BAC Information

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BAC

Clone NameB6Ng01-347G03
Chromosome5 (Build37)
Map Location 57,565,249 - 57,566,106
singlet/doubletsinglet
Overlap geneLOC100041349
Upstream geneLOC100041335
Downstream geneLOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347G03.g
ACCGA129000
length856
definitionB6Ng01-347G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccccctgaacaatgttgatcatatgaaatttgaacaaaatataac
ctagaacaaaaataatttgaaaaaatctgaataaatatccaatctgagaa
atgaacataactgttgctccagaatgtaactccatatttatatacagtta
ttgctattatatttgttgctgttgttgttgactcaatgaagctacctttg
atcttttcatggcattgcactaaattatggtagaagtgtattcctggcag
tctgatcatacctccacatgtcatatgtcatccttcatactttgtgtcaa
acctgtgcaatttgaattttaaacttttaacattgagctataccaatcat
ttcagaatggtatcataaagttttcacgtaaatgaatgaaactttgaaaa
atgttattttggagtgaggaatatcagacccagaaaagagtaatatggca
tgtattcacgtatttgtagatgttagctatgaagtcaatgatacttaaga
aacattgcatatgaccagagtttacgtatacagtaaaggccgagaagaag
ggagatcaaactccattagaaagaaaaagataggatagatactatggaca
tatgaggaagtgctgaaatgggaacataatgagggaggattagagagaag
agtggggtagaatatgcagtgacagagccataattaagaggcgtaataag
gagtcacgcggaatcctaacaagatagaaccttgtaaaatatacacatat
gtttagcttgctattgccacactgaccatttgcactacgtttatctaaca
tcgctcagatgaacgatctatccatcttcggaggactttgatttattttt
ttcacg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57565249_57566106
seq2: B6Ng01-347G03.g_66_921

seq1  GAATTCCCCATGAACAATGTTGATCATATGAAATTTGAAGAAAATATAAC  50
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTCCCCCTGAACAATGTTGATCATATGAAATTTGAACAAAATATAAC  50

seq1  CTAGAACAAAAATAATTTGAAAAAATCTGAATAAATATCCAATCTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAAAATAATTTGAAAAAATCTGAATAAATATCCAATCTGAGAA  100

seq1  ATGAACATAACTGTTGCTCCAGAATGTAACTCCATATTTATATACAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATAACTGTTGCTCCAGAATGTAACTCCATATTTATATACAGTTA  150

seq1  TTGCTATTATATTTGTTGCTGTTGTTGTTGACTCAATGAAGCTACCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTATATTTGTTGCTGTTGTTGTTGACTCAATGAAGCTACCTTTG  200

seq1  ATCTTTTCATGGCATTGCACTAAATTATGGTAGAAGTGTATTCATAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  ATCTTTTCATGGCATTGCACTAAATTATGGTAGAAGTGTATTCCTGGCAG  250

seq1  TCTGATCATACCTCCACATGTCATATGTCATCCTTCATACTTTGTGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCATACCTCCACATGTCATATGTCATCCTTCATACTTTGTGTCAA  300

seq1  ACCTGTGCAATTTGAATTTTAAACTTTTAACATTGAGCTATACCAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCAATTTGAATTTTAAACTTTTAACATTGAGCTATACCAATCAT  350

seq1  TTCAGAATGGTATCATAAAGTTTTCAGGTAAATGAATGAAACTTTGAAAA  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAGAATGGTATCATAAAGTTTTCACGTAAATGAATGAAACTTTGAAAA  400

seq1  ATGTTATTTTGGAGTGAGGAATATCAGACCCAGAAAAGAGTAATATGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTTGGAGTGAGGAATATCAGACCCAGAAAAGAGTAATATGGCA  450

seq1  TGTATTCACGTATTTGTAGATATTAGCTATGAAGTCAATGATACTTAAGA  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTATTCACGTATTTGTAGATGTTAGCTATGAAGTCAATGATACTTAAGA  500

seq1  AACATTGCATATGACCAGAGTTTAGGTATACAGTAAAGGCCTAGAAGAAG  550
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AACATTGCATATGACCAGAGTTTACGTATACAGTAAAGGCCGAGAAGAAG  550

seq1  GGAGATCAAACTCCATTAGAAAGAAAAA-ATAGGATAGATACTATGGACA  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAGATCAAACTCCATTAGAAAGAAAAAGATAGGATAGATACTATGGACA  600

seq1  TATGAGGAAGTGCTGAAATGGGAACATAATGAGGGAGGATTAGAGAGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAAGTGCTGAAATGGGAACATAATGAGGGAGGATTAGAGAGAAG  650

seq1  AATGGGGTAGAATATGCAGTGACAGAGCCATAATTAAGAGGCGTAATAAG  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTAGAATATGCAGTGACAGAGCCATAATTAAGAGGCGTAATAAG  700

seq1  GAGTAACGGGGAATCCTAACAAAATAGAAACCTTGTAAAATATACACATA  749
      |||| ||| ||||||||||||| |||| ||||||||||||||||||||||
seq2  GAGTCACGCGGAATCCTAACAAGATAG-AACCTTGTAAAATATACACATA  749

seq1  TTTTTAGCTTGCTTTTGCCACACTGGCCATTTGCACTACGTTAATCTAGC  799
      | ||||||||||| ||||||||||| |||||||||||||||| ||||| |
seq2  TGTTTAGCTTGCTATTGCCACACTGACCATTTGCACTACGTTTATCTAAC  799

seq1  AATCGCTCAGCATGAACGATCTATCCATCTTCGGAGGTCTTTGATTTCTT  849
       ||||||||| |||||||||||||||||||||||||| ||||||||| ||
seq2  -ATCGCTCAG-ATGAACGATCTATCCATCTTCGGAGGACTTTGATTTATT  847

seq1  TTTTTCAGG  858
      ||||||| |
seq2  TTTTTCACG  856