BAC Information

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BAC

Clone NameB6Ng01-346C05
Chromosome5 (Build37)
Map Location 99,080,753 - 99,081,766
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346C05.bB6Ng01-346C05.g
ACCGA128124GA128125
length1,0861,061
definitionB6Ng01-346C05.b B6Ng01-346C05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaaaatgcttaatttttattcaatatttcttccctagcccag
agatcattgagtgtggagagccctgtcatgagcaattaccattataagat
ggtgctggcttccactgcgcctaagtagtaaacaagccttatgagcaagt
gcaagagtgaattcacatccagtcactgcccatctcggggcgtagtaatg
gggtgatgggtgagcaactaatcaggtgctgtcacgtcacatcaggtgct
gaaacgtcacgctgcgggctatataagaagcgccattttccgagctcggg
atcttccttatgttgaagcaataaaagctttgcggtagaaggatccggtt
gtcaggtgaattcttgacggcgagatactagctcgggcgagaattgagta
caaagttgttcagtttccacaagagtgtatgttttcctgtgtttctattg
ttgttgaaatccatctttaattcatggtgatctgataggacacaggcatt
acttcattatctagtatctgttgaggctcactttgtgattgtaaactttg
gagaaggatccaagaggtgctgagaaacagtatattcttttgtgtttgtg
tgaaaagttctgtgcatgtctattaagtccttttgattcataacatcagt
taatttcattatttctctgtttagtttttgccctgatgagctgttgagag
tctggtgttgaagtctctgactattaatgtatggggtttgatgtgttatt
taagctttagcaatgtctcttttacaaagtgggtgctccttgtgtttggg
ccataggattcagaatagaaatatcatcttggtggatttttcttttgatt
agtatgtaatgttcttccctatctcttctgattaattttgattaaaagtc
tatttttactgaatattagaatggttatgccagcttgcttcttgagtcat
tagcttggaaaccctttccagcccttactttgaagaattgtttatctcct
gttgctgagatatgtgttttgtatgcagcaaaatagatggaatctgtcta
agaactccactctgttagcctggtgcctttttctgg
gaattctgtggagtgaatacaaagggttcacggaggccttgaatagacca
tatcagcagaaaaacagaaatactgccaactttatttgacaggaacaaat
gaaaggatactgtccaaaaaacaaacaaacaaaacaaagccaaaacgaaa
ccaaaacaaaacaaacaaacaaacaaaaaataaccaaaacccagtccaat
tttattggtgctgtcattcagtctgctttctgccattttaacaaattatc
caggagatcaatttataatgaggaagggtttattttggcgcaggtgttaa
agatttctgtctgtgtcagttgggctttcttgttttggagcctttctgca
aagtggcttactccatagcttgacaccagaaaaaggaaaaaaagaccaga
gtgcccaagctctttaaggacatacctccaaaatgacctagaggatctca
ccagtcaccatcacttaaaatactttgccatcttccaatagttccaagga
ctccttttaatacaagtgttggaaggcaattaagatcaagttaaggcgtg
gtgatacagcttagtatgtagagtgctaagatagcatgttcaaggatatc
agagacattaaagtaaaaggaaacaaatttaaaaaaactacagcaggcag
gaaacagaccaatagctcagctgcaaaggcggcactacatttcattaaag
caagggtggtgtagaaagactctgagaaaataagagccttagagatttaa
ttccaactcttgcaaacaaatcgagatgctcccatttgcctagatgggac
acagacatgctttgaattagagaccgcttttcatcttttattcccatttt
gaggaaccagaatgctctaatgtagtcttatgcttgcataaatattttat
gttgggggtattgtgggataggaatttgtctctaatttttacacatccgc
agaaaagaattttgcccaggattttgtgaataaatatatatagatgtaca
tctgtacttgattagatgatgagattgtgagctacagctgagctgaccag
cagacttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99080753_99081766
seq2: B6Ng01-346C05.g_124_1127 (reverse)

seq1  ACAGAAGTCTTGCTGGTTCCAGCCTCAGCTGTAGCTCACAATCTCATCAT  50
      ||||||||| |||||||  ||| |||||||||||||||||||||||||||
seq2  ACAGAAGTC-TGCTGGT--CAG-CTCAGCTGTAGCTCACAATCTCATCAT  46

