BAC Information

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BAC

Clone NameB6Ng01-348P12
Chromosome5 (Build37)
Map Location 15,564,497 - 15,742,310
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131, LOC626390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348P12.bB6Ng01-348P12.g
ACCGA130093GA130094
length1,2081,109
definitionB6Ng01-348P12.b B6Ng01-348P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,741,095 - 15,742,310)(15,564,497 - 15,565,565)
sequence
gaattcacattgatcgtttcttccttaattgtagcactgacatgtgacat
ttgggtaaaatgaatgaaattatgttacttttcacatacatcatagaaac
aacacacacacacacacacacacacacacacacacacacaaacacaaaca
tacaaacaatctttgtacaagatactattaaggccaaaaagaaaccctgg
ctgaaaaacacaggcccattagaaatggaaaatctcttgctgttggtctg
tgactgcccaagtgcataaggaatgtagtgtaaatctggattgctgaatt
caaagaaggatcaaaagtattgaagctgactaatgaggtatggttgaagg
aggataacaaggctcttgggacacgggtgatattgccaatactgcttgag
acttgagggcttatgtcaaccagttgaggaacaatgaaactgcctagtga
ttttaagatggaaagcaagaaaacctgacacatggtacatgtaaattgga
tgcagttgcagatggcgcttttggtttcaacaccacagactgctgatcag
tgggacagagaaaaacaggcttgaactgcagattactacatatagattca
tatcacatacaggtatggatagattaaaatggcaattgagaacaacatga
agttgacatgcttgggatatcactagttatacagggtatagacaattgtc
cacagatgtatgaatgcatgcaatcacaaatttcatgtttcccacctgca
cacgaaggcacggatatccatatagaaaaaacaaaagcatcgcctttcag
aatgctagcaacacaggaagcatggcttgctctgatttcaacctattctc
cagagagtagcatagcaaatgctgagtcctagttgctgcattgtttacta
gagggcccaaatcgtgcagaaatgtttctaccctaataagtcacattttt
gcttcctcaatccaaattaatgattctataaaaccttaaatttatagaaa
gtttaaaaaaaaaccacaaatcttcagctcagcagcacatgtttaagaca
aatagcgattcaacaaccttgggctgaagaagtactcatcgcattcttta
actgcttgaataattttactgaaaatagaggacagttaaacaaaccagct
taaagcattccagtccgagtgcccattccttattcttctgactgcgttca
agctttaa
gaattcctaaataaaaagacgtgggaactcctagctcgtcgaagcagaga
gaggtgggtctttgtgagcttgaggttggcctggtctatgtagtgagttc
caggacagccagggctaaatagtgagacaggtctagtgggagtgagaagg
gaagtggagggaaagaggaatgggtggaaagaaaagaccacaatgatgtt
gtgtgaaaagggattcatatgttaattttttctaattttgttttatacta
aaaaataattttctatattaaaaaaccttgattttggttagtaaccttac
atttgctatcaactttcaagtacttgctagtctaaagtcctaaatctaca
aggtagccatataattgatctaatctgtgttactattaacttgctgaaca
gtgatggttagaacaagtacatttctttgtgctcaccctgaagtcccctg
tgcaataacataggttttaaatctgcagatgaaagttactagtatagaag
agaaagtcagatcaggtgtactttaaaaaagtatagaggagctctattaa
tgacatagaaggacttagatggtgttaggatgatgcttaaaaaataagct
tttaaaaccatcttttatgcctcacagctccaggggattttaggaatttc
aacaataatttgtcattcaaaggtcagttgcaaaataaaacttaaggaag
taaagatttagtttgagaatgttcaaaagtttgttgtagttttcaggctc
tttactgaccttcatccttttatctgaacccaaaggctgtttggatatgg
agatacaggattgagggcaagttgattcattgctttctaaaaagaagaat
actcaccactaaattgtttgtgcctttgagctatgagattttcagctttc
ttttcccctcttcattcccagaacccagaagaagacatttcagaagatta
ttattttccagagtcccatttagcttcagaagcttggacattctatggta
gtacgtccaggtaactggcctgctggctcaccctctggttacagttcaca
aattaaaccaaatccttctctgtttttccaatgtgtcttgtttcagagtt
aggtattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15741095_15742310
seq2: B6Ng01-348P12.b_47_1254 (reverse)

