BAC Information

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BAC

Clone NameB6Ng01-347L21
Chromosome5 (Build37)
Map Location 17,454,099 - 17,632,620
singlet/doubletdoublet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347L21.bB6Ng01-347L21.g
ACCGA129254GA129255
length1,140844
definitionB6Ng01-347L21.b B6Ng01-347L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,454,099 - 17,455,254)(17,631,777 - 17,632,620)
sequence
gaattcttttggataactgctaccacatgcaaagtatagggaaaaaatcc
ttagacactcaagtagtgctagatgaaaggcaaggccactgtgccaaaat
gacatgtacagtcatcactgtgacctcctggttttaaatttttttctggg
tgcctccttttggtatcatcctacccatgctcctgagttttcacacattt
atattttctcttctccatctgtttgtgtacaggcttatttaggcatacat
gcattcaaatttgtgtgttcatgagcatctgtgcacatgcatgcacatgt
gtgcagaggccaaaagtcaaccttgaatattgatcctcaggagcaagtct
attcggccaccagtctccccacatatacctttctagcctttccagcaccg
aagttacaaaatttactattatccccaattgttttttacattacttctgc
atattgaattcagatatcaatgcatatatgcaagtagtgtgcaatctgac
tatgctctcaagccctagctttctactttaatttctagcaaagtcttttt
ttaacagattctttgcagctcattcacttcaaaggagaaagtgaaataga
acctcaaacaatttgttctctcacaatgccacatggtaggaaatttaaat
agaataaaaagtttataattctgaaaagtggaacattttttataaagttg
gtagtgatttttcaaacaatgtaacactcttcttctagtgattctcttaa
gtatgtctaaatgagattttgtgggacagaaaatgcataggaatctaaat
aatgcatacatcattgtacatttcatagttatacattttcatttgtaaaa
gagggctagtgcggaggcctacagtgatagaatattctgcagagaagggt
gtggcatttgataaggtacacattatcagtagaaggagatttctggagaa
agccagcattacttggcttgcattctaacaaggtagtactcttcgggcta
aatggtttgctcagcagccacagcagatttcttatgagtagcggaagaag
ctatgctagatgcattgtatgagagaatataatataataaataagaggat
atgagccaagtctagtgaaatgtttatagctatctcactg

gaattcaactgttttgggtaatttctgcttagatctatgtaatgatttgt
cactttaaaatatgaattctatggagcaattatattttctcatttgagtg
aaggacatgaggcaaatatttgctgagggaagaacattagtatacttagc
tatgcagaacacaatggctaacctgacatttattcgcatatacatcaagt
ttattgtctgtctgttaatcatattcttccctagaactagctgttttctt
attattaaattttcttatgctttcttaataagcaagaaaataatattagt
gtcggatcttggctaactttttaataatcatctacttactgtgatttgca
cttctggggaaatataaaaaataacttcttatgtttatccttagaagtct
gataactgacctatgatcaatcatctctatatatagatcatgtagaactt
tgtttttccagacactattgcatatgccagcaagattttgctgaaaggac
cctgatataggtgtcttgtatgaggctatgccagtgtctgacaaacacag
aagtggatgctcacagttatctataggatggaacacagggccctcaatac
aagagctagagaaagtacccaaggagctaaagggttctgcaaccctatag
gtggaaaaacaatatgaactaaccagtacccccagagctagtgtctctag
ctgcatatgtagcagaagatagcctagtcggccatcattgggaagagagg
ccccttggtcttgcaaactttatatgacacagtacagtggaaacaccagg
gccaagaagtgggagtaggtgggtagaggagctggggttggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17454099_17455254
seq2: B6Ng01-347L21.b_47_1186

seq1  GAATTCTTTTGGATAACTGCTACCACATGCAAAGTATAGGGAAAAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGATAACTGCTACCACATGCAAAGTATAGGGAAAAAATCC  50

seq1  TTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGGCCACTGTGCCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGGCCACTGTGCCAAAAT  100

seq1  GACATGTACAGTCATCACTGTGACCTCCTGGTTTTAAATTTTTTTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTACAGTCATCACTGTGACCTCCTGGTTTTAAATTTTTTTCTGGG  150

