BAC Information

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BAC

Clone NameB6Ng01-348K08
Chromosome5 (Build37)
Map Location 26,344,372 - 26,379,949
singlet/doubletdoublet
Overlap geneEG545739, Speer4a, EG664804
Upstream geneActr3b, LOC100038949, EG272714
Downstream geneLOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348K08.bB6Ng01-348K08.g
ACCGA129882GA129883
length1,2131,126
definitionB6Ng01-348K08.b B6Ng01-348K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,344,372 - 26,345,603)(26,378,816 - 26,379,949)
sequence
gaattcatgacaccatggatgcagtatggcagtgattacatcatcaagtg
tttatccatggggtaagtataattattgacacaaaagttcatcaccttgt
atacccctaggtgcctagggtataattttgccatatagccctggctgcct
ggaacttacaaagatccatctctggatgtgagttctacgtctacagctgg
gatagaacacctgaataaggaagatggtatcaagagtcacttcttacaaa
tcagtttttatgcataagaaatagaatttttaaaaaataggttttaaaag
ttcaattaatatagagataaaggaaaaaacaatgaaatataagaacatat
aacttctaaataacttagcaacaattgaaagaacaaaaaccaaaacttca
accaaaactctaaaggaaaattattgttcagcagcctttttctgcacttt
tagcagcacagccctacagcctgctgctcctcttggacacttggtagcag
aggaatcacctcaattccctgccaagaggcgttgtctgaagagaaaaggg
aacaatgccctgaatcagccatggcttcctcggtagggcctattcccact
caggacatgtgctataagaagattcatctgaggaagattcatctgaggaa
gatggtgggtgctggggatggtgctcagcaggggcctcctggcatggcaa
ctcattctgcaggatgctgtcttcttcagctgtggccaataccagctctc
ttgcagcttctgagacctgggagaggaaggcagttactaagacacaggaa
tggtggggaagggcatggcagctctcaggctgcagtctcccaatacctca
actttacttgacagtcatcattaatattttaactgaaattactgctgtga
aatctgcagacaggcaaagtattcaaaacagtcacaaacatggactgaaa
aagatcaactcaggcttctatcagctccaaacagaacaatggcaaaggaa
gagacctcagtggattacaggaagaaaggagagccacatgccacccagat
catgatatgagaagtactcatttgacatttgtactggctctatccctcca
gtgattgaactagaatgtcatattgactctgctgtctctgtctaagacca
gaacttcactcaaaccttcgtagcatcactatccatgagacatgcatgca
agaatgtgacatg
gaattctattactcctaacatatagcactctataacacacattcattcat
gatcccgtgaaccagatactgagtaatatacagccattgttctagagctg
ctgcggatataaaaacactcagaaaggaatataaaataaatcaggaaggc
cagagccagctgcctcagtttactttcaatagaacatcagtgattgagga
gaacaatggcttccctttggttctggcctgaaagggtcagagctgttaac
tgggagaaagttcaggggtcgttcctcctgaaagggagggatgtctaaac
atgactttctgtgagccagagtttttccatttcctagtcaagagttaata
tttaccctgagaggaagatgtccttgggtcttcagataacagtttcttct
tctgaaattcattcttgttatgagaaaatgactccaaaattgataatatt
gtttgccagatgcaactaagtaaaaatgttattttttgagcaaaatttgc
aaagtcataccccatgtttttaagctgtagaaatcagtaaagctttgcta
cttgccagcagagcggtagtccatctgtttctttaaggcattctccaagc
tggtcttcatcaaatgttaaccacatagcagatataatgaccttccatgg
cttgctgggaaataggttttgatagatgctgctgtccttggccataaact
tgctgtgtttttgctgttgctgattagacttatgtttaacatttatgtga
atgggtgtctttcctactgaatgtaatactgtatgtggctcctcctgagg
gacatttccctcagaggacagaagaaaggaaccacaaccattcctggaga
tggttgttaggcaccatgtgggtcttctagagagtagcagatgcgctaac
ctgtgaggcatccccacaccttcctgcagttggcttttgtccttccagag
gatgtgctgttttagatgggccaggatcaagttcagttgagtgagaaatc
tcagagatgttgtagtacagtgcctgacctgctcatactcatgtctatgc
tgcaagctatgtatgcaggctctgatgtacccctggcagtctgtgtacga
gcttttatttgaacaaatgggtagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26344372_26345603
seq2: B6Ng01-348K08.b_47_1259

seq1  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50

seq1  TTTATCCATGGGGTAAGTATAATTATTGACACAAAAGTTCATCACCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATGGGGTAAGTATAATTATTGACACAAAAGTTCATCACCTTGT  100

seq1  ATACCCCTAGGTGCCTAGGGTATAATTTTGCCATATAGCCCTGGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTAGGTGCCTAGGGTATAATTTTGCCATATAGCCCTGGCTGCCT  150

seq1  GGAACTTACAAAGATCCATCTCTGGATGTGTGTTCTACGTCTACAGCTGG  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACTTACAAAGATCCATCTCTGGATGTGAGTTCTACGTCTACAGCTGG  200

