BAC Information

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BAC

Clone NameB6Ng01-346H02
Chromosome5 (Build37)
Map Location 55,790,724 - 55,931,603
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346H02.bB6Ng01-346H02.g
ACCGA128338GA128339
length1,119257
definitionB6Ng01-346H02.b B6Ng01-346H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,930,481 - 55,931,603)(55,790,724 - 55,790,980)
sequence
gaattcactctgtagaccaggctggtcttgaacttagaaatatccctgcc
tttgcctcccaagtgctgggatttaaaggcatgtgccaccactgcccggc
atgattaataaattttcaaaaagtttaaaaatagaaagaccaataaaaat
gatagcatttcacttattggcgtaggcagttctatgtctaaatttaattt
aagagattttcttctctaaattatacaaagtatacaaagagtctatttca
ttattttcaggagttcctatagttcacgtttggtattcatgttgtacaaa
caatagagttttttgtattagaatcatatattattgtatatttgaacata
tgaaattgataagtaagataattcttaatctgagaaagaagtatcaaagt
ctgatatttgtatacaaatgtgttcatacatgtatgtgagtatttgtaga
ataatgaaagggaagactgcaagattacagagacaagactcagaaccaaa
aatcataagatactatttcatactaatgtatacatttaaagtaagggcat
tattgagtgggaggaataagatacttgaacaatgtagcaaatagaagcct
gtgctcaagtaggacagttttaagtgaataaaattaatgagaatgatata
tggaaaaagatagaggaaaatgagagaaagaaagattgatgagaagtaga
gtttgtggttgtgatattaaatcctgtaaaataatgcttaattgtttaat
atagcatctgaatgttatattttatttcacattgtcttgatatacatata
tataaatttatatatatgaatatatatgaattcataggtgttttcaattg
tatagatagttaaaaactcagagtttgtcttaaatacaaagaggaaagag
atagtaaagaaatggtttattaatatatttttcatacataattgtacaca
gtgtgcataaaaacattattttaaattgttttaagaagttgaaaatttat
gttaaaaccagtattcatgcatttctcttttattcaactttaaaattgtt
ctttaactgtcaggacctatagacagctacatatgacattttttggagga
gagtctacatcgaacagtg

agtagtaatatgagtagctggtactggactgtggataggtgtgcgctgtc
catgtctccttcaatgtgccacttccccttatagtctctggtgctcactt
acaataaaagaaacactttccccaaaactgtctctggagtggtttatctc
tggccccttactgaccacctgcattactgcctttcatgggacactttgat
aacaaaagcaagtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgaa
gggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55930481_55931603
seq2: B6Ng01-346H02.b_51_1169 (reverse)

seq1  CACTGTCTGATGTAGACTCTCCTCCAAAAAATTGTCAATATGTAGCTGTC  50
      ||||||  ||||||||||||||||||||||| |||| |||||||||||||
seq2  CACTGTTCGATGTAGACTCTCCTCCAAAAAA-TGTC-ATATGTAGCTGTC  48

seq1  TAATAGTGTCTGACAGTTAAAGAACAATTTTAAAGTTGAATAAAAGAGAA  100
      | ||||   |||||||||||||||||||||||||||||||||||||||||
seq2  T-ATAGGTCCTGACAGTTAAAGAACAATTTTAAAGTTGAATAAAAGAGAA  97

seq1  ATGCATG-ATACTGGTTTTAACATAAAATTTTCAACTTCTTAAAACAATT  149
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCATGAATACTGGTTTTAACAT-AAATTTTCAACTTCTTAAAACAATT  146

seq1  TAAAATAATGTTTTTAATGCACACTGTGTACAATTATGTATGAAAAATAT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGTTTTT-ATGCACACTGTGTACAATTATGTATGAAAAATAT  195

seq1  ATTAATAAACCATTTCTTTACTATCTCTTTCCTCTTTGTATTTAAGACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAACCATTTCTTTACTATCTCTTTCCTCTTTGTATTTAAGACAA  245

seq1  ACTCTGAGTTTTTAACTATCTATACAATTGAAAACACCTATGAATTCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTTTTAACTATCTATACAATTGAAAACACCTATGAATTCATA  295

seq1  TATATTCATATATATAAATTTATATATATGTATATCAAGACAATGTGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATATATATAAATTTATATATATGTATATCAAGACAATGTGAAA  345

