BAC Information

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BAC

Clone NameB6Ng01-347M21
Chromosome5 (Build37)
Map Location 136,291,363 - 136,292,469
singlet/doubletsinglet
Overlap gene2900083I11Rik
Upstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2
Downstream geneHspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347M21.bB6Ng01-347M21.g
ACCGA129296GA129297
length1,103414
definitionB6Ng01-347M21.b B6Ng01-347M21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctataagaataaaatcctggctggttggtggcacatgcctttaat
cctagcactcagaaggcagaggcaggaggatctctctgagctcaaggcca
acgtggtctggttttacagagctagttccaggacaaccagggctacacag
agagatcttgtctccaaaaaaaaaaaaatctgtcattattattattatta
ttattattattattattattaaatagaatccaatgtgcaccaccatctgg
atcaatataatttacacacagtgggtatctctgtgttcctgggcactgta
tgagccatgaggacacaggggtcaatctgactctgaccttcaccttgaag
attccctagagcacttctggggactgacagttacaaccctttgaggttcg
gctagatgggagctctctacagagatgtgggccacaggaggaggcccctg
ggagagctggtgctctctgtggccctggaagagtgataaggaagatgcag
agaagtggtacccagcatagcaagagcaatgacatggagaggtggaaagt
ccttggtgagccagggccagtggaggatgcaggaggatctagagcagtca
tctagactcaacctgggggtcacaactacttttgtgcagagtcaaaagac
cctttcacaggggtcaaccatgacaattggaaaacacagatatttacgtt
atgattctttttttttaaaggtttatttatttatgagtgtgctgtagctt
cttcggatgcaccagaaaaaggcatcagatcccattatagatggttgtga
gccaccatctggttgctgggaattgaactcaggacctctgaaagagcagt
ctgtgctcttaactgctaagccgtctctccagccctatattatgattctt
aacagtagcaaataacaaatacaaagtagcaacaaaaatttattttatgg
ttgggggtcaccacaccatgaggaactgtattaaagggtcacagcattag
gaaggttgagaccactgaccagagtatcaaggcaactttggggttcatca
tctgaatagagagcagaggagaacaggagggatagagggaaggtatggga
ggg
aaggtaagcctcagctacataataggtttgaggttagcctatgccacgtc
agacccttttttcgttttgttttgttttgttttttcgagacagggtttct
ctgtatagccctggcagtcctggaactcattctggtagaccaggccgggc
cttgaactcagaaatccacctgcctctgcctcccgagtgctgggattaaa
ggcgtgcgccaccaccgcccagcgtgtcagacctcttttaaggcaaggag
ggcaggacaaaaacttttgcttccctctcatcctctcctccagttctctt
gtgtggagataaaaaggcttcacatagggctgggggcgaggctcactggt
agagcatctgcctagaatcccacaatgtgggggctgggggcgtggctcaa
tggtagagccccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136291363_136292469
seq2: B6Ng01-347M21.b_49_1151

seq1  GAATTCTATAAGAATAAAATCCTGGCTGGTTGGTGGCACATGCCTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAGAATAAAATCCTGGCTGGTTGGTGGCACATGCCTTTAAT  50

seq1  CCTAGCACTCAGAAGGCAGAGGCAGGAGGATCTCTCTGAGCTCAAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTCAGAAGGCAGAGGCAGGAGGATCTCTCTGAGCTCAAGGCCA  100

seq1  ACGTGGTCTGGTTTTACAGAGCTAGTTCCAGGACAACCAGGGCTACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTCTGGTTTTACAGAGCTAGTTCCAGGACAACCAGGGCTACACAG  150

seq1  AGAGATCTTGTCTCCAAAAAAAAAAAAATCTGTCATTATTATTATTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTTGTCTCCAAAAAAAAAAAAATCTGTCATTATTATTATTATTA  200

seq1  TTATTATTATTATTATTATTAAATAGAATCCAATGTGCACCACCATCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTAAATAGAATCCAATGTGCACCACCATCTGG  250

