BAC Information

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BAC

Clone NameB6Ng01-346L24
Chromosome5 (Build37)7 (Build37)
Map Location 12,960,431 - 12,961,601146,174,881 - 146,175,248
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L24.bB6Ng01-346L24.g
ACCGA128562GA128563
length1,167980
definitionB6Ng01-346L24.b B6Ng01-346L24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,960,431 - 12,961,601)(146,174,881 - 146,175,248)
sequence
gaattcaagaccataacaagccacattaagctaaatcatatcatttcatc
ttttattaaattaaagaaactattaacattttcttgtgaactcaggtccc
atttatatgataggaattaactgctctatcaacagaattaaaggcaatat
atttctagagatatagaaatgaaaaaaaaatacagcttagattcttgctt
cattaaaataaaactttcatttttattttaggtatagtttaaatgtttca
gttatgctttgtttttaagatttacctataatagtttcttatgctaattt
tcaaaaacccatcacttaattgactggtattaaattattaaaacttattt
aaactcagctcctcctaattacttataggaatatgattattttcatatta
tgacaaaatgttattgagcaagaagccaaatgttaaagtttttactaaac
ttgtgtattagtgactgcctgaagttagggttattattgctgagatacaa
caccatgaccaaagcaatctgaggataaaatggtttattggtttatcctt
ccacattactgttcattatggagagaagtcaagagctgaccccgaggtca
tggaggagtgctgctttctagcttgttctacatagcttactgagcttgct
tctttatagaacataggaccacttgcccaggggtggcttttcaacaacgg
gcagggcaatcttacatctatcactaattaagaaaatagccaataaagat
gaaaggcttgcctattttccagtctaatggaggcattttctcaactgagg
ttttctcttctccagtgactttagttttgtcatgttgacataaaattagc
cagcacagtgaccatactgattattcttcatttaaagttcaattcttaaa
aatgggactttttttatttgtggagtttgatgtggcctttcaataatacg
catacaacaagattgctatgagtggaattagatgccattggaaacatttt
ctaagttgtgggcatacattacttatataattactttgtgccgtagttcc
tatatggaaattatacttgtaataaatttacctcaggagtcttgatcctg
ttataactttaggaaggtctaggatgttggctaacacctgaataaccacg
gtttcactacgacaaca

gaattccaagaaaaattatatatatatatatatatatatatgcatacata
tcaatggggtattggaactaagcatttaatgttccagaacttcctgtgaa
ttttatcttctcccttaaatgcaaaagattgtctacatatcagctgtgca
cagctatgtaagaggtgtaatagactgagtgcaaaagtaggatataagct
tagtacaaatgatttgaatcaagcactttagaaaagagtaaccaaaaaaa
aaaaagtatgtttacacacaaagtgatttgtgcacttttggctaggcaaa
tttcactaaccttgcttccaatactctcgtccagaataatctaaattgtg
aggtgttgtagtttgaatctaatatgttctcagaggccggtatgctatag
tacaaatggttcagaggtagtaaaagctttagaaggtagggctcagagga
cgcaaggtaagtgattgtgtgtgtggaggagaaagtcattcttttttttt
tttaagtcataataatatagcttttattttcttttttgtttgtttgtttg
tttttttattaggtattttcctcatttacatttccaatgctatttttttt
gttttattttttattagatattttctttatttacatttcaaatgctatcc
caaaagttccctatatcccccccccccccgccgtgctcccctacccaccc
actcccacttcttggtcctggcattcccctgtactggggcatataaagtt
tgaaagaccaaggggcctctcatcccaatgatggccgactaggccatctt
ctgctacatatgcagctagagacacgagctctggggggtactggtcagtt
tcatattgttgttctacctatagggtttgcagatccttttagctcctttg
ggtactttctcttagatcctccattggggggcactgtgtttcatccaata
gatgactgtgagcatctactttctgtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12960431_12961601
seq2: B6Ng01-346L24.b_46_1212

