BAC Information

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BAC

Clone NameB6Ng01-348M23
Chromosome5 (Build37)
Map Location 42,694,331 - 42,695,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348M23.bB6Ng01-348M23.g
ACCGA129988GA129989
length1,1951,143
definitionB6Ng01-348M23.b B6Ng01-348M23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattactcaaagacctaagacacagaagcaaatgcatttccagct
agagatgccaatatttagaactttcaggttttgagatctttccttgaact
atacaaagagggaagaaataaccaagcagtcacatgaggaggaagaatat
gatgcaactgtaggtctcagtgcagttgcgctattaggaatttctgtgct
gaggaggttctgaggtgttgatctgttgtcctgcttttaaatggaatgtt
cctggcagacatccttggtgctgtgggatgggccctatctcaggatattc
cttgagcagttatgtctcactgagtttttacctaatgattcccttctaac
aaaagatatatggcaacactgatgacctctctcttgatgggattctcttg
acttcttgatctgagaaagctaaatagtagattgtaaaacacatgctaag
gaactaagaacatgccaaggacaccttttggcatggtgtgcatgagagcc
ttaaatgatatcatcagggaactaattcttgtgagcagctgagcaaacat
agaagctcttgtgatgtgcagtaaatgaaaatactctgtaaaatgtgttg
ggtgtatattgtttggctagaaaaactcaaccttggctttctcctccctc
tctctactccttaaaggacttcccatgcttggaaatatggaggacttccc
atcccagggaggagtgaggtgtcttaagaccaatatcaatgaaatcagca
ctgtcaggtgacagcatttgattgatattacttcttgctttggcctaatt
ttatgagactggatgagaggaagcaaagacaagaccccatcttctgatga
atcttaccctcattgtactaactacattcaatttccaggacaagaatctt
ttaaaagttcatcaaggaaaggggaaatctcattcagcaaagatcagttt
taggggcccaagggaataaagccagcttattagctaggaggcagagaagc
cagatgtgtagttttctctttttagcttttctggctgctctgatgttgga
attaaaaagtagcttctgttttctacagtaacttagtctgaaatgttgtc
cttcaacgaattccaccaaccactttcatctggaaagagtcatagattca
gtgagagcgataggtccatcctatgttccggaataaggtcccctc
gaattctcacctgaggaataccgaatggcagagaagcacctgacaaaatg
ttcaacatccttaatcatcagaaaaatgcaaatcaaaacaaccctgagat
tccacctcacaccattcagaatggctaaaaccaaaaattcaggtgacagc
agatgttggcgaggatgtagagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatatgtctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtagtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggtaa
atggatggacctggagggcatcattctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggataatagcccaaaacc
taggatacccaagatataatttgctaaacacatgaaactcaagaagaatg
aagactgaagtgtggacactatgcccctccttagaattgggaacaaaaca
cccatggaaggagttacagagacaatgtttggaactgagacgaaaggatg
gaccatgtagagactgccatatccagggatccaccccataatcagcttcc
aaacactgacaccattgcatacactagcaagattttatcgaaaggaccca
gatgtagctgtctcttgtgagactatgctggggcctagcaaacacagaag
tggatgctcacagtcagctattgatggatcacagggctccatgagaagct
agagaagtaccagagctaaggatctgcacctatagtgacacattatgact
accagtatccagagctctgactctagctgcatatgtatccaaaggattgc
tagtcgccatcacttggaaagaaagtctacttgaactctactgttaatgt
ctcagtcaggatcgctccagcactaaaaaaatgggtgatagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42694331_42695537
seq2: B6Ng01-348M23.b_46_1240

seq1  GAATTCATTACTCAAAGACCTAAGACACAGAAGCAAATGCATTTCCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTCAAAGACCTAAGACACAGAAGCAAATGCATTTCCAGCT  50

seq1  AGAGATGCCAATATTTAGAACTTTCAGGTTTTGAGATCTTTCCTTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCCAATATTTAGAACTTTCAGGTTTTGAGATCTTTCCTTGAACT  100

seq1  ATACAAAGAGGGAAGAAATAACCAAGCAGTCACATGAGGAGGAAGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGAGGGAAGAAATAACCAAGCAGTCACATGAGGAGGAAGAATAT  150

seq1  GATGCAACTGTAGGTCTCAGTGCAGTTGCGCTATTAGGAATTTCTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACTGTAGGTCTCAGTGCAGTTGCGCTATTAGGAATTTCTGTGCT  200

seq1  GAGGAGGTTCTGAGGTGTTGATCTGTTGTCCTGCTTTTAAATGGAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTTCTGAGGTGTTGATCTGTTGTCCTGCTTTTAAATGGAATGTT  250