seq1  ATCAATATAATTTACACACAGTGGGTATCTCTGTGTTCCTGGGCACTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATAATTTACACACAGTGGGTATCTCTGTGTTCCTGGGCACTGTA  300

seq1  TGAGCCATGAGGACACAGGGGTCAATCTGACTCTGACCTTCACCTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGAGGACACAGGGGTCAATCTGACTCTGACCTTCACCTTGAAG  350

seq1  ATTCCCTAGAGCACTTCTGGGGACTGACAGTTACAACCCTTTGAGGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAGAGCACTTCTGGGGACTGACAGTTACAACCCTTTGAGGTTCG  400

seq1  GCTAGATGGGAGCTCTCTACAGAGATGTGGGCCACAGGAGGAGGCCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGGGAGCTCTCTACAGAGATGTGGGCCACAGGAGGAGGCCCCTG  450

seq1  GGAGAGCTGGTGCTCTCTGTGGCCCTGGAAGAGTGATAAGGAAGATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTGGTGCTCTCTGTGGCCCTGGAAGAGTGATAAGGAAGATGCAG  500

seq1  AGAAGTGGTACCCAGCATAGCAAGAGCAATGACATGGAGAGGTGGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGTACCCAGCATAGCAAGAGCAATGACATGGAGAGGTGGAAAGT  550

seq1  CCTTGGTGAGCCAGGGCCAGTGGAGGATGCAGGAGGATCTAGAGCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGAGCCAGGGCCAGTGGAGGATGCAGGAGGATCTAGAGCAGTCA  600

seq1  TCTAGACTCAACCTGGGGGTCACAACTACTTTTGTGCAGAGTCAAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTCAACCTGGGGGTCACAACTACTTTTGTGCAGAGTCAAAAGAC  650

seq1  CCTTTCACAGGGGTCAACCATGACAATTGGAAAACACAGATATTTACGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACAGGGGTCAACCATGACAATTGGAAAACACAGATATTTACGTT  700

seq1  ATGATTCTTTTTTTTTAAAGGTTTATTTATTTATGAGTGTGCTGTAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTTTTTTTTAAAGGTTTATTTATTTATGAGTGTGCTGTAGCTT  750

seq1  CTTCGGATGCACCAGAAAAAGGCATCAGATCCCATTATAGATGGTTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGATGCACCAGAAAAAGGCATCAGATCCCATTATAGATGGTTGTGA  800

seq1  GCCACCATCTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATCTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGT  850

seq1  CTGTGCTCTTAACTGCTAAGCCGTCTCTCCAGCCCTATATTATGATTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTTAACTGCTAAGCCGTCTCTCCAGCCCTATATTATGATTCTT  900

seq1  AACAGTAGCAAAATAACAAATACAAAGTAGCAACAAAAATTTATTTTATG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGC-AAATAACAAATACAAAGTAGCAACAAAAATTTATTTTATG  949

seq1  GTTGGGGGTCACCACACCATGAGGAACTGTATTAAAGGGTCACAGCATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGTCACCACACCATGAGGAACTGTATTAAAGGGTCACAGCATTA  999

seq1  GGAAGGTTGAGAACCACTGACCAAGAGTATCAGGGCAACTTTGGGGTTCA  1050
      ||||||||||| |||||||||| ||||||||| |||||||||||||||||
seq2  GGAAGGTTGAG-ACCACTGACC-AGAGTATCAAGGCAACTTTGGGGTTCA  1047

seq1  TCATCTGAAATAGAGAGCAGGAGGGAGACAAGGAGGGATAGA-GGAAGGG  1099
      ||||||| ||||||||||||   |||||  |||||||||||| |||||| 
seq2  TCATCTG-AATAGAGAGCAG--AGGAGAACAGGAGGGATAGAGGGAAGGT  1094

seq1  AT-GGAGGG  1107
      || ||||||
seq2  ATGGGAGGG  1103