BAC Information

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BAC

Clone NameB6Ng01-346K01
Chromosome5 (Build37)
Map Location 57,610,231 - 57,785,068
singlet/doubletdoublet
Overlap geneLOC100041349, LOC666455
Upstream geneLOC100041335
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346K01.bB6Ng01-346K01.g
ACCGA128471GA128472
length1,2131,191
definitionB6Ng01-346K01.b B6Ng01-346K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,610,231 - 57,611,441)(57,783,869 - 57,785,068)
sequence
gaattcacttttagtttctcagattgctttagttatgattagtttttgca
aatatttttcccatctggattatgagcacactgcagatcaacaattgtat
aatttgaattgtggaaatatttgtacaacgggtgaaatgtgtacttctgt
ggtttgggataagtaatcagctgtgtaataaaaataataataaataagat
atgcaaatggaacttcaataaatttcccagatggtttgtgtgatctattc
aatttgcttattttgtctgcattattattctatacaattatagctctgaa
aggataaatctgaaaacttttcacactttttagagaaacctaatacaatt
ttccaaatcaattaaatacactatttgcattttaatgtattttaaaatga
tgaggagactgtgagcttgactatatctcagattttactgttcataggtt
aaatcttatgtatgtagcattaattatcttttaaactctatattattgtt
acaagtatatttatctaaaagtaaacattaacataaaacacaatgccgca
cactgaatttttatagaagctcatatccttttgatatctatgtagaaatg
tttgtaagttatttaattttgtgtgtcacctgtcctcagtataaaatgat
catatgcatacatgatagttgctagtaaagggaagattaatagttcataa
ttaaacatttttagttttaaatgtctatgatacatcatactaagttcccc
ttagaattcaccatcacagttttaagaaaaagaacatacacacatgacaa
aattattacatacaatttttaagatttctatttttaaacagtagaattat
atattactagtaatatatgtgatttttgaaatattactagaatatattgc
caattgtaggacacatacttgatccagatttttaattaaatatgacagaa
agatgacttttataaagtcaaactctaattaggcaccttttttctgaaat
caaatgcagttgtgctggttgttgttctgtgttgacacaaggtataaaaa
gaagtgacttaacctaaattgaaggaggcatgagaaaaaaatagttgaaa
aactatttattcttacacttgtctagttccgaatttctatttcctgccac
aaaacatcccgatctaggagccattggaggaaagattttttcaccttacc
tcacattgctgtt

gaattctagttactagtcaattcattacacaacaatgtcatctgacttgt
gtgaggcatattttgaaatcagtctcttgatgtctagtcattcctttaaa
ggtacttcattcacagtttttcttcttgcacatagcctttaatgactttg
ctatgagttaccagctatgctataatttatttatttatttatttatttgc
attcgtttgactaaggaaattttctgtgaaagtttttaaagaggtgttat
gtgtatgtatgaatgtctgcatgtttgtatgcagatcatttgtatgtctg
attcacattgtggccagaaggggtctttggggaggcaggcccttgtactc
ctgttacaggtagtttgctgtgggatgcctgacttgcatgctggaaccag
aatcccaatcctctgcaagagccttccctgtttattctcctcttccacaa
ttcatagatacaatgtctattgacaaaacctatgatatgtaccacctatg
atatgaaaataggtaaggcatggctccaatttcccccaggatactgaaaa
aacacattagaatccgataatttgaattattttttttattttgtggaata
aaaagttaatagttataccaagattgacttggaaatcgactaagcaatgt
aatcaacttgccttctgccagtgatgcacatatattaaaaagaagactgc
ctagagtgtattttggtgactaatacaacagagattttagtatagaaaaa
tgacaatggcaggaaatcgttgttgtgcatgacagactggaaaagtgctt
gttttgaggatgaacatgtcagaggctttcacagtgaggagtaccaggga
cttttggcgataacacatttagacccaaaatatcatttgaaaacaagaat
actggataggttatccttatttactgattctgattgaaaattctacaaaa
ataatatcatttaaaggaagcttatatttggatactactatgctgcatgg
ttactcatgtctgtgagacatgcttctgtctgtttatatccgaatatgag
tgtaaatatatgatgtgattatactaaaatctatttgacttctatatgtt
tttacaagttaggtctgaacaattgccacattttcctcagtaaataataa
ggttcagtctgaacaagctaatagtctattgtggggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57610231_57611441
seq2: B6Ng01-346K01.b_46_1258