seq1  TTAAAGCTAGAAACTGCAGTCAGAGAAGGAATAAAAGGAATGGGCACTCG  50
      |||||||| |||   ||||||||   | ||||  ||||||||||||||||
seq2  TTAAAGCTTGAA--CGCAGTCAG---AAGAAT--AAGGAATGGGCACTCG  43

seq1  AACTTGAAATGCTGTAAGCTGG-TTGTTT-ACTGTCCTCTATTTTTCAGG  98
       || || |||||| |||||||| |||||| ||||||||||| |||||| |
seq2  GAC-TGGAATGCTTTAAGCTGGTTTGTTTAACTGTCCTCTA-TTTTCA-G  90

seq1  TAAAATATTTCAAGGCAGTT-AAGAATGCGATGAGTACTTCTTCAGCCC-  146
      ||||||  ||||| |||||| |||||||||||||||||||||||||||| 
seq2  TAAAATTATTCAA-GCAGTTAAAGAATGCGATGAGTACTTCTTCAGCCCA  139

seq1  AGGTTGTTGAATCGCTTATCTGTCTTAAACATGTGCCTGCTGAGCTG-AG  195
      ||||||||||||||| ||| ||||||||||||||| ||||||||||| ||
seq2  AGGTTGTTGAATCGC-TATTTGTCTTAAACATGTG-CTGCTGAGCTGAAG  187

seq1  ATTTGTGGTTTTTTTTTTAAACTTTCTAATAAATTTAAGGTTTTATAGAA  245
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTGTGG-TTTTTTTTTAAACTTTCT-ATAAATTTAAGGTTTTATAGAA  235

seq1  TCATTAATTTGGATTGAGGAAGC-AAAATGTGACTTATTAGGGTAGAAAC  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATTAATTTGGATTGAGGAAGCAAAAATGTGACTTATTAGGGTAGAAAC  285

seq1  ATTTCTGCACGATTTGGG-CCTCTAGTAAACAATGCAGCAACTAGGACTC  343
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTCTGCACGATTTGGGCCCTCTAGTAAACAATGCAGCAACTAGGACTC  335

seq1  AGCATTTGCTATGCTACTCTCTGGAGAATAGGTTGAAATCAGAGCAAGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGCTATGCTACTCTCTGGAGAATAGGTTGAAATCAGAGCAAGCC  385

seq1  ATGCTTCCTGTGTTGCTAGCATTCTGAAAGGCGATGCTTTTGTTTTTTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTGTGTTGCTAGCATTCTGAAAGGCGATGCTTTTGTTTTTTCT  435

seq1  ATATGGATATCCGTGCCTTCGTGTGCAGGTGGGAAACATGAAATTTGTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATATCCGTGCCTTCGTGTGCAGGTGGGAAACATGAAATTTGTGA  485

seq1  TTGCATGCATTCATACATCTGTGGACAATTGTCTATACCCTGTATAACTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCATTCATACATCTGTGGACAATTGTCTATACCCTGTATAACTA  535

seq1  GTGATATCCCAAGCATGTCAACTTCATGTTGTTCTCAATTGCCATTTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCCCAAGCATGTCAACTTCATGTTGTTCTCAATTGCCATTTTAA  585

seq1  TCTATCCATACCTGTATGTGATATGAATCTATATGTAGTAATCTGCAGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATACCTGTATGTGATATGAATCTATATGTAGTAATCTGCAGTT  635

seq1  CAAGCCTGTTTTTCTCTGTCCCACTGATCAGCAGTCTGTGGTGTTGAAAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGTTTTTCTCTGTCCCACTGATCAGCAGTCTGTGGTGTTGAAAC  685

seq1  CAAAAGCGCCATCTGCAACTGCATCCAATTTACATGTACCATGTGTCAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCGCCATCTGCAACTGCATCCAATTTACATGTACCATGTGTCAGG  735

