BAC Information

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BAC

Clone NameB6Ng01-346A12
Chromosome5 (Build37)
Map Location 136,024,273 - 136,025,483
singlet/doubletsinglet
Overlap genenone
Upstream geneClip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346A12.bB6Ng01-346A12.g
ACCGA128049GA128050
length1,1961,193
definitionB6Ng01-346A12.b B6Ng01-346A12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactacatatatgcatctaccagactggcctcaaactcacaaagg
tctgttgggagtagcatttttgtgcactgtgtgaaggcgtgtctcttttc
ttcctcacctgcctaaggcattctctgattggctttaatgaagagctgat
ggcctatagctaggcgagaaaaggaagggagacttggggcagagagaggg
ttactgggagaagtatcaggcagggggttgggaaaagaagtcagtcatac
aaggactgagtgggaggtaattagccacgtggcaaacatggattagaata
aacgggttaattaagttatatgagctaattgggaggtagcaagctagggc
ctaaacgttccataaataaataaataaacaaatagaaatttccgtgtcat
tattcaggagctggcgggtgggggcagtcaggtgatagagatctgcctgc
ctctgcccttcttggattaaaggcatgtgccatcatgcctggattacttt
ttaaaaccattattacatttatttattttgtgtgtatacacacgtgtgtg
aatgttcatgtatgtgtgcgtgtgtgcaccatgatgcacatgtgtgagag
tgttcatgtgtgtgtgtgcaccatgatgcacatgtgtgaatgttcatgtg
tgtgtgtgtatgtttgtgtgcactgtggggctttgggctatgcacagaca
ggctggtctctagttgagctgaggtctgaaccccgcccggaagggtgata
attcacctacatgataaggtaggcgttccctcatgctcctggaactgtgg
ctcctgcctaagttaccactccccacaggccccacaagagaagcatgtgc
tagaagtcagcaggcaatggcccaagcttctgaccttcaggctaaactcc
tcctcagttacctagcaacagtaaagaccataaaaaggggctgcttgggc
ctctctctctactcctctctctctactctcactctcacgtctcactcctc
tctctttgtctctctcatctctcactctctctctcccttgtcttctctca
tctctcactcctctcatctcttcattgcttctccctctcctctctacctt
ttcgctgactcctctctctagcttgcatttccctcctccttaacgtgcca
ttccgtcatcataaaaagctccaaaacctagtgaaatgtctctgac
gaattccacactggtcttatgctctgggatcagctaaagacagatttagg
cctccttgttcagattttatggcatcaataaacatcagtctcttaaacaa
ggattaagggctcagcctagttcttatttgagtaaaccagagtgggaagg
agaaatttgtggtttggaggcactgggccgggaaagattcaagacagtta
gttttcctgtgaaatagaacaggtcaaaaagaagggaccatggctcgggg
tgggggatgcagctcatttgtcagcgtgcttgtctaagcatccaggaaga
cctggattccatccccagcaccccataaacctggcacagtttggtgctct
gtgcctgtcatcccagtactcagaagacaggggcaggaggctacatagca
agttctagaccagcctcagctacatgagaccagcgaaatataataagaca
ggagcaggcagcaagatggcttggagctaaaaggcacttgccacccgact
tgccagtgtgggtttgattcctgagatccacatgaagaacaagaaaactg
agtcctgcaagttgctgtctaacctccacatgggtaaacacatgtgtgca
tgtgtgttcacgcgtgcacgcgcacccacacaattaatgtaagtttgaag
agagaattcggttgcggttcagagttaagctccctgtactcaggtcaagc
agcttataaccgcctctaactcgagctccaaggaaccatacagtatattc
ctttctggctcccaggtacccgtgtacgcacgcaatgggcaaagcgtccc
aattagtttagatctatttaccatatataagtctggtttgaagatatcta
caggtctcagttggggtctgcagagtcctggctaggatacccaggttctt
gcgtctcaaagcattgaaccaggtcacctggagagcagagaaacagaaac
tgtttattttctaagaaagacagacatgcagtggaaagggagggtccagc
aagctggggaagacagagcaaagcccctgggtcttttcttttttctcttt
ctcttcttttttttacaaaaaaggtttcttttcttttttttctgcagtta
gccttattatgcacaaattcatagtgtttccatgaacctattaatgccta
tcctaattcaaagaacaaatgttttatcaaaaaaccaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136024273_136025483
seq2: B6Ng01-346A12.g_67_1259

seq1  GAATTCCACACTGGTCTTATGCTCTGGGATCAGCTAAAGACAGATTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTGGTCTTATGCTCTGGGATCAGCTAAAGACAGATTTAGG  50

seq1  CCTCCTTGTTCAGATTTTATGGCATCAATAAACATCAGTCTCTTAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGTTCAGATTTTATGGCATCAATAAACATCAGTCTCTTAAACAA  100

seq1  GGATTAAGGGCTCAGCCTAGTTCTTATTTGAGTAAACCAGAGTGGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGGGCTCAGCCTAGTTCTTATTTGAGTAAACCAGAGTGGGAAGG  150

seq1  AGAAATTTGTGGTTTGGAGGCACTGGGCCGGGAAAGATTCAAGACAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGTGGTTTGGAGGCACTGGGCCGGGAAAGATTCAAGACAGTTA  200

