc
gtgaggcagggagctgcactgaggagaaacaagagccattattatttctc
ctgtctggaggggatctgagcgagcctcactcgatgccacaggacccacc
ttcgacagtgcctctcccacccttaccccctcacctgtcattttccctcc
tagatctatacctcttcttgcatagagtgggcatatccctctgcaggata
agtctcgctgttaatactccctcaaggacgtcttgtgtccattttctggg
acttcgatggtactttggccttttagtgttgttgatttgagtggagtctt
actcttgtgtgctagcctgctagatcaccacctaagtctgctagcttcaa
atccacacgcccactctttatgttcggacctcctaagtgctaggcctctc
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119657711_119658348
seq2: B6Ng01-345M13.b_49_686 (reverse)

seq1  CACACACATGCACACACTCCAAGAAACAGCAGAACACTGCATGTCATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGCACACACTCCAAGAAACAGCAGAACACTGCATGTCATGGC  50

seq1  CAAAAGCAGAGGGAACTCCTTCCCAGTTCAACGAAGCTTTTGTCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAGGGAACTCCTTCCCAGTTCAACGAAGCTTTTGTCAGTTAA  100

seq1  CTAACGAGCTAACAGCATTTGGTGCATGAACCCATTTGGACTCTAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGAGCTAACAGCATTTGGTGCATGAACCCATTTGGACTCTAAGAGG  150

seq1  TAAAACAGTAAATAAATTACATTAAAAACTAAAAGTCTCAGGTTTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTAAATAAATTACATTAAAAACTAAAAGTCTCAGGTTTTCTGC  200

seq1  AAAGTGAGTGGGCCTCTTCCCTGTAGTAGTGTGTTGGTGTGCATGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTGGGCCTCTTCCCTGTAGTAGTGTGTTGGTGTGCATGTGTGT  250

seq1  GTGTCTGTGTGTCTCTGTGTGTGTGTGTGTCCTCTACTGCTCTGCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGTCTCTGTGTGTGTGTGTGTCCTCTACTGCTCTGCTGTGA  300

seq1  TTTTGGTCTGGACGTCACTCCTGAGCTCAGGCTTCGGGAACTGTCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCTGGACGTCACTCCTGAGCTCAGGCTTCGGGAACTGTCTGCAC  350

seq1  AAACTTGACTTCTGCCCCTGACCTTGAACTTGCAGTTAAGATGACACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGACTTCTGCCCCTGACCTTGAACTTGCAGTTAAGATGACACCTG  400

seq1  GAGAGAAACCATATCGTGAATATGTGGGAGGCTGAGCCTCAGCTGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACCATATCGTGAATATGTGGGAGGCTGAGCCTCAGCTGAACAC  450

seq1  CTCTGACCCCCGGCCCTGTCCTCCATGCACCCCTCCCGTCTCCGTGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCCCCGGCCCTGTCCTCCATGCACCCCTCCCGTCTCCGTGGTAG  500

seq1  CAGCGGAGGCGGCAGCTCACTGGATGCTTGCTTACTCAACATGAGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGAGGCGGCAGCTCACTGGATGCTTGCTTACTCAACATGAGATGTT  550

seq1  CTTTCCATGTTTATCCACCAGACTCTGAGGAGTCAGAATCCCTGTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGTTTATCCACCAGACTCTGAGGAGTCAGAATCCCTGTTTTAC  600

seq1  AGCGGAAATGACTGTGGTCCTGAGAAATAAAAGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAAATGACTGTGGTCCTGAGAAATAAAAGAATTC  638

seq1: chr5_119503216_119504364
seq2: B6Ng01-345M13.g_67_1219

seq1  GAATTCTACACAGCCTTGAAAAGGGAGCTGCTATAATGCACAGTGGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAGCCTTGAAAAGGGAGCTGCTATAATGCACAGTGGCCAA  50

seq1  GACTCGTCCCACAGAGAGGGTGAAGGGTGAAGCTGGATAGATCTATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTCCCACAGAGAGGGTGAAGGGTGAAGCTGGATAGATCTATTCAG  100

seq1  ATAAAGCTTAAAACTTGAAAACCTAACAGCTGCCGAACAGTTAGTGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTAAAACTTGAAAACCTAACAGCTGCCGAACAGTTAGTGAGGG  150

seq1  AAACCCCTCTCTCTGGACAAAGAAGGAACATAATTCTGATTTTCCTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTCTCTCTGGACAAAGAAGGAACATAATTCTGATTTTCCTAGAG  200