seq1  GAATTCAAGACCATAACAAGCCACATTAAGCTAAATCATATCATTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCATAACAAGCCACATTAAGCTAAATCATATCATTTCATC  50

seq1  TTTTATTAAATTAAAGAAACTATTAACATTTTCTTGTGAACTCAGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAAATTAAAGAAACTATTAACATTTTCTTGTGAACTCAGGTCCC  100

seq1  ATTTATATGATAGGAATTAACTGCTCTATCAACAGAATTAAAGGCAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGATAGGAATTAACTGCTCTATCAACAGAATTAAAGGCAATAT  150

seq1  ATTTCTAGAGATATAGAAATGAAAAAAAAATACAGCTTAGATTCTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGAGATATAGAAATGAAAAAAAAATACAGCTTAGATTCTTGCTT  200

seq1  CATTAAAATAAAACTTTCATTTTTATTTTAGGTATAGTTTAAATGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATAAAACTTTCATTTTTATTTTAGGTATAGTTTAAATGTTTCA  250

seq1  GTTATGCTTTGTTTTTAAGATTTACCTATAATAGTTTCTTATGCTAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTTTGTTTTTAAGATTTACCTATAATAGTTTCTTATGCTAATTT  300

seq1  TCAAAAACCCATCACTTAATTGACTGGTATTAAATTATTAAAACTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACCCATCACTTAATTGACTGGTATTAAATTATTAAAACTTATTT  350

seq1  AAACTCAGCTCCTCCTAATTACTTATAGGAATATGATTATTTTCATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGCTCCTCCTAATTACTTATAGGAATATGATTATTTTCATATTA  400

seq1  TGACAAAATGTTATTGAGCAAGAAGCCAAATGTTAAAGTTTTTACTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAATGTTATTGAGCAAGAAGCCAAATGTTAAAGTTTTTACTAAAC  450

seq1  TTGTGTATTAGTGACTGCCTGAAGTTAGGGTTATTATTGCTGAGATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTAGTGACTGCCTGAAGTTAGGGTTATTATTGCTGAGATACAA  500

seq1  CACCATGACCAAAGCAATCTGAGGATAAAATGGTTTATTGGTTTATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCAAAGCAATCTGAGGATAAAATGGTTTATTGGTTTATCCTT  550

seq1  CCACATTACTGTTCATTATGGAGAGAAGTCAAGAGCTGACCCCGAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTACTGTTCATTATGGAGAGAAGTCAAGAGCTGACCCCGAGGTCA  600

seq1  TGGAGGAGTGCTGCTTTCTAGCTTGTTCTACATAGCTTACTGAGCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGTGCTGCTTTCTAGCTTGTTCTACATAGCTTACTGAGCTTGCT  650

seq1  TCTTTATAGAACATAGGACCACTTGCCCAGGGGTGGCTTTTCAACAACGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAGAACATAGGACCACTTGCCCAGGGGTGGCTTTTCAACAACGG  700

seq1  GCAGGGCAATCTTACATCTATCACTAATTAAGAAAATAGCCAATAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAATCTTACATCTATCACTAATTAAGAAAATAGCCAATAAAGAT  750

seq1  GAAAGGCTTGCCTATTTTCCAGTCTAATGGAGGCATTTTCTCAACTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGCCTATTTTCCAGTCTAATGGAGGCATTTTCTCAACTGAGG  800

seq1  TTTTCTCTTCTCCAGTGACTTTAGTTTTGTCATGTTGACATAAAATTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTCTCCAGTGACTTTAGTTTTGTCATGTTGACATAAAATTAGC  850

seq1  CAGCACAGTGACCATACTGATTATTCTTCAATTAAAGTTCAATTCTTAAA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGCACAGTGACCATACTGATTATTCTTCATTTAAAGTTCAATTCTTAAA  900

seq1  AATGGGACTTTTTTTATTTGTGGAGTTTGATGTGGCCTTTCAATAATACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACTTTTTTTATTTGTGGAGTTTGATGTGGCCTTTCAATAATACG  950

