BAC Information

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BAC

Clone NameB6Ng01-348O22
Chromosome5 (Build37)
Map Location 79,711,806 - 79,898,279
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348O22.bB6Ng01-348O22.g
ACCGA130071GA130072
length1,173408
definitionB6Ng01-348O22.b B6Ng01-348O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,897,098 - 79,898,279)(79,711,806 - 79,712,497)
sequence
gaattctttattaaaggtcagagtaccagagatcatgacaaagacgttct
tttgtttccacataatatttttaattgattatttggggtttttcacacaa
ttctctctgactatatttatttcccagatttcagatgtccactccctaca
cacttgtaaccttccccaaagtaaagaaaaaaaaaaaaaaacctagtgca
aattgtgttgcccatatactcactgaagcatggtcaaacacccagtggcc
aatccattagagaaaactgaatccttccccaccctaacatccactataaa
gctgaaaataaaaatgtattgctggccagcagcagcacagggaatttgcc
caaattatgtagcttcaagccttagaaccctgtcttttatgcaaaacaaa
catatgcaaacagacccccaacattcttgttgtcctacttcagttagcaa
taagcagacccatgaaggctaaaaagcaaggttaatggctttaaggaatt
accgggaactacagacttgtctttaatgggttaggacagtgtttcagctt
tggaagctgttgggatctacagaaagagtattaagctcagaatggttatt
taacctggaattccttctgctaagttctttgagcctgttgtattctccaa
ctgcatgggtaaaacatgatgtttaacctatttaattagataagggttta
aggaatgtaactattcaagtatggaaatcaaggatataagacataaaaat
ggataaatgagaaccagcaaatgctcatttgtttgaaaatgttatatgaa
agttaatatgctagttgaaagatacttatccatctgaagtagatactaaa
gtaaaatacttatatctgtctgggcatcgtgtctgaaattatttattatg
atttgttcacaaagtgaataatggtactaagtttagtttgaggcatatat
ttttgtatttgtttgtcataagaaaatattttcatccatactattctttg
aaagaacatttgtaaaatcagtaataatggacagtagagatagaatctat
gatttacacacagagagaatttgtttaatgtcacttgcacatcatttatg
aaatacggttcgctgaatcggattattcagtctgatgagtccactggttc
atcgaatcataacacattgagca
aagagttaaatgtcagccttgaggacagactgtataatgtctatatttgc
tacatgacaagtaaagtacaagtgtgcaaacacacacacacactcacact
tattcatacacacatacacctacagagagagataaggtggaagagagtta
gggagggagagatggagagggaaagggagagagaaagagagactctgaga
gagacagatagagatttgcggtaaaacacctgtatcaccgtttttcggtg
atagaataagaacaacttgaaaaaaatatatgtaactgtgaatcagtaag
aagaataaagcaggatattaaaatgattatgatttttttgttttatttaa
taaatataaatgaaaatacgatattactctgaatagtttctgctatatgg
aaataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79897098_79898279
seq2: B6Ng01-348O22.b_47_1219 (reverse)

seq1  TGCTCAA-GTG-TATGA-TCGATGTACACAGTGGGACTTCATCAGGACTG  47
      ||||||| ||| ||||| |||||| || |||| |||| |||||| |||||
seq2  TGCTCAATGTGTTATGATTCGATGAAC-CAGT-GGAC-TCATCA-GACTG  46

seq1  AATAATCCCAAATACAGGCGAACACTATTTCATAAATGATTGTGCCAAGG  97
      ||||||||   || || ||||||  |||||||||||||| |||||  | |
seq2  AATAATCC--GATTCA-GCGAACCGTATTTCATAAATGA-TGTGC--AAG  90

seq1  TGACAATAAACAAATTCTCTCTGTGTTGTAAATCATAAGATTCTATCTCT  147
      ||||| ||||||||||||||||||| |||||||||| |||||||||||||
seq2  TGACATTAAACAAATTCTCTCTGTG-TGTAAATCAT-AGATTCTATCTCT  138