seq1  CCTGGCAGACATCCTTGGTGCTGTGGGATGGGCCCTATCTCAGGATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGACATCCTTGGTGCTGTGGGATGGGCCCTATCTCAGGATATTC  300

seq1  CTTGAGCAGTTATGTCTCACTGAGTTTTTACCTAATGATTCCCTTCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAGTTATGTCTCACTGAGTTTTTACCTAATGATTCCCTTCTAAC  350

seq1  AAAAGATATATGGCAACACTGATGACCTCTCTCTTGATGGGATTCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATATGGCAACACTGATGACCTCTCTCTTGATGGGATTCTCTTG  400

seq1  ACTTCTTGATCTGAGAAAGCTAAATAGTAGATTGTAAAACACATGCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGATCTGAGAAAGCTAAATAGTAGATTGTAAAACACATGCTAAG  450

seq1  GAACTAAGAACATGCCAAGGACACCTTTTGGCATGGTGTGCATGAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGAACATGCCAAGGACACCTTTTGGCATGGTGTGCATGAGAGCC  500

seq1  TTAAATGATATCATCAGGGAACTAATTCTTGTGAGCAGCTGAGCAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATATCATCAGGGAACTAATTCTTGTGAGCAGCTGAGCAAACAT  550

seq1  AGAAGCTCTTGTGATGTGCAGTAAATGAAAATACTCTGTAAAATGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTTGTGATGTGCAGTAAATGAAAATACTCTGTAAAATGTGTTG  600

seq1  GGTGTATATTGTTTGGCTAGAAAAACTCAACCTTGGCTTTCTCCTCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATATTGTTTGGCTAGAAAAACTCAACCTTGGCTTTCTCCTCCCTC  650

seq1  TCTCTACTCCTTAAAGGACTTCCCATGCTTGGAAATATGGAGGACTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTCCTTAAAGGACTTCCCATGCTTGGAAATATGGAGGACTTCCC  700

seq1  ATCCCAGGGAGGAGTGAGGTGTCTTAAGACCAATATCAATGAAATCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGGAGGAGTGAGGTGTCTTAAGACCAATATCAATGAAATCAGCA  750

seq1  CTGTCAGGTGACAGCATTTGATTGATATTACTTCTTGCTTTGGCCTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTGACAGCATTTGATTGATATTACTTCTTGCTTTGGCCTAATT  800

seq1  TTATGAGACTGGATGAGAGGAAGCAAAGACAAGACCCCATCTTCTGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGACTGGATGAGAGGAAGCAAAGACAAGACCCCATCTTCTGATGA  850

seq1  ATCTTACCCTCATTGTACTAACTACATTCAATTTCCAGGACAAGAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCCTCATTGTACTAACTACATTCAATTTCCAGGACAAGAATCTT  900

seq1  TTAAAAGTTCATCAAGG-AAGGGGAAATCTCATTCAGCAAAGATCAGTTT  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTCATCAAGGAAAGGGGAAATCTCATTCAGCAAAGATCAGTTT  950

seq1  TAGGGGCCCAAGGGAATAAAAGCCAGCTTATTAGCTAGGAGGCAAGAGAA  999
      ||||||||||||||||| ||||||||||||||||||||||||| |||| |
seq2  TAGGGGCCCAAGGGAAT-AAAGCCAGCTTATTAGCTAGGAGGC-AGAG-A  997

seq1  AGCCAGATGTTGTAGTTTTCTCCTTTTTTAGCTTTTCTTGGCTGCTTCTG  1049
      ||||||||| ||||||||||||  ||||||||||||| ||||||| ||||
seq2  AGCCAGATG-TGTAGTTTTCTC--TTTTTAGCTTTTC-TGGCTGC-TCTG  1042

seq1  ATGTTGGATATAAAAAGTAGCTTCTGTTTTCTACCAGTAAATTTGGTCCT  1099
      ||||||||  ||||||||||||||||||||||| |||| || || |||  
seq2  ATGTTGGAATTAAAAAGTAGCTTCTGTTTTCTA-CAGT-AACTTAGTC--  1088

seq1  TGAAATGTTGTCTTCCAACGATTTCAAACACAACCAC-TTCATCTTG-AA  1147
      |||||||||||| | |||||| ||| |   ||||||| ||||||| | ||
seq2  TGAAATGTTGTCCTTCAACGAATTCCA--CCAACCACTTTCATCTGGAAA  1136

seq1  GAGTTCATTAGATTCAGTGA-AGCAGTAATGTCTAT-CTATGTTCCTGAT  1195
      ||| ||| |||||||||||| ||| |  | ||| || ||||||||| || 
seq2  GAG-TCA-TAGATTCAGTGAGAGC-GATAGGTCCATCCTATGTTCCGGAA  1183

seq1  AAAGGTCCCCTC  1207
       |||||||||||
seq2  TAAGGTCCCCTC  1195