seq1  CATACAACAAGATTGCTATGAGTGGAATTAGATGCCATTGGAAACATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAACAAGATTGCTATGAGTGGAATTAGATGCCATTGGAAACATTTT  1000

seq1  CTAAAGTTGTGGGCATAACAATTACTTATATAATTACTTTGTGCCGTAGT  1050
      || ||||||||||||||   ||||||||||||||||||||||||||||||
seq2  CT-AAGTTGTGGGCATA--CATTACTTATATAATTACTTTGTGCCGTAGT  1047

seq1  TCCCTATATGGAAATTATACTTGTAATAAAATTACCTCA-GAGTC-TGAT  1098
      | |||||||||||||||||||||||||||| |||||||| ||||| ||||
seq2  T-CCTATATGGAAATTATACTTGTAATAAATTTACCTCAGGAGTCTTGAT  1096

seq1  CCCTGTTATAAC-TTAGGAAAGGGTCTAGAATGTT-GCTAACA-CTGAAT  1145
       ||||||||||| |||||||  ||||||| ||||| ||||||| ||||||
seq2  -CCTGTTATAACTTTAGGAA--GGTCTAGGATGTTGGCTAACACCTGAAT  1143

seq1  AAACACGTTTTCCACTACGAACAACA  1171
      || |||| ||| ||||||| ||||||
seq2  AACCACGGTTT-CACTACG-ACAACA  1167


seq1: chr7_146174881_146175248
seq2: B6Ng01-346L24.g_551_1023

seq1  --------------------------------------------------  0
                                                        
seq2  TCATTCTTTTTTTTTTTTAAGTCATAATAATATAGCTTTTATTTTCTTTT  50

seq1  -----------------------------------------------TC-  2
                                                     || 
seq2  TTGTTTGTTTGTTTGTTTTTTTATTAGGTATTTTCCTCATTTACATTTCC  100

seq1  -AT--TCTTTTTTTTTTCAAATTTTTTATTAGATATTTTCTTCATTTACA  49
       ||  | |||||||| |   |||||||||||||||||||||| |||||||
seq2  AATGCTATTTTTTTTGTTTTATTTTTTATTAGATATTTTCTTTATTTACA  150

seq1  TTTCAAATGCTATCCCAAAAGTCCCCTATTATCCCCCCCCCACACACACC  99
      |||||||||||||||||||||| ||||| |||||||||||  | | | ||
seq2  TTTCAAATGCTATCCCAAAAGTTCCCTA-TATCCCCCCCC--CCCCCGCC  197

seq1  CTGCACCCCAACCCACCCACTTCCACTTCTTGGCCCTGGCATTCTCCTGT  149
       ||| |||| ||||||||||| ||||||||||| |||||||||| |||||
seq2  GTGCTCCCCTACCCACCCACTCCCACTTCTTGGTCCTGGCATTCCCCTGT  247

seq1  ACTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAGTGAT  199
      |||||||||||||||||||| |||||||||||||||||| ||||| ||||
seq2  ACTGGGGCATATAAAGTTTGAAAGACCAAGGGGCCTCTCATCCCAATGAT  297

seq1  GGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCT  347

seq1  --GGGGTACTGGTTAG-TTCATATTGTTGTTCCACCTATAGGG-TTGCAG  295
        ||||||||||| || ||||||||||||||| |||||||||| ||||||
seq2  GGGGGGTACTGGTCAGTTTCATATTGTTGTTCTACCTATAGGGTTTGCAG  397

seq1  ATCCCTTCAGCTCC-TTGGGTACTTTCTC-TAGCTCCTCCATT-GGGGTC  342
      |||| || |||||| |||||||||||||| ||| ||||||||| |||| |
seq2  ATCCTTTTAGCTCCTTTGGGTACTTTCTCTTAGATCCTCCATTGGGGGGC  447

seq1  CTTATGTTCCATCCAATAGATGACTG  368
        | |||| |||||||||||||||||
seq2  ACTGTGTTTCATCCAATAGATGACTG  473


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