seq1  GATAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTTCTTACAAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATAGAACACCTGAATAAGGAAGATGGTATCAAGAGTCACTTCTTACAAA  250

seq1  TCAGTTTTTATGCATAAGAAATAGAATTTTTAAAAAATAGGTTTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTATGCATAAGAAATAGAATTTTTAAAAAATAGGTTTTAAAAG  300

seq1  TTCAATTAATATAGAGATAAAGGAAAAAACAATGAAATATAAGAACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATATAGAGATAAAGGAAAAAACAATGAAATATAAGAACATAT  350

seq1  AACTTCTAAATAACTTAGCAACAATTGAAAGAACAAAAACCAAAACTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTAAATAACTTAGCAACAATTGAAAGAACAAAAACCAAAACTTCA  400

seq1  AACAAAACTCTAAAGGAAAATTATTGTTCAGCAGCCTTTTTCTGCACTTT  450
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACTCTAAAGGAAAATTATTGTTCAGCAGCCTTTTTCTGCACTTT  450

seq1  TAGCAGCACAGCCCTACAGCCTGCTGCTCCTCTTGGACACTTGGTAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCACAGCCCTACAGCCTGCTGCTCCTCTTGGACACTTGGTAGCAG  500

seq1  AGGAATCAACTCAATTCCCTGCCAAGAGGCGTTGTATGAAGAGAAAAGGG  550
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AGGAATCACCTCAATTCCCTGCCAAGAGGCGTTGTCTGAAGAGAAAAGGG  550

seq1  AACAATGCCCTGAATCAGCCATGGCTTCCTCGGTAGGGCCTATTCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCCCTGAATCAGCCATGGCTTCCTCGGTAGGGCCTATTCCCACT  600

seq1  CAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTCATCTGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTCATCTGAGGAA  650

seq1  GATGGTGGGTGCTGGGGATGGTGCTCAGCAGGGGCCTCCTGGCATGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGGTGCTGGGGATGGTGCTCAGCAGGGGCCTCCTGGCATGGCAA  700

seq1  CTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTC  750
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CTCATTCTGCAGGATGCTGTCTTCTTCAGCTGTGGCCAATACCAGCTCTC  750

seq1  TTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAAGACACAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAAGACACAGGAA  800

seq1  TGGTGGGGAAGGGCATGGCAGCTCTCAGGCTGCATTCTCCCACTTCCTCA  850
      |||||||||||||||||||||||||||||||||| ||||||| | |||||
seq2  TGGTGGGGAAGGGCATGGCAGCTCTCAGGCTGCAGTCTCCCAATACCTCA  850

seq1  ACTTTACTTGACAGTCATCATTAATATTTTAACTGAAATTACTGCTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTGACAGTCATCATTAATATTTTAACTGAAATTACTGCTGTGA  900

seq1  AATCTGCAGACAGGCAAAGAATTCAAAAACAGTCACAAAACATGGACTGA  950
      ||||||||||||||||||| |||| ||||||||||| |||||||||||||
seq2  AATCTGCAGACAGGCAAAGTATTC-AAAACAGTCAC-AAACATGGACTGA  948

seq1  AAAAGATCAACTCAGGCTTCTATCAGCTCCAAAAAAGAAC-ATGGTAAAG  999
      |||||||||||||||||||||||||||||| ||| ||||| |||| ||||
seq2  AAAAGATCAACTCAGGCTTCTATCAGCTCC-AAACAGAACAATGGCAAAG  997

seq1  GAAGAGACCTCAGTGGATTACAGGAAGAAAGGAGAAGGCCACATGCCACC  1049
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  GAAGAGACCTCAGTGGATTACAGGAAGAAAGGAGA--GCCACATGCCACC  1045

seq1  CAGATCAATGATAATGAGAAGCACTCATTTGACATTTGTACTTGGCTCTA  1099
      |||||| ||||| |||||||| ||||||||||||||||||| ||||||| 
seq2  CAGATC-ATGAT-ATGAGAAGTACTCATTTGACATTTGTAC-TGGCTCT-  1091

seq1  ATCCCTCCAAGGTGAATTGACCTAGAATGTCATATGACCTCTGCCTGTCT  1149
      |||||||||  ||| ||||| ||||||||||||||   ||||| ||||||
seq2  ATCCCTCCA--GTG-ATTGAACTAGAATGTCATATTGACTCTG-CTGTCT  1137

seq1  CCTGTCTAAGGACCCAGAAC-TCACTCAAACCTCCATATAGCATTCCACC  1198
       |||||||||   ||||||| |||||||||||| |   ||||||  || |
seq2  -CTGTCTAAG--ACCAGAACTTCACTCAAACCTTC--GTAGCAT--CA-C  1179

seq1  TAT-CATGAAGACATGCATGCAAGAATGTGACATG  1232
      ||| |||| ||||||||||||||||||||||||||
seq2  TATCCATG-AGACATGCATGCAAGAATGTGACATG  1213

seq1: chr5_26378816_26379949
seq2: B6Ng01-348K08.g_65_1190 (reverse)

