BAC Information

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BAC

Clone NameB6Ng01-347K09
Chromosome5 (Build37)
Map Location 84,891,445 - 84,995,719
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347K09.bB6Ng01-347K09.g
ACCGA129189GA129190
length1,1961,160
definitionB6Ng01-347K09.b B6Ng01-347K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,994,508 - 84,995,719)(84,891,445 - 84,892,607)
sequence
gaattcacaaaagagaaagcatacttccaggtgtctgttttattgcttag
ctttcctgagaaatatctctaagaaatactgggagagtgataaagtcggt
ataaaaaccggtgccaaatctgctgaatgtccctttgaggccaagtaaat
tctctgggagcattgagatgtatagccaagtcctttgtttgtttgtttgt
ttgtttgtttgttttttgtttttttttgttttttggggttttttgttttt
gtttttgtttttttgagacagggtttcttgtgtagccctggctgtcctgg
aactcactctgtaatcgaggccagccttgaactcagaaatctgtctgcct
ctgcttcccaagtgctgggattaaaggtgtgcgccaccgctgcccagcag
ccaagtccttctgaaactccagtttttaacaacctaaaatctgtaatgtt
ttccttactggcaatatcaaatacaatggaattgcactgagaaagaatat
taagagagttgacatattatttttcataaagaaatagaaactgagtttca
acaattaaagacagatgaatgcttaaaaactaaataaaatgcatgtgtat
ttggctgcctgatacaggacacagtaacattagaataaaatctcaacatc
tataggagttttgaaattccttcattctctaagtcattgccttgttctcc
ttcagaacaatgttgaacgtggccctagaatgtaaagggtcaagccttcc
tttcaagaacaagaggtcactaccattgacatcactggaaattgcctgtc
gtcctttaagcctgcattgctcagagttcatgtcttctgaataattccaa
gaacagaagtaacagtttgatgtgaatgagagggtaaatgcgtgtgccac
aattctcagttgctgtcacagaaattggagatggaactcattgcaatcag
gggagatttttgtgaggaataataaagagagcgctgtcactgaaattgtt
ctgataaggaggaatcgaacagaaaggagaattattattttgaatctgac
atcttctttcctcttgaaattccagtttgtatttgactgacttgaagttg
ctttgtgcatgagggcacgcatatgaagcgttatgtcaggagaaggggga
ggaaccccgagaccgtccatatcctctgtgccatcaatatctactg

gaattcttgagttatttgggggaggctaagatgagaactgaggtggcctc
agtagctgccattagccagggatgtttcttccctcttcaggttggagcaa
ggtggtcagaaaatcagaccctagtgttctcctgctgcaaagctaatgtt
gatgacaattgtgtcacttgtggtcattgcatggacatctacagatgact
catgagcttcctctgacgagtatgtaggtaagtttcctggagcagttata
aaaggtttagaacagctcatgctaggcagtcatagaggacaacttacaga
agcagctatctgagttaggctctcattacttccagtgagaagcatgacac
tgagctctggctgctgctgggcctccataaagggcaacagctctgttcaa
tgctgaatgctgctgggtactaagagttgctaagtttttccggttggttt
cagtctaagaagggagcaaccggtaacactcacttttatctattttcaac
cgttgtgctgtaccttctgcgttctcccttatggaaacggaatgaattaa
aattctaatttacataatacatggaagttaatttaagaatgatagtagac
cagaatttgaaacttaaactataaagctttaagaaaagaggagtcataaa
aatgatcttttgggtatttagttttcaaagaaatgcaaatttaaaaaatg
agctatagctgtacaatcattctataggctgacagtattcaaatgctaat
tttgccatcaaaccactcatactttcagccattggcaatgatagtgaaaa
tgatacaatcatccatggaataaaggtttcaaagattctataaagataaa
catatgacatggaattctcaggagcaggtatagatgcctgcccccaaaga
atgcttttaccaacaaataaacttccaactagatgttttcagcagttcat
tcttaaaaattgatgtctatattataactcatatacctgcaataagaaaa
gtattggataaaccatacatattaataaaataaatagtttcttcaggacc
caattttccacaaataaaaaatgttatgtactattgcaacatgatgaaat
catgagttgagccgaagaaaggacttgccaagaaaacatactggtgaatc
tgatgtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84994508_84995719
seq2: B6Ng01-347K09.b_51_1246 (reverse)