seq1  GAATTCACTTTTAGTTTCTCAGATTGCTTTAGTTATGATTAGTTTTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAGTTTCTCAGATTGCTTTAGTTATGATTAGTTTTTGCA  50

seq1  AATATTTTTCCCATCTGGATTATGAGCACACTGCAGATCAACAATTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCCCATCTGGATTATGAGCACACTGCAGATCAACAATTGTAT  100

seq1  AATTTGAATTGTGGAAATATTTGTACAACGGGTGAAATGTGTACTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATTGTGGAAATATTTGTACAACGGGTGAAATGTGTACTTCTGT  150

seq1  GGTTTGGGATAAGTAATCAGCTGTGTAATAAAAATAATAATAAATAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGATAAGTAATCAGCTGTGTAATAAAAATAATAATAAATAAGAT  200

seq1  ATGCAAATGGAACTTCAATAAATTTCCCAGATGGTTTGTGTGATCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGGAACTTCAATAAATTTCCCAGATGGTTTGTGTGATCTATTC  250

seq1  AATTTGCTTATTTTGTCTGCATTATTATTCTATACAATTATAGCTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTATTTTGTCTGCATTATTATTCTATACAATTATAGCTCTGAA  300

seq1  AGGATAAATCTGAAAACTTTTCACACTTTTTAGAGAAACCTAATACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAATCTGAAAACTTTTCACACTTTTTAGAGAAACCTAATACAATT  350

seq1  TTCCAAATCAATTAAATACACTATTTGCATTTTAATGTATTTTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATCAATTAAATACACTATTTGCATTTTAATGTATTTTAAAATGA  400

seq1  TGAGGAGACTGTGAGCTTGACTATATCTCAGATTTTACTGTTCATAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACTGTGAGCTTGACTATATCTCAGATTTTACTGTTCATAGGTT  450

seq1  AAATCTTATGTATGTAGCATTAATTATCTTTTAAACTCTATATTATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATGTATGTAGCATTAATTATCTTTTAAACTCTATATTATTGTT  500

seq1  ACAAGTATATTTATCTAAAAGTAAACATTAACATAAAACACAATGCCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATATTTATCTAAAAGTAAACATTAACATAAAACACAATGCCGCA  550

seq1  CACTGAATTTTTATAGAAGCTCATATCCTTTTGATATCTATGTAGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTTTTATAGAAGCTCATATCCTTTTGATATCTATGTAGAAATG  600

seq1  TTTGTAAGTTATTTAATTTTGTGTGTCACCTGTCCTCAGTATAAAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGTTATTTAATTTTGTGTGTCACCTGTCCTCAGTATAAAATGAT  650

seq1  CATATGCATACATGATAGTTGCTAGTAAAGGGAAGATTAATAGTTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATACATGATAGTTGCTAGTAAAGGGAAGATTAATAGTTCATAA  700

seq1  TTAAACATTTTTAGTTTTAAATGTCTATGATACATCATACTAAGTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTTTAGTTTTAAATGTCTATGATACATCATACTAAGTTCCCC  750

seq1  TTAGAATTCACCATCACAGTTTTAAGAAAAAGAACATACACACATGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTCACCATCACAGTTTTAAGAAAAAGAACATACACACATGACAA  800

seq1  AATTATTACATACAATTTTTAAGATTTCTATTTTTAAACAGTAGAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACATACAATTTTTAAGATTTCTATTTTTAAACAGTAGAATTAT  850

