BAC Information

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BAC

Clone NameB6Ng01-346E22
Chromosome5 (Build37)
Map Location 68,176,936 - 68,178,126
singlet/doubletsinglet
Overlap geneAtp8a1
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, LOC100042458
Downstream geneEG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E22.bB6Ng01-346E22.g
ACCGA128242GA128243
length1,2611,187
definitionB6Ng01-346E22.b B6Ng01-346E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctggaccctttccattacctagttagccacttcataacaat
ttttatattaaagtctctctgtacaaattactcgttccctctattaattt
cagtgtctctggtcttatgtggaggtctttgatccacttagacttgagct
ttgtacaaggagataagaatggatcgatttgcattcttttacatgataac
aaccagttgtgccagcaccatttgttgaaaatgctgtctttcttccactg
gatggttttagctcccttgtcaaagatcaagtaaccataggtgtgtgggt
tcatttctgggtcttcaattctattccattgatctacttgtctgtcactg
taccagtaccatgcagtttttatcacaattgctctgtaatacagtgaatg
tcaggcatggtgattccaccagaggttcttttattgttgagaatagtttt
tgctatcctagatttttttatttttccagatgaatttgcaaattgccctt
tctatctcagtgaagaattgggttggaattttgatggggattgcattgaa
tctgtagattgcttttggcaagatagccatttttactatattgatcctgc
caatccatgagcatgggagatctttccatcttctgagatcttcttcaatt
tctttcttcagagtcttgaagttcttatcatacagatctttcacttcctt
agttagagtcacaccaaggtattttatattatttgtgactattgagaagg
gtgttgtttccctaatttctttctcagtctgtttatcatttgtgtagaga
aaggccattaatttatttgagttaaattttatacctagctactgcactga
agctatttatcaggtctaggagttctctggtggaatttttgggggtcact
taatatatactatcatatcatctgcaaatagtgatgttttggacttcttc
ctttcgaatttgtatccccttgatgtccttttgtgtcaaattgctccaga
aacatagaacaacccaagaaaacaatttgcaaaacaacaagaaaaatcaa
gaagagggaagaaccaataagtggaatacctccattcctcccttagaaaa
tagggaacaaaaataccaatgaaagggaatttaccggaagccaaggttgg
agcttaagaacctaaaggaatgaacatatccaagaaactatctcactcag
gaatctctatccaatatatatcgagcacccaaacctcaagaacaacaaca
tcgtgtcgcat
gaattcccacatttctagaagaggagatgtcagttcttagtctagctagt
gattaaaaaaaaaaatcaacaaataatttttttttatttgagaagagaca
ctatcccttcactgacagaaggtgaccatacacaatcaccaaggagaact
gcatacatggacttcaacggagcataaatgaattggcagcaggcaacact
tttgttgccccagtaagataatgtcctgtgagatatgtgtccagtgtccc
actgccctggcctccaagaagccatctaatggccaccaaggctactgact
gcggatgactaggggccagtgttctggaactatggaagaactaccaattg
tcattgcttaccttttgtaaggaatggctacaagaagagacacctggata
acactggtcaaattgggactccactcacaatgccagggtgaagttcctag
ctagcaggtcaacctctgaagaactgacctctgctttattagagaatggc
atctagtttacatgaccacttgtctttaaataagtggtaaaatgtaaatg
ggctgatttcactgtatgagtgtgaactaaaacatgcaaaatgtgaaata
gcagaactccaatttcttttacttggacagtagatgatcaaaacaaaatt
tacaacacaaaataagtaaaatctatgaaagagtattcaaaatacactgt
gaaacaaaaaacgttctagatagtactttccagagaacagccttcctgga
agagtacagaaatgctcagcagatagagctaagggaaggtttcacgaatg
tttacaataattactaatcagctccgcattagtagagttgttaacatttg
cttataatatatacaaaaactatgccataaagtgcacttgtatgcatttt
cttctggaataaactaaagccaacacataccttttcccagtgaacaattt
cccatgcaccatttctcaaaactgcagagagaaaagatgacattttaaga
gaccattttttttaaactaccaatcacaggtctatctaaagaaaatgatt
attttaatgagtgacttctatgaatgactatcagcatattatattcttta
aaggctagtgtgacagcaggcgcaacaaggaattaaatgccagtctaatt
tcagctccgcagggaattttattcttaactcaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68176936_68178126
seq2: B6Ng01-346E22.g_65_1251

seq1  GAATTCCCACATTTCTAGAAGAGGAGATGTCAGTTCTTAGTCTAGCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACATTTCTAGAAGAGGAGATGTCAGTTCTTAGTCTAGCTAGT  50

seq1  GATTAAAAAAAAAAATCAACAAATAATTTTTTTTTATTTGAGAAGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAAAAAAAATCAACAAATAATTTTTTTTTATTTGAGAAGAGACA  100

seq1  CTATCCCTTCACTGACAGAAGGTGACCATACACAATCACCAAGGAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTTCACTGACAGAAGGTGACCATACACAATCACCAAGGAGAACT  150