seq1  CAGTAGGATAATTGATGGCAATGAGGATAT-GACAGTCTCGTGTGTTCCT  49
      ||||| ||| ||||||||||  |||||||| ||| |||||| | ||||||
seq2  CAGTA-GAT-ATTGATGGCACAGAGGATATGGACGGTCTCG-GGGTTCCT  47

seq1  CCCCTCTCTCCTTGACATTACAGCTTTCATTATGC-TGCCTTCATGCAAC  98
      ||||  ||||| |||||| || || |||| ||||| |||| |||||| ||
seq2  CCCCCTTCTCC-TGACATAAC-GC-TTCA-TATGCGTGCCCTCATGC-AC  92

seq1  AAAGCAAACTACAAAGTCAGTC-AATACAAACTGAAATTTCAAGAGGGAA  147
      ||||| |||| | ||||||||| ||||||||||| ||||||||||||  |
seq2  AAAGC-AACTTC-AAGTCAGTCAAATACAAACTGGAATTTCAAGAGG--A  138

seq1  AAGAAAGATGTCAGATTTCAAAATAATAATTCTTCCTTTCTGTTCGATTC  197
      ||| ||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AAG-AAGATGTCAGA-TTCAAAATAATAATTC-TCCTTTCTGTTCGATTC  185

seq1  CTCCTTTATTCAGAACCACTTTCAGTGACAGCGCTTCTCTTTATTATTCC  247
      ||||||   |||||| || ||||||||||||||| |||||||||||||||
seq2  CTCCTT--ATCAGAA-CAATTTCAGTGACAGCGC-TCTCTTTATTATTCC  231

seq1  TTCACAAAAATCTCCCCTGATTGCAATGAGTTCCATCTCCAATTTCTGTG  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCACAAAAATCTCCCCTGATTGCAATGAGTTCCATCTCCAATTTCTGTG  280

seq1  ACAGCAACTGAGAATTGTGGCACACGCATTTACCCTCTCATTCACATCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTGAGAATTGTGGCACACGCATTTACCCTCTCATTCACATCAA  330

seq1  ACTGTTACTTCTGTTCTTGGAATTATTCAGAAGACATGAACTCTGAGCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTACTTCTGTTCTTGGAATTATTCAGAAGACATGAACTCTGAGCAA  380

seq1  TGCAGGCTTAAAGGAC-ACAGGCAATTTCCAGTGATGTCAATGGTAGTGA  446
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCAGGCTTAAAGGACGACAGGCAATTTCCAGTGATGTCAATGGTAGTGA  430

seq1  CCTCTTGTTCTTGAAAGGAAGGCTTGACCCTTTACATTCTAGGGCCACGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTCTTGAAAGGAAGGCTTGACCCTTTACATTCTAGGGCCACGT  480

seq1  TCAACATTGTTCTGAAGGAGAACAAGGCAATGACTTAGAGAATGAAGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTGTTCTGAAGGAGAACAAGGCAATGACTTAGAGAATGAAGGAA  530

seq1  TTTCAAAACTCCTATAGATGTTGAGATTTTATTCTAATGTTACTGTGTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACTCCTATAGATGTTGAGATTTTATTCTAATGTTACTGTGTCC  580

seq1  TGTATCAGGCAGCCAAATACACATGCATTTTATTTAGTTTTTAAGCATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGGCAGCCAAATACACATGCATTTTATTTAGTTTTTAAGCATTC  630