seq1  ACCTCGTGTCTCTTCACTTCTAGTCTTTAACTGGTAAGGGAAGGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTGTCTCTTCACTTCTAGTCTTTAACTGGTAAGGGAAGGTTTTGG  250

seq1  GTTTGGTGCCTCAGCACATACCACTGCTGGACCCTCAGCGATATTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGCCTCAGCACATACCACTGCTGGACCCTCAGCGATATTTTCAG  300

seq1  GAATGGTCATGTGACTCAAAGGCAGTCCAAGCACTGACTGCTACCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTCATGTGACTCAAAGGCAGTCCAAGCACTGACTGCTACCCCACC  350

seq1  CCCACCCCCATTCCGAGAGTCACACACAATGGAATCAAGACTCCTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCATTCCGAGAGTCACACACAATGGAATCAAGACTCCTGGAAC  400

seq1  TTACAAGGGAGAACTTAGAGAATGAATAGGAGCCCGGTGAGCCACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGGAGAACTTAGAGAATGAATAGGAGCCCGGTGAGCCACTGGGA  450

seq1  GCTGTGCGGACACACCTGGAGAGGAGGTATATCAAAATCAGCATGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCGGACACACCTGGAGAGGAGGTATATCAAAATCAGCATGGCTGG  500

seq1  GACACAGAGAGGGGCCAATCTTAGCCAACCCGAGCTGATTTCCCGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGAGGGGCCAATCTTAGCCAACCCGAGCTGATTTCCCGCATCT  550

seq1  GCCTGCTCCATCATCCACGTCAGCAGGACCACACTCCTGGTAGGTGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCCATCATCCACGTCAGCAGGACCACACTCCTGGTAGGTGTGAG  600

seq1  CTGCTGTGACCGTGACCCCTATTCTAACTGGGCTCCAGAAACCTTCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGACCGTGACCCCTATTCTAACTGGGCTCCAGAAACCTTCCATT  650

seq1  TTCTGGTAAGCAGTACCACTGAGAACAGATTCTGGGTACTGGTACAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAAGCAGTACCACTGAGAACAGATTCTGGGTACTGGTACAACCC  700

seq1  AGTGGGTTTTAATTCCCACTCCGCCCCCTATAGGTAAGGGAGGGAATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTTAATTCCCACTCCGCCCCCTATAGGTAAGGGAGGGAATGGC  750

seq1  GTGAGGCAGGGAGCTGCACTGAGGAGAAACAAGAGCCATTATTATTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGGGAGCTGCACTGAGGAGAAACAAGAGCCATTATTATTTCTC  800

seq1  CTGTCTGGAGGGGATCTGAGCGAGCCTCACTCGATGCCACAGGACCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGAGGGGATCTGAGCGAGCCTCACTCGATGCCACAGGACCCACC  850

seq1  TTCGACAGTGCCTCTCCCACCCTTACCCCCTCACCTGTCATTTTCCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACAGTGCCTCTCCCACCCTTACCCCCTCACCTGTCATTTTCCCTCC  900

seq1  TAGATCTATACCTCTTCTTGCATAGAGTGGGCATATCCCTCTGCAGGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTATACCTCTTCTTGCATAGAGTGGGCATATCCCTCTGCAGGATA  950

seq1  AGTCTCGCTGTTAATAC-CCCTCAAGGACGTC-TGTGTCCA-TTTCT-GG  996
      ||||||||||||||||| |||||||||||||| |||||||| ||||| ||
seq2  AGTCTCGCTGTTAATACTCCCTCAAGGACGTCTTGTGTCCATTTTCTGGG  1000

seq1  AC-TCGATGGTACTTTGGCCTTTTAGTGTTGTTGGTTTTGAGTTGGAGTC  1045
      || |||||||||||||||||||||||||||||| | |||||| |||||||
seq2  ACTTCGATGGTACTTTGGCCTTTTAGTGTTGTT-GATTTGAG-TGGAGTC  1048

seq1  TTACTC-TGTGTGCCTAGGCTGGCCTAGAATTCACCACTTAGTTCTGGCT  1094
      |||||| |||||| |||| |||  |||||  ||||||| ||  ||| |||
seq2  TTACTCTTGTGTG-CTAGCCTG--CTAGA--TCACCACCTAAGTCT-GCT  1092

seq1  AGCTTCAAATCCACA--GCCACTCTTTTATG-TCAGA-CTCTCTAGTGCT  1140
      |||||||||||||||   |||||| |||||| || || |||   ||||||
seq2  AGCTTCAAATCCACACGCCCACTC-TTTATGTTCGGACCTCCTAAGTGCT  1141

seq1  AGG---CTCATA  1149
      |||   ||||||
seq2  AGGCCTCTCATA  1153