BAC Information

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BAC

Clone NameB6Ng01-348A05
Chromosome5 (Build37)
Map Location 13,735,090 - 13,736,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348A05.b
ACCGA129442
length1,115
definitionB6Ng01-348A05.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcattaatctctccaaatatctataaaacaaaggtgccttccgg
tagccaacttctcccctcactcacctacagtgtgaataaactacaaggac
acacccttgccttaaagtcacacccctgtattctccaagaaggactgaca
tctaccaaaaatgtaggacaaaacaaatacttcctttgttaaaaaacaaa
gaagtctttaaaaactgaaaagtcattgctctctcccatttctctctgcc
taaattttagccttgccttacaatacaagcttgtggctccgagtattttt
gttgcatatgagtggaacataatttgggtgtgtgtatgtatgtgtgtgtg
tgacttattttagaaatgaaactttatgtaatttaggtttagctttgtaa
tcgttaattatactttaatctcttgtaatctctttctctttgtctgactt
agctataaatcactttactgcataatgaccctattgttgaacttgatgta
agtgcatgcttaccctataaatacaattattctctacattcccattcatt
tcagctgataattgctcttataattaaagcaatttgaatttctgctctag
ggatgtggtgaaaaatgtattcagatcacaaaatatttaaacatctggag
ctccacataatcaaagaatcgaagactctatcacattagtctttatcctc
tattattcaaaggataattttttagttagcagaaacacactaccctatac
tctgttcagaatgaagagcaaattatctttacaatgcacagatatccaag
gagcatgtacgtgtgagaatgttttcactacaaattttttcaaaactaat
ttttaactaattatttatttttctcacaagctagcattacttccctccag
tcttccccccacagttcctcatcccatttaccctccccttgcatctgaaa
gggtgcaccagtatctttcgtaccagcagcctcaagtctttgagattagt
gcatttctcccctgagccagaccaggcagtcttatgctgcattatgtgca
gagaactctgacctacccgtgatgtcacgtaggggggggactcaagatct
gggatccaccagggg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13735090_13736164
seq2: B6Ng01-348A05.b_92_1158

seq1  GGTAGTCAACTTCTCCCCTCACTCAGCTACAGTGTGAATAAACTACAAGG  50
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTAGCCAACTTCTCCCCTCACTCACCTACAGTGTGAATAAACTACAAGG  50

seq1  ACACACCCTTGCCTTAAAGTCACACCCCTGTATTCTCCAAGATGGACTGA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACCCTTGCCTTAAAGTCACACCCCTGTATTCTCCAAGAAGGACTGA  100

seq1  CATCTTCAGAAAATGTAGGACAAAACAAATACTTCCTTTGTTAAAAAAGA  150
      ||||| |  ||||||||||||||||||||||||||||||||||||||| |
seq2  CATCTACCAAAAATGTAGGACAAAACAAATACTTCCTTTGTTAAAAAACA  150

seq1  AAGAATTCTTTGAAAACTTAAAAGTCATTGCTCTATCCCATTTCTCTCTG  200
      ||||| ||||| |||||| ||||||||||||||| |||||||||||||||
seq2  AAGAAGTCTTTAAAAACTGAAAAGTCATTGCTCTCTCCCATTTCTCTCTG  200

seq1  CCTAAATTTTAGCCTTGCCTTACAATACAAGCTTGTAGCTCCTAGTAGTT  250
      |||||||||||||||||||||||||||||||||||| ||||| |||| ||
seq2  CCTAAATTTTAGCCTTGCCTTACAATACAAGCTTGTGGCTCCGAGTATTT  250

seq1  TTGTTGCATATGAGTGGAACAGAATTTGTGTGTGTGTATGTATGTGTGTG  300
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TTGTTGCATATGAGTGGAACATAATTTGGGTGTGTGTATGTATGTGTGTG  300

seq1  TGTGTCTTATTTTAGAAATGAAAGTTTATGTAATTTAAGTTTAGCTTTGT  350
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TGTGACTTATTTTAGAAATGAAACTTTATGTAATTTAGGTTTAGCTTTGT  350

seq1  AATCTTTAATTATAATTTAATCTCTTCTAATCTCTTTCTCTTTCTCTGAG  400
      |||| ||||||||| ||||||||||| |||||||||||||||| ||||| 
seq2  AATCGTTAATTATACTTTAATCTCTTGTAATCTCTTTCTCTTTGTCTGAC  400

