BAC Information

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BAC

Clone NameB6Ng01-348J18
Chromosome5 (Build37)
Map Location 12,262,326 - 12,436,043
singlet/doubletdoublet
Overlap geneLOC100041626, EG668059, Sema3d
Upstream geneEG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J18.bB6Ng01-348J18.g
ACCGA129854GA129855
length4141,075
definitionB6Ng01-348J18.b B6Ng01-348J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,262,326 - 12,262,745)(12,434,959 - 12,436,043)
sequence
taatgaactatatttcaggtttaataagttccaacattttcagccctaaa
aaagtccaaacagaacaagtttttccttcttgggtaaatttttagaagct
cacagttgaaatgcaattccaaagaatacatattttaaagaataatattt
agactgaaacggacagtccatttggagacattcagtcagcttcatgtaac
aatacttgttaactttaaggacttttattgaagcataatgctaggaatgc
atttctatcatagttgtattgtaaatagctcttgatgacctgactactca
aaatgatatgtttcttgttttgttgttgttgttgctgctgctgttgttgt
tttgtaggcatcccaggaaaatgggggtagaataaatctaggagaaagtg
ggagggggtgggga
gaattctaaattttaaaatttctaaaacaaagtttcacattttaaaatta
tcttgacatcatgagccttactctttaacctaatatgatggtattaccaa
attcttcagagctaattgttttgagtattcctaccaggatatcctgggta
acattcctagacaatgtcagaaacagagacacagagtgttagagtggtca
ttaaaagggttctgtgcctcctttatgtctgtgggtagtaacttaacctt
agctgtctgctacccttgaaattgtggattataagaatacttaatgcatt
taatatgaggatgaaatatccatggcataaattaatgcatactattgtaa
gtaagtcatatactactgttatttagaatggtcatattcaaattatgtta
gttttcattgaaaatttatttgagaataaaacaacttaagctgaaaacaa
taatgatatgaaaatacactttaaactcatagtctttaaaatatagctgt
taaaaaaacccactagacatccaacactataaactcaaatagaaaacaat
atttttatgatatcaattatcatcacttttgtaaaaacttataaaagaaa
aggttaaataatctataataaatcaataataaattgaagaaattttaata
tttaatatttctacacttgtataacaacagaaatgattgagtgtttcttt
gtcttagaatacggggtattaaaagaagaggttttaaactatctggttgg
cactgtgaaatttcaaggaaataagtagcctgaggtatagccaaagccca
gcaatagcatcttttgtaaaattcaatttgttttgtgtaaaggatccctt
ccataagccagtgtctacccttagccttaacttataaaaccaatgcatgt
tgtctcatgaacactcattaaaagtcattgttttcagtttttccttaagt
aaatactagtgtcactttagaatttattccctcttatattttatgatgct
tactctttcaaatatgtataggattaattgttagtcaataaaatatttcc
tgacaataaaacattttaacagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12262326_12262745
seq2: B6Ng01-348J18.b_48_467

seq1  GAATTCTAATGAACTATATTTCAGGTTTAATAAGTTCCAACATTTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGAACTATATTTCAGGTTTAATAAGTTCCAACATTTTCAGC  50

seq1  CCTAAAAAAGTCCAAACAGAACAAGTTTTTCCTTCTTGGGTAAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAAGTCCAAACAGAACAAGTTTTTCCTTCTTGGGTAAATTTTTA  100

seq1  GAAGCTCACAGTTGAAATGCAATTCCAAAGAATACATATTTTAAAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCACAGTTGAAATGCAATTCCAAAGAATACATATTTTAAAGAATA  150

seq1  ATATTTAGACTGAAACGGACAGTCCATTTGGAGACATTCAGTCAGCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGACTGAAACGGACAGTCCATTTGGAGACATTCAGTCAGCTTCA  200

seq1  TGTAACAATACTTGTTAACTTTAAGGACTTTTATTGAAGCATAATGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAATACTTGTTAACTTTAAGGACTTTTATTGAAGCATAATGCTAG  250

seq1  GAATGCATTTCTATCATAGTTGTATTGTAAATAGCTCTTGATGACCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATTTCTATCATAGTTGTATTGTAAATAGCTCTTGATGACCTGAC  300

seq1  TACTCAAAATGATATGTTTCTTGTTTTGTTGTTGTTGTTGCTGCTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAATGATATGTTTCTTGTTTTGTTGTTGTTGTTGCTGCTGCTGT  350

seq1  TGTTGTTTTGTAGGCATCCCAGGAAAATGGGGGTAGAATAAATCTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGTAGGCATCCCAGGAAAATGGGGGTAGAATAAATCTAGGAG  400

seq1  AAAGTGGGAGGGGGTGGGGA  420
      ||||||||||||||||||||
seq2  AAAGTGGGAGGGGGTGGGGA  420

seq1: chr5_12434959_12436043
seq2: B6Ng01-348J18.g_64_1138 (reverse)