seq1  TGCCTCCTTTTGGTATCATCCTACCCATGCTCCTGAGTTTTCACACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTTTGGTATCATCCTACCCATGCTCCTGAGTTTTCACACATTT  200

seq1  ATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCTTATTTAGGCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCTTATTTAGGCATACAT  250

seq1  GCATTCAAATTTGTGTGTTCATGAGCATCTGTGCACATGCATGCACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAAATTTGTGTGTTCATGAGCATCTGTGCACATGCATGCACATGT  300

seq1  GTGCAGAGGCCAAAAGTCAACCTTGAATATTGATCCTCAGGAGCAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGCCAAAAGTCAACCTTGAATATTGATCCTCAGGAGCAAGTCT  350

seq1  ATTCGGCCACCAGTCTCCCCACATATACCTTTCTAGCCTTTCCAGCACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGCCACCAGTCTCCCCACATATACCTTTCTAGCCTTTCCAGCACCG  400

seq1  AAGTTACAAAATTTACTATTATCCCCAATTGTTTTTTACATTACTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAAATTTACTATTATCCCCAATTGTTTTTTACATTACTTCTGC  450

seq1  ATATTGAATTCAGATATCAATGCATATATGCAAGTAGTGTGCAATCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATTCAGATATCAATGCATATATGCAAGTAGTGTGCAATCTGAC  500

seq1  TATGCTCTCAAGCCCTAGCTTTCTACTTTAATTTCTAGCAAAGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTCAAGCCCTAGCTTTCTACTTTAATTTCTAGCAAAGTCTTTTT  550

seq1  TTAACAGATTCTTTGCAGCTCATTCACTTCAAAGGAGAAAGTGAAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGATTCTTTGCAGCTCATTCACTTCAAAGGAGAAAGTGAAATAGA  600

seq1  ACCTCAAACAATTTGTTCTCTCACAATGCCACATGGTAGGAAATTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAACAATTTGTTCTCTCACAATGCCACATGGTAGGAAATTTAAAT  650

seq1  AGAATAAAAAGTTTATAATTCTGAAAAGTGGAACATTTTTTATAAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAGTTTATAATTCTGAAAAGTGGAACATTTTTTATAAAGTTG  700

seq1  GTAGTGATTTTTCAAACAATGTAACACTCTTCTTCTAGTGATTCTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATTTTTCAAACAATGTAACACTCTTCTTCTAGTGATTCTCTTAA  750

seq1  GTATGTCTAAATGAGATTTTGTGGGACAGAAAATGCATAGGAATCTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTAAATGAGATTTTGTGGGACAGAAAATGCATAGGAATCTAAAT  800

seq1  AATGCATACATCATTGTACATTTCATAGTTATACATTTTCATTTGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACATCATTGTACATTTCATAGTTATACATTTTCATTTGTAAAA  850

seq1  GAGGGCTAGTGCGGAGGCCTACAGTGATAGAATATTCTGCAGAGAAGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTAGTGCGGAGGCCTACAGTGATAGAATATTCTGCAGAGAAGGGT  900

seq1  GTGGCATTTGATAAGGTACACATTATCAGTAGAAGGAGATTTCTGGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTTGATAAGGTACACATTATCAGTAGAAGGAGATTTCTGGAGAA  950

seq1  AGCCAGCATTACTTGGCTTGCATTCTAACAAGGGTAGTAACTCTTCGGGG  1000
      ||||||||||||||||||||||||||||||| |||||| ||||||| |||
seq2  AGCCAGCATTACTTGGCTTGCATTCTAACAA-GGTAGT-ACTCTTC-GGG  997

seq1  CTAAATGGTTTGCTCAGCAGCCACAGCAGATTTCTTATGAGGTAGCGGAA  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAATGGTTTGCTCAGCAGCCACAGCAGATTTCTTATGA-GTAGCGGAA  1046