seq1  GCATACATGGACTTCAACGGAGCATAAATGAATTGGCAGCAGGCAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATGGACTTCAACGGAGCATAAATGAATTGGCAGCAGGCAACACT  200

seq1  TTTGTTGCCCCAGTAAGATAATGTCCTGTGAGATATGTGTCCAGTGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCCCCAGTAAGATAATGTCCTGTGAGATATGTGTCCAGTGTCCC  250

seq1  ACTGCCCTGGCCTCCAAGAAGCCATCTAATGGCCACCAAGGCTACTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTGGCCTCCAAGAAGCCATCTAATGGCCACCAAGGCTACTGACT  300

seq1  GCGGATGACTAGGGGCCAGTGTTCTGGAACTATGGAAGAACTACCAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATGACTAGGGGCCAGTGTTCTGGAACTATGGAAGAACTACCAATTG  350

seq1  TCATTGCTTACCTTTTGTAAGGAATGGCTACAAGAAGAGACACCTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTACCTTTTGTAAGGAATGGCTACAAGAAGAGACACCTGGATA  400

seq1  ACACTGGTCAAATTGGGACTCCACTCACAATGCCAGGGTGAAGTTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTCAAATTGGGACTCCACTCACAATGCCAGGGTGAAGTTCCTAG  450

seq1  CTAGCAGGTCAACCTCTGAAGAACTGACCTCTGCTTTATTAGAGAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGTCAACCTCTGAAGAACTGACCTCTGCTTTATTAGAGAATGGC  500

seq1  ATCTAGTTTACATGACCACTTGTCTTTAAATAAGTGGTAAAATGTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTTACATGACCACTTGTCTTTAAATAAGTGGTAAAATGTAAATG  550

seq1  GGCTGATTTCACTGTATGAGTGTGAACTAAAACATGCAAAATGTGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTTCACTGTATGAGTGTGAACTAAAACATGCAAAATGTGAAATA  600

seq1  GCAGAACTCCAATTTCTTTTACTTGGACAGTAGATGATCAAAACAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTCCAATTTCTTTTACTTGGACAGTAGATGATCAAAACAAAATT  650

seq1  TACAACACAAAATAAGTAAAATCTATGAAAGAGTATTCAAAATACACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACAAAATAAGTAAAATCTATGAAAGAGTATTCAAAATACACTGT  700

seq1  GAAACAAAAAACGTTCTAGATAGTACTTTCCAGAGAACAGCCTTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAAACGTTCTAGATAGTACTTTCCAGAGAACAGCCTTCCTGGA  750

seq1  AGAGTACAGAAATGCTCAGCAGATAGAGCTAAGGGAAGGTTTCACGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACAGAAATGCTCAGCAGATAGAGCTAAGGGAAGGTTTCACGAATG  800

seq1  TTTACAATAATTACTAATCAGCTCCGCATTAGTAGAGTTGTTAACATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATAATTACTAATCAGCTCCGCATTAGTAGAGTTGTTAACATTTG  850

seq1  CTTATAATATATACAAAAACTATGCCATAAAGTGCACTTGTATGCA-TTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTATAATATATACAAAAACTATGCCATAAAGTGCACTTGTATGCATTTT  900

seq1  CTTCTGGAATAAACTAAAGCCAACACATACCTTTTCCCAGTGAACAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAATAAACTAAAGCCAACACATACCTTTTCCCAGTGAACAATTT  950

seq1  CCCATGCACCATTTCTCAAAACTGCAGAGAGAAAAGATGACATTTT-AGA  998
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCATGCACCATTTCTCAAAACTGCAGAGAGAAAAGATGACATTTTAAGA  1000

seq1  GAACATTTTTTTTAAACTACCAATCACAGGTTCTATCTAAAGAAAATGAT  1048
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACCATTTTTTTTAAACTACCAATCACAGG-TCTATCTAAAGAAAATGAT  1049

seq1  TATTTTAAATGAGTGACTTCTAATGAAATGACTATCAGCAATATTATA-T  1097
      |||||| |||||||||||||| ||| ||||||||||||| |||||||| |
seq2  TATTTT-AATGAGTGACTTCT-ATG-AATGACTATCAGC-ATATTATATT  1095

seq1  CTTTAAAAGCTAGTTGTGACAGCAAGGCGCAAACAAGGAAATAAAATTGC  1147
      ||||||| ||||| ||||||||| |||||| ||||||||| ||||  |||
seq2  CTTTAAAGGCTAG-TGTGACAGC-AGGCGC-AACAAGGAATTAAA--TGC  1140

seq1  AATTTCTATTTCAGCTCCCGCAGTGA--TTTAT--CTAACTCAAGGCA  1191
       | |   ||||||||| |||||| ||  |||||   ||||||||||||
seq2  CAGTCTAATTTCAGCT-CCGCAGGGAATTTTATTCTTAACTCAAGGCA  1187