seq1  TTTTCTTGCTTTCCATCTTAAAATCACTAGGCAGTTTCATTGTTCCTCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCTTTCCATCTTAAAATCACTAGGCAGTTTCATTGTTCCTCAA  785

seq1  CTGGTTGACATAAGCCCTCAAGTCTCAAGCAGTATTGGCAATATCACCCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGACATAAGCCCTCAAGTCTCAAGCAGTATTGGCAATATCACCCG  835

seq1  TGTCCCAAGAGCCTTGTTATCCTCCTTCAACCATACCTCATTAGTCAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAGAGCCTTGTTATCCTCCTTCAACCATACCTCATTAGTCAGCT  885

seq1  TCAATACTTTTGATCCTTCTTTGAATTCAGCAATCCAGATTTACACTACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTTTTGATCCTTCTTTGAATTCAGCAATCCAGATTTACACTACA  935

seq1  TTCCTTATGCACTTGGGCAGTCACAGACCAACAGCAAGAGATTTTCCATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATGCACTTGGGCAGTCACAGACCAACAGCAAGAGATTTTCCATT  985

seq1  TCTAATGGGCCTGTGTTTTTCAGCCAGGGTTTCTTTTTGGCCTTAATAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGGCCTGTGTTTTTCAGCCAGGGTTTCTTTTTGGCCTTAATAGT  1035

seq1  ATCTTGTACAAAGATTGTTTGTATGTTTGTGTTTGTGTGTGTGTGTGTGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTACAAAGATTGTTTGTATGTTTGTGTTTGTGTGTGTGTGTGTGT  1085

seq1  GTGTGTGTGTGTGTGTGTGTGTTGTTTCTATGATGTATGTGAAAAGTAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTTGTTTCTATGATGTATGTGAAAAGTAAC  1135

seq1  ATAATTTCATTCATTTTACCCAAATGTCACATGTCAGTGCTACAATTAAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATTCATTTTACCCAAATGTCACATGTCAGTGCTACAATTAAG  1185

seq1  GAAGAAACGATCAATGTGAATTC  1216
      |||||||||||||||||||||||
seq2  GAAGAAACGATCAATGTGAATTC  1208

seq1: chr5_15564497_15565565
seq2: B6Ng01-348P12.g_67_1175

seq1  GAATTCCTAAATAAAAAGACGTGGGAACTCCTAGCTCGTCGAAGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATAAAAAGACGTGGGAACTCCTAGCTCGTCGAAGCAGAGA  50

seq1  GAGGTGGGTCTTTGTGAGCTTGAGGTTGGCCTGGTCTATGTAGTGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGTCTTTGTGAGCTTGAGGTTGGCCTGGTCTATGTAGTGAGTTC  100

seq1  CAGGACAGCCAGGGCTAAATAGTGAGACAGGTCTAGTGGGAGTGAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTAAATAGTGAGACAGGTCTAGTGGGAGTGAGAAGG  150

seq1  GAAGTGGAGGGAAAGAGGAATGGGTGGAAAGAAAAGACCACAATGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGGGAAAGAGGAATGGGTGGAAAGAAAAGACCACAATGATGTT  200

seq1  GTGTGAAAAGGGATTCATATGTTAATTTTTTCTAATTTTGTTTTATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAGGGATTCATATGTTAATTTTTTCTAATTTTGTTTTATACTA  250

seq1  AAAAATAATTTTCTATATTAAAAAACCTTGATTTTGGTTAGTAACCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTTTCTATATTAAAAAACCTTGATTTTGGTTAGTAACCTTAC  300

seq1  ATTTGCTATCAACTTTCAAGTACTTGCTAGTCTAAAGTCCTAAATCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTATCAACTTTCAAGTACTTGCTAGTCTAAAGTCCTAAATCTACA  350

seq1  AGGTAGCCATATAATTGATCTAATCTGTGTTACTATTAACTTGCTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCATATAATTGATCTAATCTGTGTTACTATTAACTTGCTGAACA  400