seq1  TTGGCTATAAATCACTTTACTGCAGAAGGTCCCTATTGTTTAAGTTTATG  450
      || ||||||||||||||||||||| || | |||||||||| || || |||
seq2  TTAGCTATAAATCACTTTACTGCATAATGACCCTATTGTTGAACTTGATG  450

seq1  TAATTTCATGCTTACACTAGAAATACAATTTTTCTCTACATTCCCATTCA  500
      ||| | ||||||||| ||| |||||||||| |||||||||||||||||||
seq2  TAAGTGCATGCTTACCCTATAAATACAATTATTCTCTACATTCCCATTCA  500

seq1  GCACAGCTGATAATTGCTCTAATAATTAAAGTAATTTGAATTTTTGCCCC  550
         ||||||||||||||||| |||||||||| ||||||||||| ||| | 
seq2  TTTCAGCTGATAATTGCTCTTATAATTAAAGCAATTTGAATTTCTGCTCT  550

seq1  AAGGATGTGGTGCAAAATATATTCAGATCACAAAATATCTAAACATTTAG  600
      | |||||||||| ||||| ||||||||||||||||||| ||||||| | |
seq2  AGGGATGTGGTGAAAAATGTATTCAGATCACAAAATATTTAAACATCTGG  600

seq1  GTCACCAGAGAATCAAAGAATCAAAGACTCTATCACATTAGTCTTTATCA  650
        | ||| | |||||||||||| |||||||||||||||||||||||||| 
seq2  AGCTCCACATAATCAAAGAATCGAAGACTCTATCACATTAGTCTTTATCC  650

seq1  AAAATTATTCAAAGCATAATTTTTTAGTTAGCAGAAACACA-AATAGGAT  699
         ||||||||||| ||||||||||||||||||||||||||  |    ||
seq2  TCTATTATTCAAAGGATAATTTTTTAGTTAGCAGAAACACACTACCCTAT  700

seq1  AATATGTTTTGAAGGAAGACAGAATTATCAAGACAATGCACAGAGATAGA  749
      | | ||||  ||| |||||   |||||||   |||||||||||| ||  |
seq2  ACTCTGTTCAGAATGAAGAGCAAATTATCTTTACAATGCACAGATATCCA  750

seq1  TGGAGCATATACAATAAAGAATGTTTTCACTACAAATTTTTTCAAAACTA  799
       ||||||| |||     |||||||||||||||||||||||||||||||||
seq2  AGGAGCATGTACGTGTGAGAATGTTTTCACTACAAATTTTTTCAAAACTA  800

seq1  ATTTTTTAACTAATTATTTATTTTACTCACAATCTAGCCATTACTTCCCT  849
      | |||||||||||||||||||||| ||||||| |||| ||||||||||||
seq2  A-TTTTTAACTAATTATTTATTTTTCTCACAAGCTAG-CATTACTTCCCT  848

seq1  CCAGTCTTCCCCCCACAGTTCCTCATCCCATTTACCCTCCCCCTTGCATC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGTCTTCCCCCCACAGTTCCTCATCCCATTTACCCT-CCCCTTGCATC  897

seq1  TGAGAGGGTGCACCAGTATCTTTCTTCCCTGCAGCCTCAAGTCTTTTGAG  949
      ||| |||||||||||||||||||| | || ||||||||||||| ||||| 
seq2  TGAAAGGGTGCACCAGTATCTTTCGTACCAGCAGCCTCAAGTC-TTTGA-  945

seq1  GATTAGGTGCATTTTCTCCCCTGAGGCCAGACCAGGCAGTCCTCTGCTGT  999
      ||||| ||||| |||||||||||| |||||||||||||||| | ||||| 
seq2  GATTA-GTGCA-TTTCTCCCCTGA-GCCAGACCAGGCAGTCTTATGCTGC  992

seq1  ATTATGTGCCAGAGAACTCTGACCACCCCTTGTATGCCACTTAGGTGGTG  1049
      |||||||| |||||||||||||||  ||| || ||| ||| |||| || |
seq2  ATTATGTG-CAGAGAACTCTGACCTACCCGTG-ATGTCACGTAGGGGGGG  1040

seq1  G-CTCAAGATCTGGGATCTCCCAGGGG  1075
      | ||||||||||||||||  |||||||
seq2  GACTCAAGATCTGGGATCCACCAGGGG  1067