seq1  ATCTGTCTTTAATTGTTGAAACTCAGTTTCTATTTCTTTATGAAAAATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTTAATTGTTGAAACTCAGTTTCTATTTCTTTATGAAAAATAA  680

seq1  TATGTCAACTCTCTTAATATTCTTTCTCAGTGCAATTCCATTGTATTTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAACTCTCTTAATATTCTTTCTCAGTGCAATTCCATTGTATTTGA  730

seq1  TATTGCCAGTAAGGAAAACATTACAGATTTTAGGTTGTTAAAAACTGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCAGTAAGGAAAACATTACAGATTTTAGGTTGTTAAAAACTGGAG  780

seq1  TTTCAGAAGGACTTGGCTGCTGGGCAGCGGTGGCGCACACCTTTAATCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGGACTTGGCTGCTGGGCAGCGGTGGCGCACACCTTTAATCCC  830

seq1  AGCACTTGGGAAGCAGAGGCAGACAGATTTCTGAGTTCAAGGCTGGCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAAGCAGAGGCAGACAGATTTCTGAGTTCAAGGCTGGCCTC  880

seq1  GATTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAGAAACCCTGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAGAAACCCTGTC  930

seq1  TCAAAAAAACAAAAACAAAAACAAAAAACCCCAAAAAACAAAAAAAAACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAACAAAAACAAAAACAAAAAACCCCAAAAAACAAAAAAAAACA  980

seq1  AAAAACAAACAAACAAACAAACAAACAAACAAAGGACTTGGCTATACATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAACAAACAAACAAACAAAGGACTTGGCTATACATC  1030

seq1  TCAATGCTCCCAGAGAATTTACTTGGCCTCAAAGGGACATTCAGCAGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCCCAGAGAATTTACTTGGCCTCAAAGGGACATTCAGCAGATT  1080

seq1  TGGCACCGGTTTTTATACCGACTTTATCACTCTCCCAGTATTTCTTAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCGGTTTTTATACCGACTTTATCACTCTCCCAGTATTTCTTAGAG  1130

seq1  ATATTTCTCAGGAAAGCTAAGCAATAAAACAGACACCTGGAAGTATGCTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCAGGAAAGCTAAGCAATAAAACAGACACCTGGAAGTATGCTT  1180

seq1  TCTCTTTTGTGAATTC  1212
      ||||||||||||||||
seq2  TCTCTTTTGTGAATTC  1196


seq1: chr5_84891445_84892607
seq2: B6Ng01-347K09.g_67_1226

seq1  GAATTCTTGAGTTATTTGGGGGAGGCTAAGATGAGAACTGAGGTGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTTATTTGGGGGAGGCTAAGATGAGAACTGAGGTGGCCTC  50

seq1  AGTAGCTGCCATTAGCCAGGGATGTTTCTTCCCTCTTCAGGTTGGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGCCATTAGCCAGGGATGTTTCTTCCCTCTTCAGGTTGGAGCAA  100

seq1  GGTGGTCAGAAAATCAGACCCTAGTGTTCTCCTGCTGCAAAGCTAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAGAAAATCAGACCCTAGTGTTCTCCTGCTGCAAAGCTAATGTT  150

seq1  GATGACAATTGTGTCACTTGTGGTCATTGCATGGACATCTACAGATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAATTGTGTCACTTGTGGTCATTGCATGGACATCTACAGATGACT  200

seq1  CATGAGCTTCCTCTGACGAGTATGTAGGTAAGTTTCCTGGAGCAGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTTCCTCTGACGAGTATGTAGGTAAGTTTCCTGGAGCAGTTATA  250

seq1  AAAGGTTTAGAACAGCTCATGCTAGGCAGTCATAGAGGACAACTTACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTAGAACAGCTCATGCTAGGCAGTCATAGAGGACAACTTACAGA  300

seq1  AGCAGCTATCTGAGTTAGGCTCTCATTACTTCCAGTGAGAAGCATGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTATCTGAGTTAGGCTCTCATTACTTCCAGTGAGAAGCATGACAC  350