seq1  ACTGTCCATTATTACTGATTTTACAAATGTTCTTTCAAAG-ATAGTATGG  196
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  ACTGTCCATTATTACTGATTTTACAAATGTTCTTTCAAAGAATAGTAT-G  187

seq1  GATG-AAATA-TTTCTTATGACAAACAAATACAAAAATATATGCCTCAAA  244
      |||| ||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GATGAAAATATTTTCTTATGACAAACAAATACAAAAATATATGCCTC-AA  236

seq1  ACTAAACTTTAGTACCATTATTCACTTTGTGAACAAATCATAATAAATAA  294
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAC-TTAGTACCATTATTCACTTTGTGAACAAATCATAATAAATAA  285

seq1  TTTCAGACACGATGCCCAGACAGATATAAGTATTTTACTTTAGTATCTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACACGATGCCCAGACAGATATAAGTATTTTACTTTAGTATCTAC  335

seq1  TTCAGATGGATAAGTATCTTTCAACTAGCATATTAACTTTCATATAACAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGATAAGTATCTTTCAACTAGCATATTAACTTTCATATAACAT  385

seq1  TTTCAAACAAATGAGCATTTGCTGGTTCTCATTTATCCATTTTTATGTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAAATGAGCATTTGCTGGTTCTCATTTATCCATTTTTATGTCT  435

seq1  TATATCCTTGATTTCCATACTTGAATAGTTACATTCCTTAAACCCTTATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTTGATTTCCATACTTGAATAGTTACATTCCTTAAACCCTTATC  485

seq1  TAATTAAATAGGTTAAACATCATGTTTTACCCATGCAGTTGGAGAATACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATAGGTTAAACATCATGTTTTACCCATGCAGTTGGAGAATACA  535

seq1  ACAGGCTCAAAGAACTTAGCAGAAGGAATTCCAGGTTAAATAACCATTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCAAAGAACTTAGCAGAAGGAATTCCAGGTTAAATAACCATTCT  585

seq1  GAGCTTAATACTCTTTCTGTAGATCCCAACAGCTTCCAAAGCTGAAACAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAATACTCTTTCTGTAGATCCCAACAGCTTCCAAAGCTGAAACAC  635

seq1  TGTCCTAACCCATTAAAGACAAGTCTGTAGTTCCCGGTAATTCCTTAAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAACCCATTAAAGACAAGTCTGTAGTTCCCGGTAATTCCTTAAAG  685

seq1  CCATTAACCTTGCTTTTTAGCCTTCATGGGTCTGCTTATTGCTAACTGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACCTTGCTTTTTAGCCTTCATGGGTCTGCTTATTGCTAACTGAA  735

seq1  GTAGGACAACAAGAATGTTGGGGGTCTGTTTGCATATGTTTGTTTTGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAACAAGAATGTTGGGGGTCTGTTTGCATATGTTTGTTTTGCAT  785

seq1  AAAAGACAGGGTTCTAAGGCTTGAAGCTACATAATTTGGGCAAATTCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGGGTTCTAAGGCTTGAAGCTACATAATTTGGGCAAATTCCCT  835

seq1  GTGCTGCTGCTGGCCAGCAATACATTTTTATTTTCAGCTTTATAGTGGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTGCTGGCCAGCAATACATTTTTATTTTCAGCTTTATAGTGGAT  885

seq1  GTTAGGGTGGGGAAGGATTCAGTTTTCTCTAATGGATTGGCCACTGGGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGTGGGGAAGGATTCAGTTTTCTCTAATGGATTGGCCACTGGGTG  935

seq1  TTTGACCATGCTTCAGTGAGTATATGGGCAACACAATTTGCACTAGGTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATGCTTCAGTGAGTATATGGGCAACACAATTTGCACTAGGTTT  985