seq1  TAGCTGTTTTAAAAATGTTTTATTGTCAGGAAAATATTTTAATTGACTAT  50
      ||||||||   ||||||||||||||||||| ||||||||| |||||||| 
seq2  TAGCTGTT---AAAATGTTTTATTGTCAGG-AAATATTTT-ATTGACTA-  44

seq1  ACAAAATAATTCTATACATATTTTGAAAGAGTAAGCAACCAATAAAATAT  100
      || || |||| ||||||||| |||||||||||||||| |  |||||||||
seq2  AC-AATTAATCCTATACATA-TTTGAAAGAGTAAGCATC--ATAAAATAT  90

seq1  -AGAGGGAATAAAATTCTAAGGTGACACTAGTAATTTACTTAAGG-AAAA  148
       ||||||||| ||||||||| ||||||||||| |||||||||||| ||||
seq2  AAGAGGGAAT-AAATTCTAAAGTGACACTAGT-ATTTACTTAAGGAAAAA  138

seq1  CTGAAAACAATGACTTTTAATGAGTGTTCATGAGACAAACATGCATTGGT  198
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGAAAACAATGACTTTTAATGAGTGTTCATGAGAC-AACATGCATTGGT  187

seq1  TTTATAAGTTAAGGCTAAGGGTAGACACTGGCTTATGGAAGGGATCCCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTATAAGTTAAGGCTAAGGGTAGACACTGGCTTATGGAAGGGATCCTTT  237

seq1  ACACAAAACAAATTGAATTTTACAAAAGATGCTATTGCTGGGCTTTGGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAAATTGAATTTTACAAAAGATGCTATTGCTGGGCTTTGGCT  287

seq1  ATACCTCAGGCTACTTATTTCCTTG-AATTTCACAGTGCCAACCAGATAG  347
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATACCTCAGGCTACTTATTTCCTTGAAATTTCACAGTGCCAACCAGATAG  337

seq1  TTTAAAACCTCTTCTTTTAATACCCCGTATTCTAAGACAAAGAAACACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCTCTTCTTTTAATACCCCGTATTCTAAGACAAAGAAACACTC  387

seq1  AATCATTTCTGTTGTTATACAAGTGTAGAAATATTAAATATTAAAATTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCTGTTGTTATACAAGTGTAGAAATATTAAATATTAAAATTTC  437

seq1  TTCAATTTATTATTGATTTATTATAGATTATTTAACCTTTTCTTTTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTATTATTGATTTATTATAGATTATTTAACCTTTTCTTTTATAA  487

seq1  GTTTTTACAAAAGTGATGATAATTGATATCATAAAAATATTGTTTTCTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACAAAAGTGATGATAATTGATATCATAAAAATATTGTTTTCTAT  537

seq1  TTGAGTTTATAGTGTTGGATGTCTAGTGGGTTTTTTTAACAGCTATATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTATAGTGTTGGATGTCTAGTGGGTTTTTTTAACAGCTATATTT  587

seq1  TAAAGACTATGAGTTTAAAGTGTATTTTCATATCATTATTGTTTTCAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTATGAGTTTAAAGTGTATTTTCATATCATTATTGTTTTCAGCT  637

seq1  TAAGTTGTTTTATTCTCAAATAAATTTTCAATGAAAACTAACATAATTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTTTATTCTCAAATAAATTTTCAATGAAAACTAACATAATTTG  687

seq1  AATATGACCATTCTAAATAACAGTAGTATATGACTTACTTACAATAGTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACCATTCTAAATAACAGTAGTATATGACTTACTTACAATAGTAT  737

seq1  GCATTAATTTATGCCATGGATATTTCATCCTCATATTAAATGCATTAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTTATGCCATGGATATTTCATCCTCATATTAAATGCATTAAGT  787

seq1  ATTCTTATAATCCACAATTTCAAGGGTAGCAGACAGCTAAGGTTAAGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATAATCCACAATTTCAAGGGTAGCAGACAGCTAAGGTTAAGTTA  837

seq1  CTACCCACAGACATAAAGGAGGCACAGAACCCTTTTAATGACCACTCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACAGACATAAAGGAGGCACAGAACCCTTTTAATGACCACTCTAA  887

seq1  CACTCTGTGTCTCTGTTTCTGACATTGTCTAGGAATGTTACCCAGGATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGTCTCTGTTTCTGACATTGTCTAGGAATGTTACCCAGGATAT  937

seq1  CCTGGTAGGAATACTCAAAACAATTAGCTCTGAAGAATTTGGTAATACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGAATACTCAAAACAATTAGCTCTGAAGAATTTGGTAATACCA  987

seq1  TCATATTAGGTTAAAGAGTAAGGCTCATGATGTCAAGATAATTTTAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAGGTTAAAGAGTAAGGCTCATGATGTCAAGATAATTTTAAAAT  1037

seq1  GTGAAACTTTGTTTTAGAAATTTTAAAATTTAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTTGTTTTAGAAATTTTAAAATTTAGAATTC  1075