seq1  GTTTTCCTGTGAAATAGAACAGGTCAAAAAGAAGGGACCATGGCTCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGTGAAATAGAACAGGTCAAAAAGAAGGGACCATGGCTCGGGG  250

seq1  TGGGGGATGCAGCTCATTTGTCAGCGTGCTTGTCTAAGCATCCAGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATGCAGCTCATTTGTCAGCGTGCTTGTCTAAGCATCCAGGAAGA  300

seq1  CCTGGATTCCATCCCCAGCACCCCATAAACCTGGCACAGTTTGGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTCCATCCCCAGCACCCCATAAACCTGGCACAGTTTGGTGCTCT  350

seq1  GTGCCTGTCATCCCAGTACTCAGAAGACAGGGGCAGGAGGCTACATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTCATCCCAGTACTCAGAAGACAGGGGCAGGAGGCTACATAGCA  400

seq1  AGTTCTAGACCAGCCTCAGCTACATGAGACCAGCGAAATATAATAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGACCAGCCTCAGCTACATGAGACCAGCGAAATATAATAAGACA  450

seq1  GGAGCAGGCAGCAAGATGGCTTGGAGCTAAAAGGCACTTGCCACCCGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCAGCAAGATGGCTTGGAGCTAAAAGGCACTTGCCACCCGACT  500

seq1  TGCCAGTGTGGGTTTGATTCCTGAGATCCACATGAAGAACAAGAAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGTGGGTTTGATTCCTGAGATCCACATGAAGAACAAGAAAACTG  550

seq1  AGTCCTGCAAGTTGCTGTCTAACCTCCACATGGGTAAACACATGTGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCAAGTTGCTGTCTAACCTCCACATGGGTAAACACATGTGTGCA  600

seq1  TGTGTGTTCACGCGTGCACGCGCACCCACACAATTAATGTAAGTTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCACGCGTGCACGCGCACCCACACAATTAATGTAAGTTTGAAG  650

seq1  AGAGAATTCGGTTGCGGTTCAGAGTTAAGCTCCCTGTACTCAGGTCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCGGTTGCGGTTCAGAGTTAAGCTCCCTGTACTCAGGTCAAGC  700

seq1  AGCTTATAACCGCCTCTAACTCGAGCTCCAAGGAACCATACAGTATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATAACCGCCTCTAACTCGAGCTCCAAGGAACCATACAGTATATTC  750

seq1  CTTTCTGGCTCCCAGGTACCCGTGTACGCACGCAATGGGCAAAGCGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGCTCCCAGGTACCCGTGTACGCACGCAATGGGCAAAGCGTCCC  800

seq1  AATTAGTTTAGATCTATTTACCATATATAAGTCTGGTTTGAAGATATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTAGATCTATTTACCATATATAAGTCTGGTTTGAAGATATCTA  850

seq1  CAGGTCTCAGTTGGGGTCTGCAGAGTCCTGGCTAGGATACCCAGGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCAGTTGGGGTCTGCAGAGTCCTGGCTAGGATACCCAGGTTCTT  900

seq1  GCGTCTCAAAGCATTGAACCAGGGTCACCTGGAGAGCAAGAGAAACAGAA  950
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GCGTCTCAAAGCATTGAACCA-GGTCACCTGGAGAGC-AGAGAAACAGAA  948

seq1  ACTGTTTA-TTTCTAAGAAAGACAGACATGCAGTGGAAAGGGAGGGGCCA  999
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGTTTATTTTCTAAGAAAGACAGACATGCAGTGGAAAGGGAGGGTCCA  998

seq1  GCAAGCTGGGGAAGAACAGAAGCCAAAGCCCCTGGGTCTTTTTCTTTTTT  1049
      |||||||||||||| |||||   ||||||||||||||| |||||||||  
seq2  GCAAGCTGGGGAAG-ACAGA--GCAAAGCCCCTGGGTC-TTTTCTTTT--  1042

seq1  TCTTCTTTTTCTTCTTCCTTTTTTTAACCAAAAAAAGTTTTCTTTTTCTT  1099
        |||| |||| ||||| ||||||||  ||||||| ||||   |||||||
seq2  --TTCTCTTTC-TCTTCTTTTTTTTA--CAAAAAAGGTTT--CTTTTCTT  1085

seq1  TTTTTTTCTTGCAG-TAGCTTTATTAATTGCACAAAATCATAGTGTTTTT  1148
      ||||||   ||||| |||| ||||||  |||||||| |||||||||||  
seq2  TTTTTT--CTGCAGTTAGCCTTATTA--TGCACAAATTCATAGTGTTT--  1129

seq1  CCCCATTTAAACATATT-ATG-CTATCCTAATCCAAAAGACAAATG-TTT  1195
        |||  | ||| |||| ||| |||||||||| ||||  ||||||| |||
seq2  --CCA--TGAACCTATTAATGCCTATCCTAATTCAAAGAACAAATGTTTT  1175

seq1  ATCAAAAA--CAAAGGGA  1211
      ||||||||  ||||||||
seq2  ATCAAAAAACCAAAGGGA  1193