seq1  TTTTTTTTTTTTCTTTACTTTGGGGAAGGTTACAAGTGTGTAGGGAGTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCTTTACTTTGGGGAAGGTTACAAGTGTGTAGGGAGTGG  1035

seq1  ACATCTGAAATCTGGGAAATAAATATAGTCAGAGAGAATTGTGTGAAAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAATCTGGGAAATAAATATAGTCAGAGAGAATTGTGTGAAAAA  1085

seq1  CCCCAAATAATCAATTAAAAATATTATGTGGAAACAAAAGAACGTCTTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATAATCAATTAAAAATATTATGTGGAAACAAAAGAACGTCTTTG  1135

seq1  TCATGATCTCTGGTACTCTGACCTTTAATAAAGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTCTGGTACTCTGACCTTTAATAAAGAATTC  1173

seq1: chr5_79711806_79712497
seq2: B6Ng01-348O22.g_66_479

seq1  GAATTCAAGAGTTAAATGTCAGCCTTGAGGACAGACTGTATAATGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGTTAAATGTCAGCCTTGAGGACAGACTGTATAATGTCTAT  50

seq1  ATTTGCTACATGACAAGTAAAGTACAAGTGTGCAAACACACACACACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTACATGACAAGTAAAGTACAAGTGTGCAAACACACACACACACT  100

seq1  CACACTTATTCATACACACATACACCTACAGAGAGAGATAAGGTGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATTCATACACACATACACCTACAGAGAGAGATAAGGTGGAAGA  150

seq1  GAGTTAGGGAGGGAGAGATGGAGAGGGAAAGGGAGAGAGAAAGAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGTTAGGGAGGGAGAGATGGAGAGGGAAAGGGAGAGAGAAAGAGAGACT  200

seq1  CTGAGAGAGACAGAGAGAGATTTGCGGTAAAACACCTGTATCACCG-TAT  249
      |||||||||||||| ||||||||||||||||||||||||||||||| | |
seq2  CTGAGAGAGACAGATAGAGATTTGCGGTAAAACACCTGTATCACCGTTTT  250

seq1  TCGGTGATAGAATAAGAACAACTTGAAAAAAATATATGTAACTGTGAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGATAGAATAAGAACAACTTGAAAAAAATATATGTAACTGTGAATC  300

seq1  AGTAAGAAGAATAAAGCAGGATATTAAAATGCTTA-CACAATTTTGTCTT  348
      ||||||||||||||||||||||||||||||| |||  |   |||||| ||
seq2  AGTAAGAAGAATAAAGCAGGATATTAAAATGATTATGATTTTTTTGTTTT  350

seq1  ATTTAATAAATATAAATGAAAATATTATATTTCTCTGAGAAGTTTCTGCT  398
      ||||||||||||||||||||||||  ||||| ||||||  ||||||||||
seq2  ATTTAATAAATATAAATGAAAATACGATATTACTCTGAATAGTTTCTGCT  400

seq1  ATATGGAAACAATCACATACAACATTACATTTGTATGCAATGTTCAGGTA  448
      ||||||||| ||||                                    
seq2  ATATGGAAATAATC------------------------------------  414

seq1  CTCAAGAAGCAGGACAATATACTCCAGGATACCTGTAAAAAGTGTCTTCA  498
                                                        
seq2  --------------------------------------------------  414

seq1  AAAACAACTTAGTATCTTCTGAGGGTCCATGAATGAGGAAAGACAAACAG  548
                                                        
seq2  --------------------------------------------------  414

seq1  CTTCAGAACTCATGGAATGTAGCCCACTAGCACATCCAAAATAGGTGTGT  598
                                                        
seq2  --------------------------------------------------  414

seq1  CTCAAACAAGCATGGTCCAGAAACTACTTTTCCTGAGGACTTCATGCTGT  648
                                                        
seq2  --------------------------------------------------  414

seq1  TGTGGAGTTCTGCTTTGCTTGCTGCCTTTGCATCCCACTTAATC  692
                                                  
seq2  --------------------------------------------  414