seq1  TAAAATATAACATTCAGATGCTATATTAAACAATTAAGCATTATTTTACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAACATTCAGATGCTATATTAAACAATTAAGCATTATTTTACA  395

seq1  GGATTTAATATCACAACCACAAACTCTACTTCTCATCAATCTTTCTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAATATCACAACCACAAACTCTACTTCTCATCAATCTTTCTTTCT  445

seq1  CTCATTTTCCTCTATCTTTTTCCATATATCATTCTCATTAATTTTATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCCTCTATCTTTTTCCATATATCATTCTCATTAATTTTATTCA  495

seq1  CTTAAAACTGTCCTACTTGAGCACAGGCTTCTATTTGCTACATTGTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTGTCCTACTTGAGCACAGGCTTCTATTTGCTACATTGTTCAA  545

seq1  GTATCTTATTCCTCCCACTCAATAATGCCCTTACTTTAAATGTATACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTATTCCTCCCACTCAATAATGCCCTTACTTTAAATGTATACATT  595

seq1  AGTATGAAATAGTATCTTATGATTTTTGGTTCTGAGTCTTGTCTCTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAATAGTATCTTATGATTTTTGGTTCTGAGTCTTGTCTCTGTAA  645

seq1  TCTTGCAGTCTTCCCTTTCATTATTCTACAAATACTCACATACATGTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGTCTTCCCTTTCATTATTCTACAAATACTCACATACATGTATG  695

seq1  AACACATTTGTATACAAATATCAGACTTTGATACTTCTTTCTCAGATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTGTATACAAATATCAGACTTTGATACTTCTTTCTCAGATTAA  745

seq1  GAATTATCTTACTTATCAATTTCATATGTTCAAATATACAATAATATATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTTACTTATCAATTTCATATGTTCAAATATACAATAATATATG  795

seq1  ATTCTAATACAAAAAACTCTATTGTTTGTACAACATGAATACCAAACGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATACAAAAAACTCTATTGTTTGTACAACATGAATACCAAACGTG  845

seq1  AACTATAGGAACTCCTGAAAATAATGAAATAGACTCTTTGTATACTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGGAACTCCTGAAAATAATGAAATAGACTCTTTGTATACTTTGT  895

seq1  ATAATTTAGAGAAGAAAATCTCTTAAATTAAATTTAGACATAGAACTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGAGAAGAAAATCTCTTAAATTAAATTTAGACATAGAACTGCC  945

seq1  TACGCCAATAAGTGAAATGCTATCATTTTTATTGGTCTTTCTATTTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCAATAAGTGAAATGCTATCATTTTTATTGGTCTTTCTATTTTTAA  995

seq1  ACTTTTTGAAAATTTATTAATCATGCCGGGCAGTGGTGGCACATGCCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGAAAATTTATTAATCATGCCGGGCAGTGGTGGCACATGCCTTT  1045

seq1  AAATCCCAGCACTTGGGAGGCAAAGGCAGGGATATTTCTAAGTTCAAGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCACTTGGGAGGCAAAGGCAGGGATATTTCTAAGTTCAAGAC  1095

seq1  CAGCCTGGTCTACAGAGTGAATTC  1123
      ||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAATTC  1119


seq1: chr5_55790724_55790980
seq2: B6Ng01-346H02.g_71_327

seq1  AGTAGTAATATGAGTAGCTGGTACTGGACTGTGGATAGGTGTGCGCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAATATGAGTAGCTGGTACTGGACTGTGGATAGGTGTGCGCTGTC  50

seq1  CATGTCTCCTTCAATGTGCCACTTCCCCTTATAGTCTCTGGTGCTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCCTTCAATGTGCCACTTCCCCTTATAGTCTCTGGTGCTCACTT  100

seq1  ACAATAAAAGAAACACTTTCCCCAAAACTGTCTCTGGAGTGGTTTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAGAAACACTTTCCCCAAAACTGTCTCTGGAGTGGTTTATCTC  150

seq1  TGGCCCCTTACTGACCACCTGCATTACTGCCTTTCATGGGACACTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTACTGACCACCTGCATTACTGCCTTTCATGGGACACTTTGAT  200

seq1  AACAAAAGCAAGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCAAGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGAA  250

seq1  GGGAGGA  257
      |||||||
seq2  GGGAGGA  257


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