seq1  CTAAATCAAGTACAGATGTACATCCTTATATATAATTTATTCACATAATT  100
      || |||||||||||||||||||||  ||||||| ||||||||||| || |
seq2  CT-AATCAAGTACAGATGTACATC--TATATAT-ATTTATTCACA-AAAT  91

seq1  CCTGGGGCAAAATTCTTTTCTGCGGATGTGTAAAAATTAGAGACAAATTC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-GGGCAAAATTCTTTTCTGCGGATGTGTAAAAATTAGAGACAAATTC  140

seq1  CTATCCCACAATACCCCCAACATAAAATATTTATGCAAGCATAAGACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCACAATACCCCCAACATAAAATATTTATGCAAGCATAAGACTAC  190

seq1  ATTAGAGCATTCTGGTTCCTCAAAATGGGAATAAAAGATGAAAAGCGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCATTCTGGTTCCTCAAAATGGGAATAAAAGATGAAAAGCGGTC  240

seq1  TCTAATTCAAAGCATGTCTGTGTCCCATCTAGGCAAATGGGAGCATCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAAAGCATGTCTGTGTCCCATCTAGGCAAATGGGAGCATCTCG  290

seq1  ATTTGTTTGCAAGAGTTGGAATTAAATCTCTAAGGCTCTTATTTTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGCAAGAGTTGGAATTAAATCTCTAAGGCTCTTATTTTCTCAG  340

seq1  AGTCTTTCTACACCACCCTTGCTTTAATGAAATGTAGTGCCGCCTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTACACCACCCTTGCTTTAATGAAATGTAGTGCCGCCTTTGCA  390

seq1  GCTGAGCTATTGGTCTGTTTCCTGCCTGCTGTAGTTTTTTTAAATTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTATTGGTCTGTTTCCTGCCTGCTGTAGTTTTTTTAAATTTGTT  440

seq1  TCCTTTTACTTTAATGTCTCTGATATCCTTGAACATGCTATCTTAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTACTTTAATGTCTCTGATATCCTTGAACATGCTATCTTAGCACT  490

seq1  CTACATACTAAGCTGTATCACCACGCCTTAACTTGATCTTAATTGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACTAAGCTGTATCACCACGCCTTAACTTGATCTTAATTGCCTTC  540

seq1  CAACACTTGTATTAAAAGGAGTCCTTGGAACTATTGGAAGATGGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTGTATTAAAAGGAGTCCTTGGAACTATTGGAAGATGGCAAAGT  590

seq1  ATTTTAAGTGATGGTGACTGGTGAGATCCTCTAGGTCATTTTGGAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTGATGGTGACTGGTGAGATCCTCTAGGTCATTTTGGAGGTAT  640

seq1  GTCCTTAAAGAGCTTGGGCACTCTGGTCTTTTTTTCCTTTTTCTGGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAAGAGCTTGGGCACTCTGGTCTTTTTTTCCTTTTTCTGGTGTC  690

seq1  AAGCTATGGAGTAAGCCACTTTGCAGAAAGGCTCCAAAACAAGAAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGGAGTAAGCCACTTTGCAGAAAGGCTCCAAAACAAGAAAGCCC  740

seq1  AACTGACACAGACAGAAATCTTTAACACCTGCGCCAAAATAAACCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACACAGACAGAAATCTTTAACACCTGCGCCAAAATAAACCCTTCC  790

seq1  TCATTATAAATTGATCTCCTGGATAATTTGTTAAAATGGCAGAAAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAAATTGATCTCCTGGATAATTTGTTAAAATGGCAGAAAGCAGA  840

seq1  CTGAATGACAGCACCAATAAAATTGGACTGGGTTTTGGTTATTTTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGACAGCACCAATAAAATTGGACTGGGTTTTGGTTATTTTTTGTT  890

seq1  TGTTTGTTTGTTTTGTTTTGGTTTCGTTTTGGCTTTGTTTTGTTTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTGTTTTGGTTTCGTTTTGGCTTTGTTTTGTTTGTTTG  940

seq1  TTTTTTGGACAGTATCCTTTCATTTGTTCCTGTCAAATAAAGTTGGCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGACAGTATCCTTTCATTTGTTCCTGTCAAATAAAGTTGGCAGT  990

seq1  ATTTCTGTTTTTCT  1014
      ||||||||||||||
seq2  ATTTCTGTTTTTCT  1004