BAC Information

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BAC

Clone NameB6Ng01-346E17
Chromosome5 (Build37)
Map Location 10,577,722 - 10,578,447
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E17.bB6Ng01-346E17.g
ACCGA128232GA128233
length1,208727
definitionB6Ng01-346E17.b B6Ng01-346E17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccattgtgtaaatgtaccacacattttgtttccattccactgttg
aagaatgtctaggttctttccaacttctggctattataaataagactgct
gtgaacatagtagagcattcctgatctttccaagacttttatcatgaaag
ggtgttggattttgtcaaatgatcatgtggtctttatcttgtagtttgtt
ttcatagtggattacattgatggtaatccacttaacctgcttccttggga
tgaagtctacttaatcatggtgaatgatcttttttgttgtgctcttggat
tctgtttgtgaaaattttattgggaatttttgcattgatattcataaggg
aaattggtctgaagttctctttctttgttgtgtctttggtttaagtataa
acgtaattttggctttatagaaggaattcggtagagatccttctgtttct
agtttgtggaatatttggaagagtattagtatcagatcttccttgaaggt
ctgatagaattgtgcactaaacccatttggtcctgggctttctttggcta
ggagtcttttaatgactgcttctatttctttagttgttatgggattgttt
agatagtttatctattcctgatttaactttggtacctggtatctgtctag
aaaattgttcatttcatccagattttccagttgtgttttccagtttttgt
acaggatctgatggttttttgaatttcctcagtttcttttgttatgtctt
ctttttcatttttgattgtgttaatttggatactctctctatgcccttag
tctgactaaggatttaatctatcttgttgattttctcaaagaaccagctt
ctggttttgttgattctttgtttagttctttttgtttctacttggttgat
ttaatccctgagtttgattatttcctgctgtctactcctcttgggtgtat
ttgcttcttttcgttctagagctttcagatgtgctgtaagctgatagtgt
atgttctcctctagtttctttttggagtcactcaatgctgagttttcctg
tatccactgctttcattgggtccctaagtttaagtagttgtgccttcatt
ttgttatggaatatctggtttctccataattgggaaatgagagttcgcct
ggcaatgatagcctgggctgacattttgtttctctacaggacctgaaata
gactctcg
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttcttagcattttcaacaaatggtgctg
gcacaactggcagttattatgtagaagaatgtgaattgatccattcctat
ctccttgtactaaggtcaaatctaagtggattaaggaactccacataaaa
acagagacactgaaacttatagaagatgtcttattctgaagactaggatt
tttgcaaagtatgtgagtggagagattccattttcctgtaattagtttgt
ctgttccaaagaagttgtgcaactacagaattaaaaccaacaaacaaaca
aaaaatgaaaagattaataaaaaagaattagatcgatctctctctttctc
tgtctctctgtctctctttctgtctgtctctctgtctctatctctgtctc
tgtctctctgtgtgtgtgtgtttgtgtgtgtgtgtgtgtttgcttttgtg
aatgaatggcaataacacagaactgtgggaaactatgaaaggaaataatg
gaagattatgtagaaaaagctataaagaacttcattcaggagtagaaagt
gaaacacaattgtgacagacgagtggatacaatggtctgtaaacattgta
aaattgtctctgttaatataatctactgatatgcctcagtacaggggaaa
gccagggccaaaaaggggggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10577722_10578447
seq2: B6Ng01-346E17.g_65_791

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCTACCTTCTTGAGTTCTTAGCATTTTCAACAAATGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCTACCTTCTTGAGTTCTTAGCATTTTCAACAAATGGTGCTG  100

seq1  GCACAACTGGCAGTTATTATGTAGAAGAATGTGAATTGATCCATTCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTGGCAGTTATTATGTAGAAGAATGTGAATTGATCCATTCCTAT  150

seq1  CTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAA  200

seq1  ACAGAGACACTGAAACTTATAGAAGATGTCTTATTCTGAAGACTAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACTGAAACTTATAGAAGATGTCTTATTCTGAAGACTAGGATT  250

seq1  TTTGCAAAGTATGTGAGTGGAGAGATTCCATTTTCCTGTAATTAGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGTATGTGAGTGGAGAGATTCCATTTTCCTGTAATTAGTTTGT  300

seq1  CTGTTCCAAAGAAGTTGTGCAACTACAGAATTAAAACCAACAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAAAGAAGTTGTGCAACTACAGAATTAAAACCAACAAACAAACA  350

seq1  AAAAATGAAAAGATTAATAAAAAAGAATTAGATCGATCTCTCTCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAGATTAATAAAAAAGAATTAGATCGATCTCTCTCTTTCTC  400

seq1  TGTCTCTCTGTCTCTCTTTCTGTCTGTCTCTCTGTCTCTATCTCTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTGTCTCTCTTTCTGTCTGTCTCTCTGTCTCTATCTCTGTCTC  450

seq1  TGTCTCTCTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTTTGCTTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTTTGCTTTTGTG  500

seq1  AATGAATGGCAATAACACAGAACTGTGGGAAACTATGAAAGGAAATAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGGCAATAACACAGAACTGTGGGAAACTATGAAAGGAAATAATG  550

seq1  GAAGATTATGTAGAAAAAGCTATAAAGAACTTCATTCAGGAGTAGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTATGTAGAAAAAGCTATAAAGAACTTCATTCAGGAGTAGAAAGT  600

seq1  GAAACACAATTGTGACAGACGAGTGGATACAATGGTCTGTAAACATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAATTGTGACAGACGAGTGGATACAATGGTCTGTAAACATTGTA  650

seq1  AAATTGTCTCTGTTAATATAATCTACTGATATGCCTCAGTACAGGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTCTGTTAATATAATCTACTGATATGCCTCAGTACAGGGGAAA  700

seq1  GCCAGGGCCAAAAA-GGGGGAGTGGGG  726
      |||||||||||||| ||||||||||||
seq2  GCCAGGGCCAAAAAGGGGGGAGTGGGG  727