seq1  GTGATGGTTAGAACAAGTACATTTCTTTGTGCTCACCCTGAAGTCCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTTAGAACAAGTACATTTCTTTGTGCTCACCCTGAAGTCCCCTG  450

seq1  TGCAATAACATAGGTTTTAAATCTGCAGATGAAAGTTACTAGTATAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAACATAGGTTTTAAATCTGCAGATGAAAGTTACTAGTATAGAAG  500

seq1  AGAAAGTCAGATCAGGTGTACTTTAAAAAAGTATAGAGGAGCTCTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCAGATCAGGTGTACTTTAAAAAAGTATAGAGGAGCTCTATTAA  550

seq1  TGACATAGAAGGACTTAGATGGTGTTAGGATGATGCTTAAAAAATAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGAAGGACTTAGATGGTGTTAGGATGATGCTTAAAAAATAAGCT  600

seq1  TTTAAAACCATCTTTTATGCCTCACAGCTCCAGGGGATTTTAGGAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCATCTTTTATGCCTCACAGCTCCAGGGGATTTTAGGAATTTC  650

seq1  AACAATAATTTGTCATTCAAAGGTCAGTTGCAAAATAAAAC-TAAGGAAG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACAATAATTTGTCATTCAAAGGTCAGTTGCAAAATAAAACTTAAGGAAG  700

seq1  TAAAGA-TTAG-TTGAGAATGTTC-AAAGTTTGTTGTAG-TCTCAGGCTC  745
      |||||| |||| |||||||||||| |||||||||||||| | ||||||||
seq2  TAAAGATTTAGTTTGAGAATGTTCAAAAGTTTGTTGTAGTTTTCAGGCTC  750

seq1  TTTACTGACC-TCATCC-TTTATCTGAACCCAAAGGCTG-TTGGATATGG  792
      |||||||||| |||||| ||||||||||||||||||||| ||||||||||
seq2  TTTACTGACCTTCATCCTTTTATCTGAACCCAAAGGCTGTTTGGATATGG  800

seq1  AGATACAGGA-TGAGGGCAAG-TGATTCA-TGC-TTCT-AAAAGAAGAA-  836
      |||||||||| |||||||||| ||||||| ||| |||| |||||||||| 
seq2  AGATACAGGATTGAGGGCAAGTTGATTCATTGCTTTCTAAAAAGAAGAAT  850

seq1  ACTCAGCACTAAA-TGTTTGTGCC-TTGAGCTATGAGA-TTTCAGC-TTC  882
      ||||| ||||||| |||||||||| ||||||||||||| ||||||| |||
seq2  ACTCACCACTAAATTGTTTGTGCCTTTGAGCTATGAGATTTTCAGCTTTC  900

seq1  TTT--CCCTCTTCATTCCCAGAA-CCAGA--GAGACA-TTCAG-AGAT--  923
      |||  |||||||||||||||||| |||||   ||||| ||||| ||||  
seq2  TTTTCCCCTCTTCATTCCCAGAACCCAGAAGAAGACATTTCAGAAGATTA  950

seq1  ATAATTTCCAGAG-CCCA-TTAGC-TCAG-AGCTT-GACATTCTATGGTA  968
       || ||||||||| |||| ||||| |||| ||||| ||||||||||||||
seq2  TTATTTTCCAGAGTCCCATTTAGCTTCAGAAGCTTGGACATTCTATGGTA  1000

seq1  GTACGTCCAGGT-ACT-GCCTGCT-GCTCACCCTCT-GTTACAGCTCACA  1014
      |||||||||||| ||| ||||||| ||||||||||| ||||||| |||||
seq2  GTACGTCCAGGTAACTGGCCTGCTGGCTCACCCTCTGGTTACAGTTCACA  1050

seq1  AA-TAAACCAAA--CCTCTCTG-TTTTCCAA-GTGTCTTG-TTCAGTTAG  1058
      || |||||||||  | |||||| |||||||| |||||||| |||||  ||
seq2  AATTAAACCAAATCCTTCTCTGTTTTTCCAATGTGTCTTGTTTCAG--AG  1098

seq1  TATCTTATTCT  1069
      |    ||||||
seq2  TTAGGTATTCT  1109