seq1  TGAGCTCTGGCTGCTGCTGGGCCTCCATAAAGGGCAACAGCTCTGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGGCTGCTGCTGGGCCTCCATAAAGGGCAACAGCTCTGTTCAA  400

seq1  TGCTGAATGCTGCTGGGTACTAAGAGTTGCTAAGTTTTTCCGGTTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGCTGCTGGGTACTAAGAGTTGCTAAGTTTTTCCGGTTGGTTT  450

seq1  CAGTCTAAGAAGGGAGCAACCGGTAACACTCACTTTTATCTATTTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAGAAGGGAGCAACCGGTAACACTCACTTTTATCTATTTTCAAC  500

seq1  CGTTGTGCTGTACCTTCTGCGTTCTCCCTTATGGAAACGGAATGAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGCTGTACCTTCTGCGTTCTCCCTTATGGAAACGGAATGAATTAA  550

seq1  AATTCTAATTTACATAATACATGGAAGTTAATTTAAGAATGATAGTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATTTACATAATACATGGAAGTTAATTTAAGAATGATAGTAGAC  600

seq1  CAGAATTTGAAACTTAAACTATAAAGCTTTAAGAAAAGAGGAGTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGAAACTTAAACTATAAAGCTTTAAGAAAAGAGGAGTCATAAA  650

seq1  AATGATCTTTTGGGTATTTAGTTTTCAAAGAAATGCAAATTTAAAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTTTGGGTATTTAGTTTTCAAAGAAATGCAAATTTAAAAAATG  700

seq1  AGCTATAGCTGTACAATCATTCTATAGGCTGACAGTATTCAAATGCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGCTGTACAATCATTCTATAGGCTGACAGTATTCAAATGCTAAT  750

seq1  TTTGCCATCAAACCACTCATACTTTCAGCCATTGGCAATGATAGTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCAAACCACTCATACTTTCAGCCATTGGCAATGATAGTGAAAA  800

seq1  TGATACAATCATCCATGGAATAAAGGTTTCAAAGATTCTATAAAGATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAATCATCCATGGAATAAAGGTTTCAAAGATTCTATAAAGATAAA  850

seq1  CATATGACATGGAATTCTCAGGAGCAGGTATAGATGCCTGCCCCCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACATGGAATTCTCAGGAGCAGGTATAGATGCCTGCCCCCAAAGA  900

seq1  ATGCTTTTACCAACAAATAAACTTCCAACTAGATGTTTTCAGCAGTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGCTTTTACCAACAAATAAACTTCCAACTAGATGTTTTCAGCAG-TTCA  949

seq1  ATCTTAAAAATTGATGTCTATA-TATAACTCATATACCTGCAATAAGAAA  999
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTTAAAAATTGATGTCTATATTATAACTCATATACCTGCAATAAGAAA  999

seq1  AGTATTGGATAAACCATACATATTAATATAATAAATAAGTTTTCTTCAGG  1049
      |||||||||||||||||||||||||||| ||||||||   ||||||||||
seq2  AGTATTGGATAAACCATACATATTAATAAAATAAATA--GTTTCTTCAGG  1047

seq1  ACCCAATTTT-CACAAATAAAAAATGTTATGTTACTATTGCAACATGAAT  1098
      |||||||||| |||||||||||||||||||| ||||||||||||||| ||
seq2  ACCCAATTTTCCACAAATAAAAAATGTTATG-TACTATTGCAACATG-AT  1095

seq1  GAAATTCATGAG-TGAGCCAGAGAAA-GACATGCACAGGAAAACATACT-  1145
      |||| ||||||| ||||||  ||||| ||| ||| || ||||||||||| 
seq2  GAAA-TCATGAGTTGAGCCGAAGAAAGGACTTGC-CAAGAAAACATACTG  1143

seq1  GTGATATTGTATGTATCT  1163
      |||| ||   ||||||||
seq2  GTGA-ATCTGATGTATCT  1160


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