seq1  ATATTACTAGTAATATATGTGATTTTTGAAATATTACTAGAATATATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTAGTAATATATGTGATTTTTGAAATATTACTAGAATATATTGC  900

seq1  CAATTGTAGGACACATACTTGATCCAGATTTTTAATTAAATATGACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAGGACACATACTTGATCCAGATTTTTAATTAAATATGACAGAA  950

seq1  AGATGACTTTAATAAGGTCAAACTCTAATTAGGCACC-TTTATCTGAAAT  999
      |||||||||| |||| ||||||||||||||||||||| ||| ||||||||
seq2  AGATGACTTTTATAAAGTCAAACTCTAATTAGGCACCTTTTTTCTGAAAT  1000

seq1  CAAATGCAG-TGTGCTGGTTGTTGTTCTGTGTTGACACAAGGTATAAAAA  1048
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGTTGTGCTGGTTGTTGTTCTGTGTTGACACAAGGTATAAAAA  1050

seq1  GAAGTGACTAAACC-AAAATGAAGGAGGCATGAG-AAAAAATAGTTGAAA  1096
      ||||||||| |||| ||| ||||||||||||||| |||||||||||||||
seq2  GAAGTGACTTAACCTAAATTGAAGGAGGCATGAGAAAAAAATAGTTGAAA  1100

seq1  ACATATT--ATCTTACACCTTGTCTAG-TCAGAATTTCTA-TTCCTG-CA  1141
      |  ||||   ||||||| ||||||||| || ||||||||| |||||| ||
seq2  AACTATTTATTCTTACA-CTTGTCTAGTTCCGAATTTCTATTTCCTGCCA  1149

seq1  CAAAACATCACGATCAAGAAGCAATTTGGGAGGAAAGAATTTATTCAGCT  1191
      ||||||||| ||||| || ||| |||  ||||||||| |||| |||| ||
seq2  CAAAACATCCCGATCTAGGAGCCATT--GGAGGAAAG-ATTTTTTCACCT  1196

seq1  TACACTTCAACATTGCTGTT  1211
      ||| ||   |||||||||||
seq2  TAC-CT--CACATTGCTGTT  1213


seq1: chr5_57783869_57785068
seq2: B6Ng01-346K01.g_66_1256 (reverse)

seq1  CTTCCCCCCACA--TGACTA-TAGCTTGTTTCAGATTGAAACCTATATAT  47
      ||||||||||||   ||||| ||||||| |||||| |||| | ||| |||
seq2  CTTCCCCCCACAATAGACTATTAGCTTG-TTCAGACTGAACCTTAT-TAT  48

seq1  TATACTGAAGAAAAATGT-GCATTTGGTTTTAGACACTACTTGTAAAAAC  96
      | ||||| || ||||||| ||| |||  || ||||   ||||||||||||
seq2  T-TACTG-AGGAAAATGTGGCAATTG--TTCAGACCTAACTTGTAAAAAC  94

seq1  ATATAGAAGTCAAATAGATTTTAGTATAATCACATTCATTATATTTACAC  146
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  ATATAGAAGTCAAATAGATTTTAGTATAATCACA-TCA-TATATTTACAC  142

seq1  TCATATTCGGATAATAAACAGACAGAAGCATGTTCTTCACAGACATGGAG  196
      |||||||||||| ||||||||||||||||||||   |||||||||| |||
seq2  TCATATTCGGAT-ATAAACAGACAGAAGCATGT--CTCACAGACAT-GAG  188

seq1  TAACCATGCAGCATAGTAGTATCCAAATATAAGCTTCCTTTAAATGATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGCAGCATAGTAGTATCCAAATATAAGCTTCCTTTAAATGATAT  238

seq1  TATTTTTGTAGAATTTTCAAATCAGAATCAGTAAATAAGGATAACCTATC  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTTTTGTAGAATTTTC-AATCAGAATCAGTAAATAAGGATAACCTATC  287