seq1  GAAGGCTATGCTTAGGATGCATTGTATGAGAGAATAATAAATAATAAAAT  1100
      ||| ||||||||   ||||||||||||||||||||     |||||| |||
seq2  GAA-GCTATGCT--AGATGCATTGTATGAGAGAAT-----ATAATATAAT  1088

seq1  AAAATAAAGAAGAAAAGAGCAAAGTCTAGTGAAAATGTTTATTAAGCTA-  1149
      |||   |||| || | |||| |||||||||| ||||||||||  ||||| 
seq2  AAA--TAAGAGGATATGAGCCAAGTCTAGTG-AAATGTTTAT--AGCTAT  1133

seq1  CTCACTG  1156
      |||||||
seq2  CTCACTG  1140


seq1: chr5_17631777_17632620
seq2: B6Ng01-347L21.g_67_910 (reverse)

seq1  CCCCCAACCCCAGCTCCTCTACCCACCTACTCCCACTTCTTGGCCCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCCCAGCTCCTCTACCCACCTACTCCCACTTCTTGGCCCTGGT  50

seq1  GTTTCCACTGTACTGTGTCATATAAAGTTTGCAAGACCAAGGGGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTGTACTGTGTCATATAAAGTTTGCAAGACCAAGGGGCCTCTC  100

seq1  TTCCCAATGATGGCCGACTAGGCTATCTTCTGCTACATATGCAGCTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATGATGGCCGACTAGGCTATCTTCTGCTACATATGCAGCTAGAG  150

seq1  ACACTAGCTCTGGGGGTACTGGTTAGTTCATATTGTTTTTCCACCTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCTCTGGGGGTACTGGTTAGTTCATATTGTTTTTCCACCTATAG  200

seq1  GGTTGCAGAACCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCTTGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGAACCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCTTGTATTG  250

seq1  AGGGCCCTGTGTTCCATCCTATAGATAACTGTGAGCATCCACTTCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTGTGTTCCATCCTATAGATAACTGTGAGCATCCACTTCTGTGT  300

seq1  TTGTCAGACACTGGCATAGCCTCATACAAGACACCTATATCAGGGTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGACACTGGCATAGCCTCATACAAGACACCTATATCAGGGTCCTT  350

seq1  TCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGAAAAACAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGAAAAACAAAGTTC  400

seq1  TACATGATCTATATATAGAGATGATTGATCATAGGTCAGTTATCAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATCTATATATAGAGATGATTGATCATAGGTCAGTTATCAGACTT  450

seq1  CTAAGGATAAACATAAGAAGTTATTTTTTATATTTCCCCAGAAGTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATAAACATAAGAAGTTATTTTTTATATTTCCCCAGAAGTGCAAA  500

seq1  TCACAGTAAGTAGATGATTATTAAAAAGTTAGCCAAGATCCGACACTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAAGTAGATGATTATTAAAAAGTTAGCCAAGATCCGACACTAAT  550

seq1  ATTATTTTCTTGCTTATTAAGAAAGCATAAGAAAATTTAATAATAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTTGCTTATTAAGAAAGCATAAGAAAATTTAATAATAAGAAA  600

seq1  ACAGCTAGTTCTAGGGAAGAATATGATTAACAGACAGACAATAAACTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGTTCTAGGGAAGAATATGATTAACAGACAGACAATAAACTTGA  650

seq1  TGTATATGCGAATAAATGTCAGGTTAGCCATTGTGTTCTGCATAGCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCGAATAAATGTCAGGTTAGCCATTGTGTTCTGCATAGCTAAG  700

seq1  TATACTAATGTTCTTCCCTCAGCAAATATTTGCCTCATGTCCTTCACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAATGTTCTTCCCTCAGCAAATATTTGCCTCATGTCCTTCACTCA  750

seq1  AATGAGAAAATATAATTGCTCCATAGAATTCATATTTTAAAGTGACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAATATAATTGCTCCATAGAATTCATATTTTAAAGTGACAAAT  800

seq1  CATTACATAGATCTAAGCAGAAATTACCCAAAACAGTTGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATAGATCTAAGCAGAAATTACCCAAAACAGTTGAATTC  844


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