seq1  GTCTACCCCATTTTGTCCAAATAAAAGGCTCTGAACACAGAACTGCCAGG  50
      ||||||||   ||||| ||||||||| |||| | |||||| |||||||||
seq2  GTCTACCC--ATTTGTTCAAATAAAA-GCTC-GTACACAG-ACTGCCAGG  45

seq1  GGTAACATCAGAGCCCTGCATACATACCTGGCAGCATAGGACAATGAGTA  100
      ||| ||||||||| |||||||||||| || |||||||| ||| |||||||
seq2  GGT-ACATCAGAG-CCTGCATACATAGCTTGCAGCATA-GAC-ATGAGTA  91

seq1  TGAGCAGGTCAGGCACTGTACCTAC-ACATCTCCTGAGATTTCTCCACTC  149
      |||||||||||||||||||| |||| |||||| ||||||||||| |||||
seq2  TGAGCAGGTCAGGCACTGTA-CTACAACATCT-CTGAGATTTCT-CACTC  138

seq1  AACTGGACTTGATCCTGG-CCATCTAAAACAGCACATTCTCTGGAAGGAC  198
      ||||| |||||||||||| |||||||||||||||||| ||||||||||||
seq2  AACTGAACTTGATCCTGGCCCATCTAAAACAGCACATCCTCTGGAAGGAC  188

seq1  AAAAGCCAACTGCAGG-AGGTGTGGGGATGCCTCACAGGTTAGCGCACCT  247
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AAAAGCCAACTGCAGGAAGGTGTGGGGATGCCTCACAGGTTAGCGCATCT  238

seq1  GCTACTCTCTAGAAGACCCACATGGTGCCTAACAACCATCTCCAGGAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTCTAGAAGACCCACATGGTGCCTAACAACCATCTCCAGGAATG  288

seq1  GTTGTGGTTCC-TTCTTCTGTCCTCTGAGGGAAATGTCCCTCAGGAGGAG  346
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTCCTTTCTTCTGTCCTCTGAGGGAAATGTCCCTCAGGAGGAG  338

seq1  CCACATACAGTATTACATTCAGTAGGAAAGACACCCATTCACATAAATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACAGTATTACATTCAGTAGGAAAGACACCCATTCACATAAATGT  388

seq1  TAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGTTTATGGCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGTTTATGGCCA  438

seq1  AGGACAGCAGCATCTATCAAAACCTATTTCCCAGCAAGCCATGGAAGGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCAGCATCTATCAAAACCTATTTCCCAGCAAGCCATGGAAGGTC  488

seq1  ATTATATCTGCTATGTGGTTAACATTTGATGAAGACCAGCTTGGAGAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCTGCTATGTGGTTAACATTTGATGAAGACCAGCTTGGAGAATG  538

seq1  CCTTAAAGAAACAGATGGACTACCGCTCTGCTGGCAAGTAGCAAAGCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAAACAGATGGACTACCGCTCTGCTGGCAAGTAGCAAAGCTTT  588

seq1  ACTGATTTCTACAGCTTAAAAACATGGGGTATGACTTTGCAAATTTTGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTCTACAGCTTAAAAACATGGGGTATGACTTTGCAAATTTTGCT  638

seq1  CAAAAAATAACATTTTTACTTAGTTGCATCTGGCAAACAATATTATCAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATAACATTTTTACTTAGTTGCATCTGGCAAACAATATTATCAAT  688

seq1  TTTGGAGTCATTTTCTCATAACAAGAATGAATTTCAGAAGAAGAAACTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTCATTTTCTCATAACAAGAATGAATTTCAGAAGAAGAAACTGT  738

seq1  TATCTGAAGACCCAAGGACATCTTCCTCTCAGGGTAAATATTAACTCTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAGACCCAAGGACATCTTCCTCTCAGGGTAAATATTAACTCTTG  788

seq1  ACTAGGAAATGGAAAAACTCTGGCTCACAGAAAGTCATGTTTAGACATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAATGGAAAAACTCTGGCTCACAGAAAGTCATGTTTAGACATCC  838

seq1  CTCCCTTTCAGGAGGAACGACCCCTGAACTTTCTCCCAGTTAACAGCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCAGGAGGAACGACCCCTGAACTTTCTCCCAGTTAACAGCTCT  888

seq1  GACCCTTTCAGGCCAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTCAGGCCAGAACCAAAGGGAAGCCATTGTTCTCCTCAATCACT  938

seq1  GATGTTCTATTGAAAGTAAACTGAGGCAGCTGGCTCTGGCCTTCCTGATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTATTGAAAGTAAACTGAGGCAGCTGGCTCTGGCCTTCCTGATT  988

seq1  TATTTTATATTCCTTTCTGAGTGTTTTTATATCCGCAGCAGCTCTAGAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTCCTTTCTGAGTGTTTTTATATCCGCAGCAGCTCTAGAAC  1038

seq1  AATGGCTGTATATTACTCAGTATCTGGTTCACGGGATCATGAATGAATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTATATTACTCAGTATCTGGTTCACGGGATCATGAATGAATGT  1088

seq1  GTGTTATAGAGTGCTATATGTTAGGAGTAATAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATAGAGTGCTATATGTTAGGAGTAATAGAATTC  1126