seq1  CAGTATTCTTGTTTTCAAATGATATTTTGGGTCTAAATGTGTTATCGCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCTTGTTTTCAAATGATATTTTGGGTCTAAATGTGTTATCGCCA  337

seq1  AAAGTCCCTGGTACTCCTCACTGTGAAAGCCTCTGACATGTTCATCCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCTGGTACTCCTCACTGTGAAAGCCTCTGACATGTTCATCCTCA  387

seq1  AAACAAGCACTTTTCCAGTCTGTCATGCACAACAACGATTTCCTGCCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCACTTTTCCAGTCTGTCATGCACAACAACGATTTCCTGCCATT  437

seq1  GTCATTTTTCTATACTAAAATCTCTGTTGTATTAGTCACCAAAATACACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTCTATACTAAAATCTCTGTTGTATTAGTCACCAAAATACACT  487

seq1  CTAGGCAGTCTTCTTTTTAATATATGTGCATCACTGGCAGAAGGCAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGTCTTCTTTTTAATATATGTGCATCACTGGCAGAAGGCAAGTT  537

seq1  GATTACATTGCTTAGTCGATTTCCAAGTCAATCTTGGTATAACTATTAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATTGCTTAGTCGATTTCCAAGTCAATCTTGGTATAACTATTAAC  587

seq1  TTTTTATTCCACAAAATAAAAAAAATAATTCAAATTATCGGATTCTAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCCACAAAATAAAAAAAATAATTCAAATTATCGGATTCTAATG  637

seq1  TGTTTTTTCAGTATCCTGGGGGAAATTGGAGCCATGCCTTACCTATTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCAGTATCCTGGGGGAAATTGGAGCCATGCCTTACCTATTTTC  687

seq1  ATATCATAGGTGGTACATATCATAGGTTTTGTCAATAGACATTGTATCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATAGGTGGTACATATCATAGGTTTTGTCAATAGACATTGTATCTA  737

seq1  TGAATTGTGGAAGAGGAGAATAAACAGGGAAGGCTCTTGCAGAGGATTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTGGAAGAGGAGAATAAACAGGGAAGGCTCTTGCAGAGGATTGG  787

seq1  GATTCTGGTTCCAGCATGCAAGTCAGGCATCCCACAGCAAACTACCTGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGTTCCAGCATGCAAGTCAGGCATCCCACAGCAAACTACCTGTA  837

seq1  ACAGGAGTACAAGGGCCTGCCTCCCCAAAGACCCCTTCTGGCCACAATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTACAAGGGCCTGCCTCCCCAAAGACCCCTTCTGGCCACAATGT  887

seq1  GAATCAGACATACAAATGATCTGCATACAAACATGCAGACATTCATACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGACATACAAATGATCTGCATACAAACATGCAGACATTCATACAT  937

seq1  ACACATAACACCTCTTTAAAAACTTTCACAGAAAATTTCCTTAGTCAAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAACACCTCTTTAAAAACTTTCACAGAAAATTTCCTTAGTCAAAC  987

seq1  GAATGCAAATAAATAAATAAATAAATAAATTATAGCATAGCTGGTAACTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAATAAATAAATAAATAAATAAATTATAGCATAGCTGGTAACTC  1037

seq1  ATAGCAAAGTCATTAAAGGCTATGTGCAAGAAGAAAAACTGTGAATGAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGTCATTAAAGGCTATGTGCAAGAAGAAAAACTGTGAATGAAG  1087

seq1  TACCTTTAAAGGAATGACTAGACATCAAGAGACTGATTTCAAAATATGCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAAAGGAATGACTAGACATCAAGAGACTGATTTCAAAATATGCC  1137

seq1  TCACACAAGTCAGATGACATTGTTGTGTAATGAATTGACTAGTAACTAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAGTCAGATGACATTGTTGTGTAATGAATTGACTAGTAACTAGA  1187

seq1  ATTC  1200
      ||||
seq2  ATTC  1191


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